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Q9BYD2

- RM09_HUMAN

UniProt

Q9BYD2 - RM09_HUMAN

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Protein
39S ribosomal protein L9, mitochondrial
Gene
MRPL9
Organism
Homo sapiens (Human)
Status
Reviewed - Annotation score: 3 out of 5 - Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  1. poly(A) RNA binding Source: UniProtKB
  2. structural constituent of ribosome Source: UniProtKB

GO - Biological processi

  1. translation Source: UniProtKB
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Names & Taxonomyi

Protein namesi
Recommended name:
39S ribosomal protein L9, mitochondrial
Short name:
L9mt
Short name:
MRP-L9
Gene namesi
Name:MRPL9
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
ProteomesiUP000005640: Chromosome 1

Organism-specific databases

HGNCiHGNC:14277. MRPL9.

Subcellular locationi

GO - Cellular componenti

  1. mitochondrial ribosome Source: UniProtKB
  2. mitochondrion Source: HPA
Complete GO annotation...

Keywords - Cellular componenti

Mitochondrion

Pathology & Biotechi

Organism-specific databases

PharmGKBiPA30991.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini? – 26739S ribosomal protein L9, mitochondrialPRO_0000030550
Transit peptidei1 – ?Mitochondrion Reviewed prediction

Proteomic databases

MaxQBiQ9BYD2.
PaxDbiQ9BYD2.
PRIDEiQ9BYD2.

PTM databases

PhosphoSiteiQ9BYD2.

Expressioni

Gene expression databases

ArrayExpressiQ9BYD2.
BgeeiQ9BYD2.
CleanExiHS_MRPL9.
GenevestigatoriQ9BYD2.

Organism-specific databases

HPAiHPA008579.

Interactioni

Protein-protein interaction databases

BioGridi122370. 28 interactions.
IntActiQ9BYD2. 5 interactions.
MINTiMINT-1392474.
STRINGi9606.ENSP00000357823.

Structurei

3D structure databases

ProteinModelPortaliQ9BYD2.
SMRiQ9BYD2. Positions 94-219.

Family & Domainsi

Sequence similaritiesi

Keywords - Domaini

Transit peptide

Phylogenomic databases

eggNOGiNOG311734.
HOGENOMiHOG000247066.
HOVERGENiHBG002704.
InParanoidiQ9BYD2.
KOiK02939.
OMAiVKFLKSC.
OrthoDBiEOG76DTTG.
PhylomeDBiQ9BYD2.
TreeFamiTF300170.

Family and domain databases

Gene3Di3.40.5.10. 1 hit.
InterProiIPR000244. Ribosomal_L9.
IPR009027. Ribosomal_L9/RNase_H1_N.
IPR020070. Ribosomal_L9_N.
[Graphical view]
PANTHERiPTHR21368. PTHR21368. 1 hit.
PfamiPF01281. Ribosomal_L9_N. 1 hit.
[Graphical view]
SUPFAMiSSF55658. SSF55658. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q9BYD2-1 [UniParc]FASTAAdd to Basket

« Hide

MAAPVVTAPG RALLRAGAGR LLRGGVQELL RPRHEGNAPD LACNFSLSQN    50
RGTVIVERWW KVPLAGEGRK PRLHRRHRVY KLVEDTKHRP KENLELILTQ 100
SVENVGVRGD LVSVKKSLGR NRLLPQGLAV YASPENKKLF EEEKLLRQEG 150
KLEKIQTKAG EATVKFLKSC RLEVGMKNNV KWELNPEIVA RHFFKNLGVV 200
VAPHTLKLPE EPITRWGEYW CEVTVNGLDT VRVPMSVVNF EKPKTKRYKY 250
WLAQQAAKAM APTSPQI 267
Length:267
Mass (Da):30,243
Last modified:October 14, 2008 - v2
Checksum:i3468214224FBD1B4
GO

