Q9BYV8 (CEP41_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 1, 2013.
Version 96.
History...
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Centrosomal protein of 41 kDa Short name=Cep41 Alternative name(s): Testis-specific gene A14 protein | ||||
| Gene names |
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| Organism | Homo sapiens (Human) [Reference proteome] | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo![]() |
Protein attributes
| Sequence length | 373 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Required during ciliogenesis for tubulin glutamylation in cilium. Probably acts by participating to the transport of TTLL6, a tubulin polyglutamylase, between the basal body and the cilium. Ref.14 |
| Subunit structure | Found in a complex with TTLL6. |
| Subcellular location | Cytoplasm › cytoskeleton › centrosome. Cell projection › cilium. Cytoplasm › cytoskeleton › cilium basal body. Note: Localizes mainly to the cilium basal body and in primary cilia. Ref.10 Ref.14 |
| Tissue specificity | Isoform 1 and isoform 4 are expressed in testis and fetal tissues. Ref.1 |
| Domain | Although it contains a rhodanese domain, does not display phosphatase activity, suggesting that the protein is enzymatically inactive (Ref.14). |
| Involvement in disease | Joubert syndrome 15 (JBTS15) [MIM:614464]: An autosomal recessive disorder presenting with cerebellar ataxia, oculomotor apraxia, hypotonia, neonatal breathing abnormalities and psychomotor delay. Neuroradiologically, it is characterized by cerebellar vermian hypoplasia/aplasia, thickened and reoriented superior cerebellar peduncles, and an abnormally large interpeduncular fossa, giving the appearance of a molar tooth on transaxial slices (molar tooth sign). Additional variable features include retinal dystrophy, renal disease, liver fibrosis and polydactyly. Genetic variations in CEP41 may be associated with susceptibility to autism. |
| Sequence similarities | Belongs to the CEP41 family. Contains 1 rhodanese domain. |
Ontologies
| Keywords | |
|---|---|
| Biological process | Cilium biogenesis/degradation Protein transport Transport |
| Cellular component | Cell projection Cilium Cytoplasm Cytoskeleton |
| Coding sequence diversity | Alternative splicing Polymorphism |
| Disease | Ciliopathy Joubert syndrome |
| PTM | Phosphoprotein |
| Technical term | Complete proteome Reference proteome |
| Gene Ontology (GO) | |
| Biological_process | G2/M transition of mitotic cell cycle Traceable author statement. Source: Reactome cilium assemblyInferred from mutant phenotype Ref.14. Source: UniProtKB protein polyglutamylationInferred from sequence or structural similarity. Source: UniProtKB protein transportInferred from electronic annotation. Source: UniProtKB-KW |
| Cellular_component | centriole Inferred from direct assay Ref.14. Source: UniProtKB cilium basal bodyInferred from direct assay Ref.14. Source: UniProtKB cytosolTraceable author statement. Source: Reactome primary ciliumInferred from direct assay Ref.14. Source: UniProtKB |
| Complete GO annotation... | |
Alternative products
| This entry describes 5 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: Q9BYV8-1) Also known as: L-type; This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: Q9BYV8-2) The sequence of this isoform differs from the canonical sequence as follows: 254-325: Missing. | ||||||
| Isoform 3 (identifier: Q9BYV8-3) The sequence of this isoform differs from the canonical sequence as follows: 1-238: Missing. | ||||||
| Isoform 4 (identifier: Q9BYV8-4) Also known as: S-type; The sequence of this isoform differs from the canonical sequence as follows: 34-54: NSMTKYTEKLEEIKKNYRYKK → ACVYLTSSPALPDCAMNGLCF 55-373: Missing. | ||||||
| Isoform 5 (identifier: Q9BYV8-5) The sequence of this isoform differs from the canonical sequence as follows: 33-49: GNSMTKYTEKLEEIKKN → D 254-325: Missing. | ||||||
| Note: No experimental confirmation available. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 373 | 373 | Centrosomal protein of 41 kDa | PRO_0000089489 | |||||
Regions | |||||||||
| Domain | 169 – 266 | 98 | Rhodanese | ||||||
Amino acid modifications | |||||||||
| Modified residue | 99 | 1 | Phosphoserine By similarity | ||||||
Natural variations | |||||||||
| Alternative sequence | 1 – 238 | 238 | Missing in isoform 3. | VSP_012245 | |||||
| Alternative sequence | 33 – 49 | 17 | GNSMT…EIKKN → D in isoform 5. | VSP_042579 | |||||
| Alternative sequence | 34 – 54 | 21 | NSMTK…YRYKK → ACVYLTSSPALPDCAMNGLC F in isoform 4. | VSP_012246 | |||||
| Alternative sequence | 55 – 373 | 319 | Missing in isoform 4. | VSP_012247 | |||||
| Alternative sequence | 254 – 325 | 72 | Missing in isoform 2 and isoform 5. | VSP_012248 | |||||
| Natural variant | 36 | 1 | M → T Probable disease-associated mutation found in a patient with Joubert syndrome; digenic inheritance; the patient also carries a truncating mutation in CC2D2A. Ref.14 | VAR_067053 | |||||
| Natural variant | 89 | 1 | Q → E Found in a patient with Meckel syndrome; unknown pathological significance. Ref.14 | VAR_067054 | |||||
| Natural variant | 179 | 1 | R → H Probable disease-associated mutation found in a patient with Joubert syndrome; digenic inheritance; the patient also carries a truncating mutation in KIF7. Ref.14 Corresponds to variant rs140259402 [ dbSNP | Ensembl ]. | VAR_067055 | |||||
| Natural variant | 206 | 1 | P → A Found in a patient with autism; unknown pathological significance. Ref.12 Corresponds to variant rs143303575 [ dbSNP | Ensembl ]. | VAR_067056 | |||||
| Natural variant | 240 | 1 | C → G Found in a patient with autism; unknown pathological significance. Ref.12 Corresponds to variant rs113941736 [ dbSNP | Ensembl ]. | VAR_067057 | |||||
| Natural variant | 360 | 1 | R → C Probable disease-associated mutation found in a patient with Joubert syndrome; digenic inheritance; the patient also carries mutation A-1447 in CC2D2A. Ref.14 | VAR_067058 | |||||
Experimental info | |||||||||
| Sequence conflict | 170 | 1 | D → G in BAB15359. Ref.4 | ||||||
| Sequence conflict | 279 | 1 | P → S in CAB94886. Ref.9 | ||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "The gene TSGA14, adjacent to the imprinted gene MEST, escapes genomic imprinting." Yamada T., Kayashima T., Yamasaki K., Ohta T., Yoshiura K., Matsumoto N., Fujimoto S., Niikawa N., Kishino T. Gene 288:57-63(2002) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS 1 AND 4), TISSUE SPECIFICITY. |
| [2] | "Identification of a testis-specific gene (TSGA14) proximal to the MEST/COPG2 imprinting cluster on chromosome 7." Brunner B., Kalamajka R., Ropers H.-H., Fundele R., Kalscheuer V.M. Submitted (AUG-2000) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1). |
| [3] | Xu M., Xu Y.Z., Zhou Z.M., Sha J.H. Submitted (NOV-2002) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 3). Tissue: Testis. |
| [4] | "Complete sequencing and characterization of 21,243 full-length human cDNAs." Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S. Sugano S.Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 5). Tissue: Neuroblastoma, Trachea and Uterus. |
| [5] | "The DNA sequence of human chromosome 7." Hillier L.W., Fulton R.S., Fulton L.A., Graves T.A., Pepin K.H., Wagner-McPherson C., Layman D., Maas J., Jaeger S., Walker R., Wylie K., Sekhon M., Becker M.C., O'Laughlin M.D., Schaller M.E., Fewell G.A., Delehaunty K.D., Miner T.L. Wilson R.K.Nature 424:157-164(2003) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [6] | "Human chromosome 7: DNA sequence and biology." Scherer S.W., Cheung J., MacDonald J.R., Osborne L.R., Nakabayashi K., Herbrick J.-A., Carson A.R., Parker-Katiraee L., Skaug J., Khaja R., Zhang J., Hudek A.K., Li M., Haddad M., Duggan G.E., Fernandez B.A., Kanematsu E., Gentles S. Tsui L.-C.Science 300:767-772(2003) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [7] | Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L., Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R., Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V., Hannenhalli S., Turner R. Venter J.C.Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [8] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2). Tissue: Eye. |
| [9] | "The full-ORF clone resource of the German cDNA consortium." Bechtel S., Rosenfelder H., Duda A., Schmidt C.P., Ernst U., Wellenreuther R., Mehrle A., Schuster C., Bahr A., Bloecker H., Heubner D., Hoerlein A., Michel G., Wedler H., Koehrer K., Ottenwaelder B., Poustka A., Wiemann S., Schupp I. BMC Genomics 8:399-399(2007) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 153-373 (ISOFORM 1). Tissue: Melanoma. |
| [10] | "Proteomic characterization of the human centrosome by protein correlation profiling." Andersen J.S., Wilkinson C.J., Mayor T., Mortensen P., Nigg E.A., Mann M. Nature 426:570-574(2003) [PubMed] [Europe PMC] [Abstract] Cited for: MASS SPECTROMETRY, SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS]. Tissue: Lymphoblast. |
| [11] | "Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions." Mayya V., Lundgren D.H., Hwang S.-I., Rezaul K., Wu L., Eng J.K., Rodionov V., Han D.K. Sci. Signal. 2:RA46-RA46(2009) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. Tissue: Leukemic T-cell. |
