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Q9BYD1

- RM13_HUMAN

UniProt

Q9BYD1 - RM13_HUMAN

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Protein
39S ribosomal protein L13, mitochondrial
Gene
MRPL13
Organism
Homo sapiens (Human)
Status
Reviewed - Annotation score: 3 out of 5 - Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  1. poly(A) RNA binding Source: UniProtKB
  2. protein binding Source: UniProtKB
  3. structural constituent of ribosome Source: UniProtKB

GO - Biological processi

  1. translation Source: UniProtKB
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Names & Taxonomyi

Protein namesi
Recommended name:
39S ribosomal protein L13, mitochondrial
Short name:
L13mt
Short name:
MRP-L13
Gene namesi
Name:MRPL13
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
ProteomesiUP000005640: Chromosome 8

Organism-specific databases

HGNCiHGNC:14278. MRPL13.

Subcellular locationi

Mitochondrion 1 Publication

GO - Cellular componenti

  1. mitochondrial large ribosomal subunit Source: UniProtKB
  2. mitochondrial ribosome Source: UniProtKB
Complete GO annotation...

Keywords - Cellular componenti

Mitochondrion

Pathology & Biotechi

Organism-specific databases

PharmGKBiPA30942.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 17817839S ribosomal protein L13, mitochondrialUniRule annotation
PRO_0000133793Add
BLAST

Proteomic databases

MaxQBiQ9BYD1.
PaxDbiQ9BYD1.
PRIDEiQ9BYD1.

PTM databases

PhosphoSiteiQ9BYD1.

Expressioni

Gene expression databases

ArrayExpressiQ9BYD1.
BgeeiQ9BYD1.
CleanExiHS_MRPL13.
GenevestigatoriQ9BYD1.

Organism-specific databases

HPAiHPA060899.

Interactioni

Subunit structurei

Interacts with OXA1L By similarity.UniRule annotation

Protein-protein interaction databases

BioGridi118817. 35 interactions.
IntActiQ9BYD1. 3 interactions.
MINTiMINT-3064087.
STRINGi9606.ENSP00000306548.

Structurei

3D structure databases

ProteinModelPortaliQ9BYD1.
SMRiQ9BYD1. Positions 1-147.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG0102.
HOGENOMiHOG000225288.
HOVERGENiHBG036111.
InParanoidiQ9BYD1.
KOiK02871.
OMAiFARTWHI.
PhylomeDBiQ9BYD1.
TreeFamiTF312914.

Family and domain databases

Gene3Di3.90.1180.10. 1 hit.
HAMAPiMF_01366. Ribosomal_L13.
InterProiIPR005822. Ribosomal_L13.
IPR005823. Ribosomal_L13_bac-type.
IPR023563. Ribosomal_L13_CS.
IPR023564. Ribosomal_L13_dom.
[Graphical view]
PANTHERiPTHR11545. PTHR11545. 1 hit.
PfamiPF00572. Ribosomal_L13. 1 hit.
[Graphical view]
PIRSFiPIRSF002181. Ribosomal_L13. 1 hit.
SUPFAMiSSF52161. SSF52161. 1 hit.
TIGRFAMsiTIGR01066. rplM_bact. 1 hit.
PROSITEiPS00783. RIBOSOMAL_L13. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9BYD1-1 [UniParc]FASTAAdd to Basket

« Hide

MSSFSRAPQQ WATFARIWYL LDGKMQPPGK LAAMASIRLQ GLHKPVYHAL    50
SDCGDHVVIM NTRHIAFSGN KWEQKVYSSH TGYPGGFRQV TAAQLHLRDP 100
VAIVKLAIYG MLPKNLHRRT MMERLHLFPD EYIPEDILKN LVEELPQPRK 150
IPKRLDEYTQ EEIDAFPRLW TPPEDYRL 178
Length:178
Mass (Da):20,692
Last modified:June 1, 2001 - v1
Checksum:iAF4FD524CC234D52
GO

Sequence cautioni

The sequence AAF17202.1 differs from that shown. Reason: Frameshift at position 160.

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AB049640 mRNA. Translation: BAB40845.1.
AF112214 mRNA. Translation: AAF17202.1. Frameshift.
AK311924 mRNA. Translation: BAG34865.1.
CH471060 Genomic DNA. Translation: EAW92004.1.
BC009190 mRNA. Translation: AAH09190.1.
BC021744 mRNA. Translation: AAH21744.1.
CCDSiCCDS6332.1.
RefSeqiNP_054797.2. NM_014078.5.
UniGeneiHs.333823.