Natural variant

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Natural varianti67 – 671E → G.
Corresponds to variant rs7007 [ dbSNP | Ensembl ].
VAR_028136
Natural varianti210 – 2101E → A.1 Publication
Corresponds to variant rs8480 [ dbSNP | Ensembl ].
VAR_028137

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AB049636 mRNA. Translation: BAB40841.1.
AK315459 mRNA. Translation: BAG37846.1.
AL589765 Genomic DNA. Translation: CAI17171.1.
CH471121 Genomic DNA. Translation: EAW53415.1.
BC004517 mRNA. Translation: AAH04517.1.
CCDSiCCDS1003.1.
RefSeqiNP_113608.1. NM_031420.2.
UniGeneiHs.288936.

Genome annotation databases

EnsembliENST00000368830; ENSP00000357823; ENSG00000143436.
GeneIDi65005.
KEGGihsa:65005.
UCSCiuc001eyv.3. human.

Polymorphism databases

DMDMi209572671.

Keywords - Coding sequence diversityi

Polymorphism

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AB049636 mRNA. Translation: BAB40841.1 .
AK315459 mRNA. Translation: BAG37846.1 .
AL589765 Genomic DNA. Translation: CAI17171.1 .
CH471121 Genomic DNA. Translation: EAW53415.1 .
BC004517 mRNA. Translation: AAH04517.1 .
CCDSi CCDS1003.1.
RefSeqi NP_113608.1. NM_031420.2.
UniGenei Hs.288936.

3D structure databases

ProteinModelPortali Q9BYD2.
SMRi Q9BYD2. Positions 94-219.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

BioGridi 122370. 28 interactions.
IntActi Q9BYD2. 5 interactions.
MINTi MINT-1392474.
STRINGi 9606.ENSP00000357823.

PTM databases

PhosphoSitei Q9BYD2.

Polymorphism databases

DMDMi 209572671.

Proteomic databases

MaxQBi Q9BYD2.
PaxDbi Q9BYD2.
PRIDEi Q9BYD2.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENST00000368830 ; ENSP00000357823 ; ENSG00000143436 .
GeneIDi 65005.
KEGGi hsa:65005.
UCSCi uc001eyv.3. human.

Organism-specific databases

CTDi 65005.
GeneCardsi GC01M151732.
HGNCi HGNC:14277. MRPL9.
HPAi HPA008579.
MIMi 611824. gene.
neXtProti NX_Q9BYD2.
PharmGKBi PA30991.
GenAtlasi Search...

Phylogenomic databases

eggNOGi NOG311734.
HOGENOMi HOG000247066.
HOVERGENi HBG002704.
InParanoidi Q9BYD2.
KOi K02939.
OMAi VKFLKSC.
OrthoDBi EOG76DTTG.
PhylomeDBi Q9BYD2.
TreeFami TF300170.

Miscellaneous databases

ChiTaRSi MRPL9. human.
GenomeRNAii 65005.
NextBioi 67188.
PROi Q9BYD2.
SOURCEi Search...

Gene expression databases

ArrayExpressi Q9BYD2.
Bgeei Q9BYD2.
CleanExi HS_MRPL9.
Genevestigatori Q9BYD2.

