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Protein

Testis-expressed sequence 13A protein

Gene

TEX13A

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri376 – 40025RanBP2-typePROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

Complete GO annotation...

Keywords - Ligandi

Metal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
Testis-expressed sequence 13A protein
Gene namesi
Name:TEX13A
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
Proteomesi
  • UP000005640 Componenti: Chromosome X

Organism-specific databases

HGNCiHGNC:11735. TEX13A.

Pathology & Biotechi

Organism-specific databases

PharmGKBiPA36452.

Polymorphism and mutation databases

BioMutaiTEX13A.
DMDMi50401671.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 409409Testis-expressed sequence 13A proteinPRO_0000065700Add
BLAST

Proteomic databases

MaxQBiQ9BXU3.
PaxDbiQ9BXU3.
PeptideAtlasiQ9BXU3.
PRIDEiQ9BXU3.

PTM databases

iPTMnetiQ9BXU3.
PhosphoSiteiQ9BXU3.

Expressioni

Tissue specificityi

Testis specific.

Gene expression databases

BgeeiQ9BXU3.
CleanExiHS_TEX13A.
GenevisibleiQ9BXU3. HS.

Interactioni

Binary interactionsi

WithEntry#Exp.IntActNotes
TBC1D10AQ9BXI63EBI-10301068,EBI-7815040

Protein-protein interaction databases

BioGridi121091. 19 interactions.
IntActiQ9BXU3. 1 interaction.
STRINGi9606.ENSP00000399753.

Structurei

3D structure databases

ProteinModelPortaliQ9BXU3.
SMRiQ9BXU3. Positions 375-401.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the TEX13 family.
Contains 1 RanBP2-type zinc finger.PROSITE-ProRule annotation

Zinc finger

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri376 – 40025RanBP2-typePROSITE-ProRule annotationAdd
BLAST

Keywords - Domaini

Zinc-finger

Phylogenomic databases

eggNOGiKOG4198. Eukaryota.
ENOG410YNCK. LUCA.
GeneTreeiENSGT00390000008046.
HOGENOMiHOG000231392.
HOVERGENiHBG079292.
InParanoidiQ9BXU3.
OMAiNFSRRDT.
OrthoDBiEOG71ZP2K.
PhylomeDBiQ9BXU3.
TreeFamiTF337208.

Family and domain databases

Gene3Di4.10.1060.10. 1 hit.
InterProiIPR028193. TEX13.
IPR001876. Znf_RanBP2.
[Graphical view]
PfamiPF15186. TEX13. 1 hit.
[Graphical view]
SUPFAMiSSF90209. SSF90209. 1 hit.
PROSITEiPS01358. ZF_RANBP2_1. 1 hit.
PS50199. ZF_RANBP2_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9BXU3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MALRPEDPSS GFRHSNVVAF INEKMARHTK GPEFYLENIS LSWEKVEDKL
60 70 80 90 100
RAILEDSEVP SEVKEACTWG SLALGVRFAH RQAQLQRHRV RWLHGFAKLH
110 120 130 140 150
KSAAQALASD LKKLREQQET ERKEAASRLR MAQTSLVEVQ KERDKELVSP
160 170 180 190 200
HEWEQGAGWP GLATAGGVCT EGAAEEEEEA AVAAAGAAGG KGAEEEQRDV
210 220 230 240 250
EVVAAPVEAM APPVEAGAAP METQFPHVEA RAASMETTEK LERILLQLLG
260 270 280 290 300
DADQEKYTYW GQKEGDLRSV ETATSYFSGT TNPWSRASSE PLPVQLPASY
310 320 330 340 350
SYSYSSPFSS FSDIPTISPP QATVTAPVPP QLPSDWEAFD TSLWSDGGPH
360 370 380 390 400
RIDHQEHPRD RRYSEPHQQR PPVYRRPGDW DCPWCNAVNF SRRDTCFDCG

KGIWLQKPH
Length:409
Mass (Da):45,583
Last modified:June 1, 2001 - v1
Checksum:i6EC20D9DF945299F
GO

Sequence cautioni

The sequence CAI41996.1 differs from that shown. Reason: Erroneous gene model prediction. Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF285597 mRNA. Translation: AAK31976.1.
Z74477 Genomic DNA. Translation: CAI41996.1. Sequence problems.
BC042547 mRNA. Translation: AAH42547.1.
BC108734 mRNA. Translation: AAI08735.1.
CCDSiCCDS76005.1.
RefSeqiNP_001278206.1. NM_001291277.1.
NP_112564.1. NM_031274.4.
UniGeneiHs.567543.

Genome annotation databases

EnsembliENST00000600991; ENSP00000471604; ENSG00000268629.
ENST00000609007; ENSP00000477478; ENSG00000268629.
GeneIDi56157.
KEGGihsa:56157.
UCSCiuc033epz.1. human.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF285597 mRNA. Translation: AAK31976.1.
Z74477 Genomic DNA. Translation: CAI41996.1. Sequence problems.
BC042547 mRNA. Translation: AAH42547.1.
BC108734 mRNA. Translation: AAI08735.1.
CCDSiCCDS76005.1.
RefSeqiNP_001278206.1. NM_001291277.1.
NP_112564.1. NM_031274.4.
UniGeneiHs.567543.

3D structure databases

ProteinModelPortaliQ9BXU3.
SMRiQ9BXU3. Positions 375-401.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi121091. 19 interactions.
IntActiQ9BXU3. 1 interaction.
STRINGi9606.ENSP00000399753.

PTM databases

iPTMnetiQ9BXU3.
PhosphoSiteiQ9BXU3.

Polymorphism and mutation databases

BioMutaiTEX13A.
DMDMi50401671.

Proteomic databases

MaxQBiQ9BXU3.
PaxDbiQ9BXU3.
PeptideAtlasiQ9BXU3.
PRIDEiQ9BXU3.

Protocols and materials databases

DNASUi56157.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000600991; ENSP00000471604; ENSG00000268629.
ENST00000609007; ENSP00000477478; ENSG00000268629.
GeneIDi56157.
KEGGihsa:56157.
UCSCiuc033epz.1. human.

Organism-specific databases

CTDi56157.
GeneCardsiTEX13A.
HGNCiHGNC:11735. TEX13A.
MIMi300312. gene.
neXtProtiNX_Q9BXU3.
PharmGKBiPA36452.
GenAtlasiSearch...

Phylogenomic databases

eggNOGiKOG4198. Eukaryota.
ENOG410YNCK. LUCA.
GeneTreeiENSGT00390000008046.
HOGENOMiHOG000231392.
HOVERGENiHBG079292.
InParanoidiQ9BXU3.
OMAiNFSRRDT.
OrthoDBiEOG71ZP2K.
PhylomeDBiQ9BXU3.
TreeFamiTF337208.

Miscellaneous databases

GenomeRNAii56157.
PROiQ9BXU3.
SOURCEiSearch...

Gene expression databases

BgeeiQ9BXU3.
CleanExiHS_TEX13A.
GenevisibleiQ9BXU3. HS.

Family and domain databases

Gene3Di4.10.1060.10. 1 hit.
InterProiIPR028193. TEX13.
IPR001876. Znf_RanBP2.
[Graphical view]
PfamiPF15186. TEX13. 1 hit.
[Graphical view]
SUPFAMiSSF90209. SSF90209. 1 hit.
PROSITEiPS01358. ZF_RANBP2_1. 1 hit.
PS50199. ZF_RANBP2_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "An abundance of X-linked genes expressed in spermatogonia."
    Wang P.J., McCarrey J.R., Yang F., Page D.C.
    Nat. Genet. 27:422-426(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
    Tissue: Testis.
  2. "The DNA sequence of the human X chromosome."
    Ross M.T., Grafham D.V., Coffey A.J., Scherer S., McLay K., Muzny D., Platzer M., Howell G.R., Burrows C., Bird C.P., Frankish A., Lovell F.L., Howe K.L., Ashurst J.L., Fulton R.S., Sudbrak R., Wen G., Jones M.C.
    , Hurles M.E., Andrews T.D., Scott C.E., Searle S., Ramser J., Whittaker A., Deadman R., Carter N.P., Hunt S.E., Chen R., Cree A., Gunaratne P., Havlak P., Hodgson A., Metzker M.L., Richards S., Scott G., Steffen D., Sodergren E., Wheeler D.A., Worley K.C., Ainscough R., Ambrose K.D., Ansari-Lari M.A., Aradhya S., Ashwell R.I., Babbage A.K., Bagguley C.L., Ballabio A., Banerjee R., Barker G.E., Barlow K.F., Barrett I.P., Bates K.N., Beare D.M., Beasley H., Beasley O., Beck A., Bethel G., Blechschmidt K., Brady N., Bray-Allen S., Bridgeman A.M., Brown A.J., Brown M.J., Bonnin D., Bruford E.A., Buhay C., Burch P., Burford D., Burgess J., Burrill W., Burton J., Bye J.M., Carder C., Carrel L., Chako J., Chapman J.C., Chavez D., Chen E., Chen G., Chen Y., Chen Z., Chinault C., Ciccodicola A., Clark S.Y., Clarke G., Clee C.M., Clegg S., Clerc-Blankenburg K., Clifford K., Cobley V., Cole C.G., Conquer J.S., Corby N., Connor R.E., David R., Davies J., Davis C., Davis J., Delgado O., Deshazo D., Dhami P., Ding Y., Dinh H., Dodsworth S., Draper H., Dugan-Rocha S., Dunham A., Dunn M., Durbin K.J., Dutta I., Eades T., Ellwood M., Emery-Cohen A., Errington H., Evans K.L., Faulkner L., Francis F., Frankland J., Fraser A.E., Galgoczy P., Gilbert J., Gill R., Gloeckner G., Gregory S.G., Gribble S., Griffiths C., Grocock R., Gu Y., Gwilliam R., Hamilton C., Hart E.A., Hawes A., Heath P.D., Heitmann K., Hennig S., Hernandez J., Hinzmann B., Ho S., Hoffs M., Howden P.J., Huckle E.J., Hume J., Hunt P.J., Hunt A.R., Isherwood J., Jacob L., Johnson D., Jones S., de Jong P.J., Joseph S.S., Keenan S., Kelly S., Kershaw J.K., Khan Z., Kioschis P., Klages S., Knights A.J., Kosiura A., Kovar-Smith C., Laird G.K., Langford C., Lawlor S., Leversha M., Lewis L., Liu W., Lloyd C., Lloyd D.M., Loulseged H., Loveland J.E., Lovell J.D., Lozado R., Lu J., Lyne R., Ma J., Maheshwari M., Matthews L.H., McDowall J., McLaren S., McMurray A., Meidl P., Meitinger T., Milne S., Miner G., Mistry S.L., Morgan M., Morris S., Mueller I., Mullikin J.C., Nguyen N., Nordsiek G., Nyakatura G., O'dell C.N., Okwuonu G., Palmer S., Pandian R., Parker D., Parrish J., Pasternak S., Patel D., Pearce A.V., Pearson D.M., Pelan S.E., Perez L., Porter K.M., Ramsey Y., Reichwald K., Rhodes S., Ridler K.A., Schlessinger D., Schueler M.G., Sehra H.K., Shaw-Smith C., Shen H., Sheridan E.M., Shownkeen R., Skuce C.D., Smith M.L., Sotheran E.C., Steingruber H.E., Steward C.A., Storey R., Swann R.M., Swarbreck D., Tabor P.E., Taudien S., Taylor T., Teague B., Thomas K., Thorpe A., Timms K., Tracey A., Trevanion S., Tromans A.C., d'Urso M., Verduzco D., Villasana D., Waldron L., Wall M., Wang Q., Warren J., Warry G.L., Wei X., West A., Whitehead S.L., Whiteley M.N., Wilkinson J.E., Willey D.L., Williams G., Williams L., Williamson A., Williamson H., Wilming L., Woodmansey R.L., Wray P.W., Yen J., Zhang J., Zhou J., Zoghbi H., Zorilla S., Buck D., Reinhardt R., Poustka A., Rosenthal A., Lehrach H., Meindl A., Minx P.J., Hillier L.W., Willard H.F., Wilson R.K., Waterston R.H., Rice C.M., Vaudin M., Coulson A., Nelson D.L., Weinstock G., Sulston J.E., Durbin R.M., Hubbard T., Gibbs R.A., Beck S., Rogers J., Bentley D.R.
    Nature 434:325-337(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  3. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Brain.

Entry informationi

Entry nameiTX13A_HUMAN
AccessioniPrimary (citable) accession number: Q9BXU3
Secondary accession number(s): B1B1G8, Q32NB6
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 19, 2004
Last sequence update: June 1, 2001
Last modified: July 6, 2016
This is version 106 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome X
    Human chromosome X: entries, gene names and cross-references to MIM
  2. MIM cross-references
    Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.