Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Leucine-rich repeat-containing protein 2

Gene

LRRC2

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Leucine-rich repeat-containing protein 2
Gene namesi
Name:LRRC2
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
Proteomesi
  • UP000005640 Componenti: Chromosome 3

Organism-specific databases

HGNCiHGNC:14676. LRRC2.

Pathology & Biotechi

Organism-specific databases

PharmGKBiPA30461.

Polymorphism and mutation databases

BioMutaiLRRC2.
DMDMi23821855.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 371371Leucine-rich repeat-containing protein 2PRO_0000084491Add
BLAST

Proteomic databases

EPDiQ9BYS8.
PaxDbiQ9BYS8.
PRIDEiQ9BYS8.

PTM databases

iPTMnetiQ9BYS8.
PhosphoSiteiQ9BYS8.

Expressioni

Gene expression databases

BgeeiQ9BYS8.
CleanExiHS_LRRC2.
ExpressionAtlasiQ9BYS8. baseline and differential.
GenevisibleiQ9BYS8. HS.

Organism-specific databases

HPAiHPA039138.
HPA040096.

Interactioni

Protein-protein interaction databases

BioGridi122668. 1 interaction.
IntActiQ9BYS8. 3 interactions.
STRINGi9606.ENSP00000296144.

Structurei

3D structure databases

ProteinModelPortaliQ9BYS8.
SMRiQ9BYS8. Positions 86-325.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Repeati122 – 14322LRR 1Add
BLAST
Repeati145 – 16622LRR 2Add
BLAST
Repeati168 – 18922LRR 3Add
BLAST
Repeati191 – 21424LRR 4Add
BLAST
Repeati215 – 23521LRR 5Add
BLAST
Repeati238 – 26023LRR 6Add
BLAST
Repeati261 – 28323LRR 7Add
BLAST
Repeati284 – 30522LRR 8Add
BLAST
Repeati308 – 32922LRR 9Add
BLAST

Sequence similaritiesi

Contains 9 LRR (leucine-rich) repeats.Curated

Keywords - Domaini

Leucine-rich repeat, Repeat

Phylogenomic databases

eggNOGiKOG0619. Eukaryota.
COG4886. LUCA.
GeneTreeiENSGT00840000129686.
HOGENOMiHOG000065739.
HOVERGENiHBG052358.
InParanoidiQ9BYS8.
OMAiPTALCDS.
OrthoDBiEOG7DVDB3.
PhylomeDBiQ9BYS8.
TreeFamiTF333627.

Family and domain databases

Gene3Di3.80.10.10. 1 hit.
InterProiIPR032675. L_dom-like.
IPR001611. Leu-rich_rpt.
IPR003591. Leu-rich_rpt_typical-subtyp.
[Graphical view]
PfamiPF13855. LRR_8. 1 hit.
[Graphical view]
SMARTiSM00369. LRR_TYP. 4 hits.
[Graphical view]
SUPFAMiSSF52058. SSF52058. 1 hit.
PROSITEiPS51450. LRR. 4 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9BYS8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGHKVVVFDI SVIRALWETR VKKHKAWQKK EVERLEKSAL EKIKEEWNFV
60 70 80 90 100
AECRRKGIPQ AVYCKNGFID TSVRLLDKIE RNTLTRQSSL PKDRGKRSSA
110 120 130 140 150
FVFELSGEHW TELPDSLKEQ THLREWYISN TLIQIIPTYI QLFQAMRILD
160 170 180 190 200
LPKNQISHLP AEIGCLKNLK ELNVGFNYLK SIPPELGDCE NLERLDCSGN
210 220 230 240 250
LELMELPFEL SNLKQVTFVD ISANKFSSVP ICVLRMSNLQ WLDISSNNLT
260 270 280 290 300
DLPQDIDRLE ELQSFLLYKN KLTYLPYSML NLKKLTLLVV SGDHLVELPT
310 320 330 340 350
ALCDSSTPLK FVSLMDNPID NAQCEDGNEI MESERDRQHF DKEVMKAYIE
360 370
DLKERESVPS YTTKVSFSLQ L
Length:371
Mass (Da):42,943
Last modified:October 10, 2002 - v2
Checksum:iFF67A824F26680C3
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti30 – 301K → R in BAB71585 (PubMed:14702039).Curated

Natural variant

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Natural varianti32 – 321V → A.1 Publication
Corresponds to variant rs28687398 [ dbSNP | Ensembl ].
VAR_051140
Natural varianti83 – 831T → A.
Corresponds to variant rs17286758 [ dbSNP | Ensembl ].
VAR_051141
Natural varianti145 – 1451A → E.1 Publication
Corresponds to variant rs17078944 [ dbSNP | Ensembl ].
VAR_051142

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ308569 mRNA. Translation: CAC33442.1.
AK057808 mRNA. Translation: BAB71585.1.
AK315636 mRNA. Translation: BAG38004.1.
BC029118 mRNA. Translation: AAH29118.1.
CCDSiCCDS2741.1.
RefSeqiNP_078788.2. NM_024512.4.
XP_011532412.1. XM_011534110.1.
UniGeneiHs.657345.

Genome annotation databases

EnsembliENST00000296144; ENSP00000296144; ENSG00000163827.
ENST00000395905; ENSP00000379241; ENSG00000163827.
GeneIDi79442.
KEGGihsa:79442.
UCSCiuc003cpu.5. human.

Keywords - Coding sequence diversityi

Polymorphism

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ308569 mRNA. Translation: CAC33442.1.
AK057808 mRNA. Translation: BAB71585.1.
AK315636 mRNA. Translation: BAG38004.1.
BC029118 mRNA. Translation: AAH29118.1.
CCDSiCCDS2741.1.
RefSeqiNP_078788.2. NM_024512.4.
XP_011532412.1. XM_011534110.1.
UniGeneiHs.657345.

3D structure databases

ProteinModelPortaliQ9BYS8.
SMRiQ9BYS8. Positions 86-325.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi122668. 1 interaction.
IntActiQ9BYS8. 3 interactions.
STRINGi9606.ENSP00000296144.

PTM databases

iPTMnetiQ9BYS8.
PhosphoSiteiQ9BYS8.

Polymorphism and mutation databases

BioMutaiLRRC2.
DMDMi23821855.

Proteomic databases

EPDiQ9BYS8.
PaxDbiQ9BYS8.
PRIDEiQ9BYS8.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000296144; ENSP00000296144; ENSG00000163827.
ENST00000395905; ENSP00000379241; ENSG00000163827.
GeneIDi79442.
KEGGihsa:79442.
UCSCiuc003cpu.5. human.

Organism-specific databases

CTDi79442.
GeneCardsiLRRC2.
HGNCiHGNC:14676. LRRC2.
HPAiHPA039138.
HPA040096.
MIMi607180. gene.
neXtProtiNX_Q9BYS8.
PharmGKBiPA30461.
GenAtlasiSearch...

Phylogenomic databases

eggNOGiKOG0619. Eukaryota.
COG4886. LUCA.
GeneTreeiENSGT00840000129686.
HOGENOMiHOG000065739.
HOVERGENiHBG052358.
InParanoidiQ9BYS8.
OMAiPTALCDS.
OrthoDBiEOG7DVDB3.
PhylomeDBiQ9BYS8.
TreeFamiTF333627.

Miscellaneous databases

ChiTaRSiLRRC2. human.
GenomeRNAii79442.
PROiQ9BYS8.
SOURCEiSearch...

Gene expression databases

BgeeiQ9BYS8.
CleanExiHS_LRRC2.
ExpressionAtlasiQ9BYS8. baseline and differential.
GenevisibleiQ9BYS8. HS.

Family and domain databases

Gene3Di3.80.10.10. 1 hit.
InterProiIPR032675. L_dom-like.
IPR001611. Leu-rich_rpt.
IPR003591. Leu-rich_rpt_typical-subtyp.
[Graphical view]
PfamiPF13855. LRR_8. 1 hit.
[Graphical view]
SMARTiSM00369. LRR_TYP. 4 hits.
[Graphical view]
SUPFAMiSSF52058. SSF52058. 1 hit.
PROSITEiPS51450. LRR. 4 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "The transcriptional map of the common eliminated region 1 (C3CER1) in 3p21.3."
    Kiss H., Yang Y., Kiss C., Andersson K., Klein G., Imreh S., Dumanski J.P.
    Eur. J. Hum. Genet. 10:52-61(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA], VARIANT GLU-145.
  2. "Complete sequencing and characterization of 21,243 full-length human cDNAs."
    Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S.
    , Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.
    Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA], VARIANT ALA-32.
    Tissue: Cerebellum and Synovium.
  3. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Colon, Kidney and Stomach.

Entry informationi

Entry nameiLRRC2_HUMAN
AccessioniPrimary (citable) accession number: Q9BYS8
Secondary accession number(s): B2RDQ7, Q96LT5
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 10, 2002
Last sequence update: October 10, 2002
Last modified: June 8, 2016
This is version 130 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 3
    Human chromosome 3: entries, gene names and cross-references to MIM
  2. Human entries with polymorphisms or disease mutations
    List of human entries with polymorphisms or disease mutations
  3. Human polymorphisms and disease mutations
    Index of human polymorphisms and disease mutations
  4. MIM cross-references
    Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot
  5. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.