Family and domain databases

Gene3Di 3.40.5.10. 1 hit.
InterProi IPR000244. Ribosomal_L9.
IPR009027. Ribosomal_L9/RNase_H1_N.
IPR020070. Ribosomal_L9_N.
[Graphical view ]
PANTHERi PTHR21368. PTHR21368. 1 hit.
Pfami PF01281. Ribosomal_L9_N. 1 hit.
[Graphical view ]
SUPFAMi SSF55658. SSF55658. 1 hit.
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Structural compensation for the deficit of rRNA with proteins in the mammalian mitochondrial ribosome. Systematic analysis of protein components of the large ribosomal subunit from mammalian mitochondria."
    Suzuki T., Terasaki M., Takemoto-Hori C., Hanada T., Ueda T., Wada A., Watanabe K.
    J. Biol. Chem. 276:21724-21736(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA], VARIANT ALA-210.
  2. "Complete sequencing and characterization of 21,243 full-length human cDNAs."
    Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S.
    , Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.
    Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
  3. "The DNA sequence and biological annotation of human chromosome 1."
    Gregory S.G., Barlow K.F., McLay K.E., Kaul R., Swarbreck D., Dunham A., Scott C.E., Howe K.L., Woodfine K., Spencer C.C.A., Jones M.C., Gillson C., Searle S., Zhou Y., Kokocinski F., McDonald L., Evans R., Phillips K.
    , Atkinson A., Cooper R., Jones C., Hall R.E., Andrews T.D., Lloyd C., Ainscough R., Almeida J.P., Ambrose K.D., Anderson F., Andrew R.W., Ashwell R.I.S., Aubin K., Babbage A.K., Bagguley C.L., Bailey J., Beasley H., Bethel G., Bird C.P., Bray-Allen S., Brown J.Y., Brown A.J., Buckley D., Burton J., Bye J., Carder C., Chapman J.C., Clark S.Y., Clarke G., Clee C., Cobley V., Collier R.E., Corby N., Coville G.J., Davies J., Deadman R., Dunn M., Earthrowl M., Ellington A.G., Errington H., Frankish A., Frankland J., French L., Garner P., Garnett J., Gay L., Ghori M.R.J., Gibson R., Gilby L.M., Gillett W., Glithero R.J., Grafham D.V., Griffiths C., Griffiths-Jones S., Grocock R., Hammond S., Harrison E.S.I., Hart E., Haugen E., Heath P.D., Holmes S., Holt K., Howden P.J., Hunt A.R., Hunt S.E., Hunter G., Isherwood J., James R., Johnson C., Johnson D., Joy A., Kay M., Kershaw J.K., Kibukawa M., Kimberley A.M., King A., Knights A.J., Lad H., Laird G., Lawlor S., Leongamornlert D.A., Lloyd D.M., Loveland J., Lovell J., Lush M.J., Lyne R., Martin S., Mashreghi-Mohammadi M., Matthews L., Matthews N.S.W., McLaren S., Milne S., Mistry S., Moore M.J.F., Nickerson T., O'Dell C.N., Oliver K., Palmeiri A., Palmer S.A., Parker A., Patel D., Pearce A.V., Peck A.I., Pelan S., Phelps K., Phillimore B.J., Plumb R., Rajan J., Raymond C., Rouse G., Saenphimmachak C., Sehra H.K., Sheridan E., Shownkeen R., Sims S., Skuce C.D., Smith M., Steward C., Subramanian S., Sycamore N., Tracey A., Tromans A., Van Helmond Z., Wall M., Wallis J.M., White S., Whitehead S.L., Wilkinson J.E., Willey D.L., Williams H., Wilming L., Wray P.W., Wu Z., Coulson A., Vaudin M., Sulston J.E., Durbin R.M., Hubbard T., Wooster R., Dunham I., Carter N.P., McVean G., Ross M.T., Harrow J., Olson M.V., Beck S., Rogers J., Bentley D.R.
    Nature 441:315-321(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  4. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  5. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Lung.
  6. Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].

Entry informationi

Entry nameiRM09_HUMAN
AccessioniPrimary (citable) accession number: Q9BYD2
Secondary accession number(s): B2RD99, Q5SZR2, Q9BSW8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 13, 2001
Last sequence update: October 14, 2008
Last modified: July 9, 2014
This is version 110 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 1
    Human chromosome 1: entries, gene names and cross-references to MIM
  2. Human entries with polymorphisms or disease mutations
    List of human entries with polymorphisms or disease mutations
  3. Human polymorphisms and disease mutations
    Index of human polymorphisms and disease mutations
  4. MIM cross-references
    Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot
  5. Ribosomal proteins
    Ribosomal proteins families and list of entries
  6. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi