Reviewed,
UniProtKB/Swiss-Prot Q9BXJ5 (C1QT2_HUMAN)
Last modified
June 16, 2009.
Version 69.
History...
Clusters with 100%,
90%,
50% identity |
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Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents
Names and origin
| Protein names | Recommended name: Complement C1q tumor necrosis factor-related protein 2 | ||||||
| Gene names |
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| Organism | Homo sapiens (Human) | ||||||
| Taxonomic identifier | 9606 [NCBI] | ||||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo |
Protein attributes
| Sequence length | 285 AA. |
| Sequence status | Complete. |
| Sequence processing | The displayed sequence is further processed into a mature form. |
| Protein existence | Evidence at transcript level. |
General annotation (Comments)
| Subcellular location | Secreted Potential. |
| Sequence similarities | Contains 1 C1q domain. Contains 1 collagen-like domain. |
Ontologies
| Keywords | |
|---|---|
| Cellular component | Secreted |
| Domain | Collagen Signal |
| Gene Ontology (GO) | |
| None. [Check GOA] | |
Sequence annotation (Features)
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Homo sapiens complement-c1q tumor necrosis factor-related protein." Piddington C.S., Bishop P. Submitted (DEC-2000) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [MRNA]. |
| [2] | "The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment." Clark H.F., Gurney A.L., Abaya E., Baker K., Baldwin D.T., Brush J., Chen J., Chow B., Chui C., Crowley C., Currell B., Deuel B., Dowd P., Eaton D., Foster J.S., Grimaldi C., Gu Q., Hass P.E. Gray A.M.Genome Res. 13:2265-2270(2003) [PubMed: 12975309] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. |
| [3] | "The DNA sequence and comparative analysis of human chromosome 5." Schmutz J., Martin J., Terry A., Couronne O., Grimwood J., Lowry S., Gordon L.A., Scott D., Xie G., Huang W., Hellsten U., Tran-Gyamfi M., She X., Prabhakar S., Aerts A., Altherr M., Bajorek E., Black S. Rubin E.M.Nature 431:268-274(2004) [PubMed: 15372022] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [4] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed: 15489334] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Tissue: Brain and Muscle. |
Cross-references
Sequence databases | |
|---|---|
| AF329836 mRNA. Translation: AAK17960.1. AY358839 mRNA. Translation: AAQ89198.1. AC091842 Genomic DNA. No translation available. AC112191 Genomic DNA. No translation available. BC011699 mRNA. Translation: AAH11699.1. BC054506 mRNA. Translation: AAH54506.1. | |
| IPI | IPI00873947. |
| RefSeq | NP_114114.2. |
| UniGene | Hs.110062 |
3D structure databases | |
| HSSP | HSSP built from PDB template 1C28 based on UniProtKB Q60994. |
| ModBase | Search... |
Proteomic databases | |
| PRIDE | Q9BXJ5. |
Genome annotation databases | |
| Ensembl | ENSG00000145861. Homo sapiens. [Contig view] |
| GeneID | 114898. |
| KEGG | hsa:114898. |
Organism-specific databases | |
| GeneCards | GC05M159707. |
| H-InvDB | HIX0005376. |
| HGNC | HGNC:14325. C1QTNF2. |
| PharmGKB | PA25629. |
| GenAtlas | Search... |
Phylogenomic databases | |
| HOGENOM | Q9BXJ5. |
| HOVERGEN | Q9BXJ5. |
Gene expression databases | |
| ArrayExpress | Q9BXJ5. |
| Bgee | Q9BXJ5. |
| CleanEx | HS_C1QTNF2. |
| GermOnline | ENSG00000145861. Homo sapiens. |
Family and domain databases | |
| InterPro | IPR001073. C1q. IPR008160. Collagen. IPR008983. Tumour_necrosis_fac-like. [Graphical view] |
| Gene3D | G3DSA:2.60.120.40. Tumour_necrosis_fac-like. 1 hit. |
| Pfam | PF00386. C1q. 1 hit. PF01391. Collagen. 2 hits. [Graphical view] |
| PRINTS | PR00007. COMPLEMNTC1Q. |
| SMART | SM00110. C1Q. 1 hit. [Graphical view] |
| PROSITE | PS50871. C1Q. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Other Resources | |
| NextBio | 79402. |
Entry information
| Entry name | C1QT2_HUMAN | ||||||||
| Accession | Primary (citable) accession number: Q9BXJ5 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation project | HPI (Human Proteome Initiative) | ||||||||
Relevant documents
| Human chromosome 5 Human chromosome 5: entries, gene names and cross-references to MIM |
| SIMILARITY comments Index of protein domains and families |

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