Reviewed,
UniProtKB/Swiss-Prot Q9BYB0 (SHAN3_HUMAN)
Last modified
June 16, 2009.
Version 61.
History...
Clusters with 100%,
90%,
50% identity |
Documents (5) |
Third-party data |
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Names and origin
| Protein names | Recommended name: SH3 and multiple ankyrin repeat domains protein 3 Short name=Shank3 Alternative name(s): Proline-rich synapse-associated protein 2 Short name=ProSAP2 | ||||
| Gene names |
| ||||
| Organism | Homo sapiens (Human) | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo |
Protein attributes
| Sequence length | 1741 AA. |
| Sequence status | Complete. |
| Sequence processing | The displayed sequence is not processed. |
| Protein existence | Evidence at protein level. |
General annotation (Comments)
| Function | Seems to be an adapter protein in the postsynaptic density (PSD) of excitatory synapses that interconnects receptors of the postsynaptic membrane including NMDA-type and metabotropic glutamate receptors via complexes with GKAP/PSD-95 and Homer, respectively, and the actin-based cytoskeleton. May play a role in the structural and functional organization of the dendritic spine and synaptic junction. |
| Subunit structure | May homomultimerize via its SAM domain By similarity. Interacts with DLGAP1/GKAP, MGLUR1A, MGLUR5 C-termini via its PDZ domain By similarity. Interacts with HOMER1, HOMER2, HOMER3 and CCTN/cortactin SH3 domain By similarity. Is part of a complex with DLG4/PSD-95 and DLGAP1/GKAP. Interacts with DBNL By similarity. Interacts with BAIAP2. |
| Subcellular location | Cytoplasm By similarity. Cell junction › synapse By similarity. Cell junction › synapse › postsynaptic cell membrane › postsynaptic density By similarity. Note: Postsynaptic density of neuronal cells By similarity. |
| Tissue specificity | Expressed in the cerebral cortex and the cerebellum. |
| Involvement in disease | A chromosomal aberration disrupting SHANK3/PSAP2 is responsible for the clinical features of chromosome 22q13.3 deletion syndrome [MIM:606232]. Translocation t(12;22)(q24.1;q13.3) with APPL2/DIP13B. The phenotype is characterized by neonatal hypotonia, global developmental delay, normal to accelerated growth, absent to severely delayed speech, autistic behavior and minor dysmorphic features. Defects in SHANK3 are a cause of autism spectrum disorders (ASD). ASD are characterized by impairments in reciprocal social interaction and communication as well as restricted and stereotyped patterns of interest and activities. ASD include forms with moderate to severe cognitive impairment and milder forms with higher cognitive ability (Asperger syndrome). Ref.7 |
| Sequence similarities | Contains 6 ANK repeats. Contains 1 PDZ (DHR) domain. Contains 1 SAM (sterile alpha motif) domain. Contains 1 SH3 domain. |
Ontologies
| Keywords | |
|---|---|
| Cellular component | Cell junction Cell membrane Cytoplasm Membrane Postsynaptic cell membrane Synapse |
| Coding sequence diversity | Alternative splicing Chromosomal rearrangement Polymorphism |
| Domain | ANK repeat Coiled coil Repeat SH3 domain SH3-binding |
| PTM | Phosphoprotein |
| Gene Ontology (GO) | |
| Cellular component | cell junction Inferred from electronic annotation. Source: UniProtKB-SubCell cytoplasmInferred from electronic annotation. Source: UniProtKB-SubCell postsynaptic densityInferred from electronic annotation. Source: UniProtKB-SubCell postsynaptic membraneInferred from electronic annotation. Source: UniProtKB-SubCell |
| Molecular function | SH3 domain binding Inferred from electronic annotation. Source: UniProtKB-KW |
| Complete GO annotation... | |
Binary interactions
With | Entry | #Exp. | IntAct | Notes |
|---|---|---|---|---|
| ABL1 | P00519 | 1 | EBI-1752330,EBI-375543 | |
| CRK | P46108 | 1 | EBI-1752330,EBI-886 | |
| FYN | P06241 | 1 | EBI-1752330,EBI-515315 | |
| GRB2 | P62993 | 1 | EBI-1752330,EBI-401755 | |
| NCK1 | P16333 | 1 | EBI-1752330,EBI-389883 | |
| PIK3R1 | P27986 | 1 | EBI-1752330,EBI-79464 | |
| PLCG1 | P19174 | 1 | EBI-1752330,EBI-79387 | |
| SRC | P12931 | 1 | EBI-1752330,EBI-621482 |
Alternative products
| This entry describes 2 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: Q9BYB0-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: Q9BYB0-2) The sequence of this isoform differs from the canonical sequence as follows: 1536-1544: Missing. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 1741 | 1741 | SH3 and multiple ankyrin repeat domains protein 3 | PRO_0000174675 | |||||
Regions | |||||||||
| Repeat | 148 – 178 | 31 | ANK 1 | ||||||
| Repeat | 182 – 211 | 30 | ANK 2 | ||||||
| Repeat | 215 – 245 | 31 | ANK 3 | ||||||
| Repeat | 249 – 278 | 30 | ANK 4 | ||||||
| Repeat | 282 – 311 | 30 | ANK 5 | ||||||
| Repeat | 315 – 345 | 31 | ANK 6 | ||||||
| Domain | 472 – 531 | 60 | SH3 | ||||||
| Domain | 572 – 666 | 95 | PDZ | ||||||
| Domain | 1678 – 1741 | 64 | SAM | ||||||
| Coiled coil | 1495 – 1515 | 21 | Potential | ||||||
| Motif | 1411 – 1417 | 7 | SH3-binding Potential | ||||||
| Compositional bias | 679 – 682 | 4 | Poly-Pro | ||||||
| Compositional bias | 720 – 723 | 4 | Poly-Ala | ||||||
| Compositional bias | 815 – 931 | 117 | Pro-rich | ||||||
| Compositional bias | 1233 – 1350 | 118 | Pro-rich | ||||||
Amino acid modifications | |||||||||
| Modified residue | 122 | 1 | Phosphotyrosine By similarity | ||||||
| Modified residue | 375 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 557 | 1 | Phosphotyrosine By similarity | ||||||
| Modified residue | 566 | 1 | Phosphotyrosine By similarity | ||||||
| Modified residue | 783 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 1159 | 1 | Phosphoserine Ref.8 | ||||||
| Modified residue | 1163 | 1 | Phosphoserine Ref.8 | ||||||
| Modified residue | 1644 | 1 | Phosphoserine By similarity | ||||||
Natural variations | |||||||||
| Alternative sequence | 1536 – 1544 | 9 | Missing in isoform 2. | VSP_026160 | |||||
| Natural variant | 12 | 1 | R → C Ref.7 | VAR_032804 | |||||
| Natural variant | 198 | 1 | A → G Ref.7 | VAR_032805 | |||||
| Natural variant | 224 | 1 | A → T Ref.7 | VAR_032806 | |||||
| Natural variant | 245 | 1 | I → T: dbSNP rs9616915. | VAR_032807 | |||||
| Natural variant | 300 | 1 | R → C Ref.7 | VAR_032808 | |||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "The DNA sequence of human chromosome 22." Dunham I., Hunt A.R., Collins J.E., Bruskiewich R., Beare D.M., Clamp M., Smink L.J., Ainscough R., Almeida J.P., Babbage A.K., Bagguley C., Bailey J., Barlow K.F., Bates K.N., Beasley O.P., Bird C.P., Blakey S.E., Bridgeman A.M. Wright H.Nature 402:489-495(1999) [PubMed: 10591208] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [2] | "Identification of novel transcribed sequences on human chromosome 22 by expressed sequence tag mapping." Hirosawa M., Nagase T., Murahashi Y., Kikuno R., Ohara O. DNA Res. 8:1-9(2001) [PubMed: 11258795] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 936-1741 (ISOFORM 2). |
| [3] | "The nucleotide sequence of a long cDNA clone isolated from human spleen." Ohara O., Nagase T., Kikuno R., Okumura K. Submitted (JAN-2002) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 963-1741 (ISOFORM 2). Tissue: Spleen. |
| [4] | "Disruption of the ProSAP2 gene in a t(12;22)(q24.1;q13.3) is associated with the 22q13.3 deletion syndrome." Bonaglia M.C., Giorda R., Borgatti R., Felisari G., Gagliardi C., Selicorni A., Zuffardi O. Am. J. Hum. Genet. 69:261-268(2001) [PubMed: 11431708] [Abstract] Cited for: CHROMOSOMAL TRANSLOCATION WITH APPL2. |
| [5] | "The Shank family of scaffold proteins." Sheng M., Kim E. J. Cell Sci. 113:1851-1856(2000) [PubMed: 10806096] [Abstract] Cited for: REVIEW. |
| [6] | "The insulin receptor substrate IRSp53 links postsynaptic shank1 to the small G-protein cdc42." Soltau M., Richter D., Kreienkamp H.-J. Mol. Cell. Neurosci. 21:575-583(2002) [PubMed: 12504591] [Abstract] Cited for: INTERACTION WITH BAIAP2. |
| [7] | "Mutations in the gene encoding the synaptic scaffolding protein SHANK3 are associated with autism spectrum disorders." Durand C.M., Betancur C., Boeckers T.M., Bockmann J., Chaste P., Fauchereau F., Nygren G., Rastam M., Gillberg I.C., Anckarsaeter H., Sponheim E., Goubran-Botros H., Delorme R., Chabane N., Mouren-Simeoni M.-C., de Mas P., Bieth E., Roge B. Bourgeron T.Nat. Genet. 39:25-27(2007) [PubMed: 17173049] [Abstract] Cited for: INVOLVEMENT IN ASD, VARIANTS CYS-12; GLY-198; THR-224 AND CYS-300. |
| [8] | "Phosphoproteome of resting human platelets." Zahedi R.P., Lewandrowski U., Wiesner J., Wortelkamp S., Moebius J., Schuetz C., Walter U., Gambaryan S., Sickmann A. J. Proteome Res. 7:526-534(2008) [PubMed: 18088087] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-1159 AND SER-1163, MASS SPECTROMETRY. Tissue: Platelet. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |
|---|---|
| AC000050 Genomic DNA. No translation available. AC000036 Genomic DNA. No translation available. AB051437 mRNA. Translation: BAB33320.1. AK074038 mRNA. Translation: BAB84864.1. | |
| IPI | IPI00019794. IPI00847618. |
| UniGene | Hs.149035 |
3D structure databases | |
| SMR | Q9BYB0. Positions 731-794. |
| ModBase | Search... |
Protein-protein interaction databases | |
| IntAct | Q9BYB0. 8 interactions. |
PTM databases | |
| PhosphoSite | Q9BYB0. |
Proteomic databases | |
| PRIDE | Q9BYB0. |
Genome annotation databases | |
| Ensembl | ENSG00000099882. Homo sapiens. [Contig view] |
Organism-specific databases | |
| GeneCards | GC22P049402. |
| H-InvDB | HIX0016621. |
| HGNC | HGNC:14294. SHANK3. |
| HPA | HPA003446. |
| MIM | 606230. gene. 606232. phenotype. |
| Orphanet | 48652. Monosomy 22q13. |
| PharmGKB | PA37866. |
| HUGE | Search... |
| GenAtlas | Search... |
Phylogenomic databases | |
| HOGENOM | Q9BYB0. |
| HOVERGEN | Q9BYB0. |
Enzyme and pathway databases | |
| Pathway_Interaction_DB | ret_pathway. Signaling events regulated by Ret tyrosine kinase. |
Gene expression databases | |
| ArrayExpress | Q9BYB0. |
| Bgee | Q9BYB0. |
| CleanEx | HS_SHANK3. |
| GermOnline | ENSG00000099882. Homo sapiens. |
Family and domain databases | |
| InterPro | IPR002110. ANK. IPR001478. PDZ/DHR/GLGF. IPR001660. SAM. IPR013761. SAM_type. IPR011511. SH3_2. IPR001452. SH3_domain. [Graphical view] |
| Gene3D | G3DSA:1.25.40.20. ANK. 1 hit. G3DSA:1.10.150.50. SAM_type. 1 hit. |
| Pfam | PF00023. Ank. 5 hits. PF00595. PDZ. 1 hit. PF00536. SAM_1. 1 hit. PF07653. SH3_2. 1 hit. [Graphical view] |
| ProDom | PD000066. SH3. 1 hit. [Graphical view] [Entries sharing at least one domain] |
| SMART | SM00248. ANK. 5 hits. SM00228. PDZ. 1 hit. SM00454. SAM. 1 hit. SM00326. SH3. 1 hit. [Graphical view] |
| PROSITE | PS50297. ANK_REP_REGION. 1 hit. PS50088. ANK_REPEAT. 4 hits. PS50106. PDZ. 1 hit. PS50105. SAM_DOMAIN. 1 hit. PS50002. SH3. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Other Resources | |
| SOURCE | Search... |
Entry information
| Entry name | SHAN3_HUMAN | ||||||||
| Accession | Primary (citable) accession number: Q9BYB0 Secondary accession number(s): Q8TET3 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation project | HPI (Human Proteome Initiative) | ||||||||
Relevant documents
| Human chromosome 22 Human chromosome 22: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| SIMILARITY comments Index of protein domains and families |

Clusters with