Genome annotation databases

EnsembliENST00000306185; ENSP00000306548; ENSG00000172172.
GeneIDi28998.
KEGGihsa:28998.
UCSCiuc003ypa.3. human.

Polymorphism databases

DMDMi22257023.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AB049640 mRNA. Translation: BAB40845.1 .
AF112214 mRNA. Translation: AAF17202.1 . Frameshift.
AK311924 mRNA. Translation: BAG34865.1 .
CH471060 Genomic DNA. Translation: EAW92004.1 .
BC009190 mRNA. Translation: AAH09190.1 .
BC021744 mRNA. Translation: AAH21744.1 .
CCDSi CCDS6332.1.
RefSeqi NP_054797.2. NM_014078.5.
UniGenei Hs.333823.

3D structure databases

ProteinModelPortali Q9BYD1.
SMRi Q9BYD1. Positions 1-147.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

BioGridi 118817. 35 interactions.
IntActi Q9BYD1. 3 interactions.
MINTi MINT-3064087.
STRINGi 9606.ENSP00000306548.

PTM databases

PhosphoSitei Q9BYD1.

Polymorphism databases

DMDMi 22257023.

Proteomic databases

MaxQBi Q9BYD1.
PaxDbi Q9BYD1.
PRIDEi Q9BYD1.

Protocols and materials databases

DNASUi 28998.
Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENST00000306185 ; ENSP00000306548 ; ENSG00000172172 .
GeneIDi 28998.
KEGGi hsa:28998.
UCSCi uc003ypa.3. human.

Organism-specific databases

CTDi 28998.
GeneCardsi GC08M121477.
HGNCi HGNC:14278. MRPL13.
HPAi HPA060899.
MIMi 610200. gene.
neXtProti NX_Q9BYD1.
PharmGKBi PA30942.
GenAtlasi Search...

Phylogenomic databases

eggNOGi COG0102.
HOGENOMi HOG000225288.
HOVERGENi HBG036111.
InParanoidi Q9BYD1.
KOi K02871.
OMAi FARTWHI.
PhylomeDBi Q9BYD1.
TreeFami TF312914.

Miscellaneous databases

GenomeRNAii 28998.
NextBioi 51932.
PROi Q9BYD1.
SOURCEi Search...

Gene expression databases

ArrayExpressi Q9BYD1.
Bgeei Q9BYD1.
CleanExi HS_MRPL13.
Genevestigatori Q9BYD1.

Family and domain databases

Gene3Di 3.90.1180.10. 1 hit.
HAMAPi MF_01366. Ribosomal_L13.
InterProi IPR005822. Ribosomal_L13.
IPR005823. Ribosomal_L13_bac-type.
IPR023563. Ribosomal_L13_CS.
IPR023564. Ribosomal_L13_dom.
[Graphical view ]
PANTHERi PTHR11545. PTHR11545. 1 hit.
Pfami PF00572. Ribosomal_L13. 1 hit.
[Graphical view ]
PIRSFi PIRSF002181. Ribosomal_L13. 1 hit.
SUPFAMi SSF52161. SSF52161. 1 hit.
TIGRFAMsi TIGR01066. rplM_bact. 1 hit.
PROSITEi PS00783. RIBOSOMAL_L13. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Structural compensation for the deficit of rRNA with proteins in the mammalian mitochondrial ribosome. Systematic analysis of protein components of the large ribosomal subunit from mammalian mitochondria."
    Suzuki T., Terasaki M., Takemoto-Hori C., Hanada T., Ueda T., Wada A., Watanabe K.
    J. Biol. Chem. 276:21724-21736(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA], SUBCELLULAR LOCATION.
  2. "A novel gene expressed in human adrenal gland."
    Ren S., Jiang C., Huang C., Li Y., Lin W., Zhou J., Yu Y., Xu S., Wang Y., Han Z., Chen Z., Fu G.
    Submitted (DEC-1998) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
    Tissue: Adrenal gland.
  3. "Complete sequencing and characterization of 21,243 full-length human cDNAs."
    Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S.
    , Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.
    Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Cerebellum.
  4. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  5. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Brain and Placenta.
  6. Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].

Entry informationi

Entry nameiRM13_HUMAN
AccessioniPrimary (citable) accession number: Q9BYD1
Secondary accession number(s): B2R4R8, Q9UI04
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 13, 2002
Last sequence update: June 1, 2001
Last modified: July 9, 2014
This is version 111 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 8
    Human chromosome 8: entries, gene names and cross-references to MIM
  2. MIM cross-references
    Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot
  3. Ribosomal proteins
    Ribosomal proteins families and list of entries
  4. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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