| [12] | "Mutations in the TSGA14 gene in families with autism spectrum disorders." Korvatska O., Estes A., Munson J., Dawson G., Bekris L.M., Kohen R., Yu C.E., Schellenberg G.D., Raskind W.H. Am. J. Med. Genet. B Neuropsychiatr. Genet. 156:303-311(2011) [PubMed] [Europe PMC] [Abstract] Cited for: POSSIBLE INVOLVEMENT IN AUTISM, VARIANTS ALA-206 AND GLY-240. |
| [13] | "Initial characterization of the human central proteome." Burkard T.R., Planyavsky M., Kaupe I., Breitwieser F.P., Buerckstuemmer T., Bennett K.L., Superti-Furga G., Colinge J. BMC Syst. Biol. 5:17-17(2011) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. |
| [14] | "CEP41 is mutated in Joubert syndrome and is required for tubulin glutamylation at the cilium." Lee J.E., Silhavy J.L., Zaki M.S., Schroth J., Bielas S.L., Marsh S.E., Olvera J., Brancati F., Iannicelli M., Ikegami K., Schlossman A.M., Merriman B., Attie-Bitach T., Logan C.V., Glass I.A., Cluckey A., Louie C.M., Lee J.H. Gleeson J.G.Nat. Genet. 44:193-199(2012) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION, SUBCELLULAR LOCATION, INVOLVEMENT IN JBTS15, INTERACTION WITH TTLL6, VARIANTS THR-36; GLU-89; HIS-179 AND CYS-360. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | AF429308 mRNA. Translation: AAM43959.1. AF429309 mRNA. Translation: AAM43960.1. AJ278890 mRNA. Translation: CAC33567.1. AY186739 mRNA. Translation: AAO31692.1. AK026098 mRNA. Translation: BAB15359.1. AK298618 mRNA. Translation: BAG60797.1. AK314676 mRNA. Translation: BAG37230.1. AC007938 Genomic DNA. No translation available. CH471070 Genomic DNA. Translation: EAW83764.1. CH236950 Genomic DNA. Translation: EAL24088.1. BC056162 mRNA. Translation: AAH56162.1. AL359617 mRNA. Translation: CAB94886.1. |
| IPI | IPI00019448. IPI00168911. IPI00385062. IPI00514880. IPI01012223. |
| PIR | T50634. |
| RefSeq | NP_001244087.1. NM_001257158.1. NP_001244088.1. NM_001257159.1. NP_001244089.1. NM_001257160.1. NP_061188.1. NM_018718.2. |
| UniGene | Hs.368315. |
3D structure databases | |
| ProteinModelPortal | Q9BYV8. |
| ModBase | Search... |
Protein-protein interaction databases | |
| STRING | 9606.ENSP00000223208. |
PTM databases | |
| PhosphoSite | Q9BYV8. |
Polymorphism databases | |
| DMDM | 56748870. |
Proteomic databases | |
| PaxDb | Q9BYV8. |
| PRIDE | Q9BYV8. |
Protocols and materials databases | |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| Ensembl | ENST00000223208; ENSP00000223208; ENSG00000106477. ENST00000343969; ENSP00000342738; ENSG00000106477. ENST00000489512; ENSP00000417815; ENSG00000106477. ENST00000541543; ENSP00000445888; ENSG00000106477. ENST00000577507; ENSP00000463010; ENSG00000265594. ENST00000580443; ENSP00000462740; ENSG00000265594. ENST00000580536; ENSP00000462047; ENSG00000265594. ENST00000583790; ENSP00000462624; ENSG00000265594. |
| GeneID | 95681. |
| KEGG | hsa:95681. |
| UCSC | uc003vpy.3. human. uc003vpz.3. human. uc003vqa.3. human. |
Organism-specific databases | |
| CTD | 95681. |
| GeneCards | GC07M130038. |
| HGNC | HGNC:12370. CEP41. |
| HPA | HPA024090. |
| MIM | 610523. gene. 614464. phenotype. |
| neXtProt | NX_Q9BYV8. |
| Orphanet | 475. Joubert syndrome. 220493. Joubert syndrome with ocular defect. |
| PharmGKB | PA37039. |
| GenAtlas | Search... |
Phylogenomic databases | |
| eggNOG | NOG47422. |
| HOGENOM | HOG000252966. |
| HOVERGEN | HBG050896. |
| InParanoid | Q9BYV8. |
| KO | K16455. |
| OMA | ATTMCER. |
| OrthoDB | EOG46Q6SR. |
| PhylomeDB | Q9BYV8. |
Enzyme and pathway databases | |
| Reactome | REACT_115566. Cell Cycle. |
Gene expression databases | |
| ArrayExpress | Q9BYV8. |
| Bgee | Q9BYV8. |
| CleanEx | HS_TSGA14. |
| Genevestigator | Q9BYV8. |
| GermOnline | ENSG00000106477. Homo sapiens. |
Family and domain databases | |
| Gene3D | 3.40.250.10. 1 hit. |
| InterPro | IPR001763. Rhodanese-like_dom. [Graphical view] |
| Pfam | PF00581. Rhodanese. 1 hit. [Graphical view] |
| SMART | SM00450. RHOD. 1 hit. [Graphical view] |
| SUPFAM | SSF52821. Rhodanese-like. 1 hit. |
| PROSITE | PS50206. RHODANESE_3. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Other | |
| GenomeRNAi | 95681. |
| NextBio | 78540. |
| SOURCE | Search... |
Entry information
| Entry name | CEP41_HUMAN | ||||||||
| Accession | Primary (citable) accession number: Q9BYV8 Secondary accession number(s): A4D1M0 Q9NPV3 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 7 Human chromosome 7: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| SIMILARITY comments Index of protein domains and families |

Clusters with
