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Q9BVL2

- NUPL1_HUMAN

UniProt

Q9BVL2 - NUPL1_HUMAN

Protein

Nucleoporin p58/p45

Gene

NUPL1

Organism
Homo sapiens (Human)
Status
Reviewed - Annotation score: 5 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 116 (01 Oct 2014)
      Sequence version 1 (01 Jun 2001)
      Previous versions | rss
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    Functioni

    Component of the nuclear pore complex, a complex required for the trafficking across the nuclear membrane.By similarity

    GO - Molecular functioni

    1. nucleocytoplasmic transporter activity Source: Ensembl
    2. protein binding Source: IntAct

    GO - Biological processi

    1. carbohydrate metabolic process Source: Reactome
    2. cytokine-mediated signaling pathway Source: Reactome
    3. glucose transport Source: Reactome
    4. hexose transport Source: Reactome
    5. mitotic cell cycle Source: Reactome
    6. mitotic nuclear envelope disassembly Source: Reactome
    7. mRNA transport Source: UniProtKB-KW
    8. protein transport Source: UniProtKB-KW
    9. regulation of glucose transport Source: Reactome
    10. small molecule metabolic process Source: Reactome
    11. transmembrane transport Source: Reactome
    12. viral process Source: Reactome

    Keywords - Biological processi

    mRNA transport, Protein transport, Translocation, Transport

    Enzyme and pathway databases

    ReactomeiREACT_115831. ISG15 antiviral mechanism.
    REACT_163931. Nuclear Pore Complex (NPC) Disassembly.
    REACT_6190. Rev-mediated nuclear export of HIV RNA.
    REACT_6804. Regulation of Glucokinase by Glucokinase Regulatory Protein.
    REACT_7991. Vpr-mediated nuclear import of PICs.
    REACT_9395. Nuclear import of Rev protein.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Nucleoporin p58/p45
    Alternative name(s):
    Nucleoporin-like protein 1
    Gene namesi
    Name:NUPL1
    Synonyms:KIAA0410
    OrganismiHomo sapiens (Human)
    Taxonomic identifieri9606 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
    ProteomesiUP000005640: Chromosome 13

    Organism-specific databases

    HGNCiHGNC:20261. NUPL1.

    Subcellular locationi

    Nucleusnuclear pore complex By similarity. Nucleus membrane By similarity; Peripheral membrane protein By similarity; Cytoplasmic side By similarity. Nucleus membrane By similarity; Peripheral membrane protein By similarity; Nucleoplasmic side By similarity
    Note: Biased towards cytoplasmic side. Central region of the nuclear pore complex, within the transporter By similarity.By similarity

    GO - Cellular componenti

    1. nuclear envelope Source: Reactome
    2. nuclear membrane Source: UniProtKB-SubCell
    3. nuclear pore Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    Membrane, Nuclear pore complex, Nucleus

    Pathology & Biotechi

    Organism-specific databases

    PharmGKBiPA134981903.

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 599599Nucleoporin p58/p45PRO_0000204892Add
    BLAST

    Amino acid modifications

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Modified residuei331 – 3311Phosphothreonine1 Publication

    Post-translational modificationi

    O-glycosylated.By similarity

    Keywords - PTMi

    Glycoprotein, Phosphoprotein

    Proteomic databases

    MaxQBiQ9BVL2.
    PaxDbiQ9BVL2.
    PRIDEiQ9BVL2.

    PTM databases

    PhosphoSiteiQ9BVL2.

    Expressioni

    Gene expression databases

    ArrayExpressiQ9BVL2.
    BgeeiQ9BVL2.
    CleanExiHS_NUPL1.
    GenevestigatoriQ9BVL2.

    Organism-specific databases

    HPAiHPA039360.

    Interactioni

    Subunit structurei

    Component of the p62 complex, a complex at least composed of NUP62, NUP54, and NUPL1. Interacts with NUTF2. Interacts with SRP1-alpha and Importin p97 proteins when they are together, but not with SRP1-alpha protein alone By similarity.By similarity

    Binary interactionsi

    WithEntry#Exp.IntActNotes
    HTTP428584EBI-2811583,EBI-466029

    Protein-protein interaction databases

    BioGridi115157. 9 interactions.
    IntActiQ9BVL2. 6 interactions.
    STRINGi9606.ENSP00000371155.

    Structurei

    3D structure databases

    ProteinModelPortaliQ9BVL2.
    SMRiQ9BVL2. Positions 341-426.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Repeati7 – 821
    Repeati30 – 3122
    Repeati44 – 4523
    Repeati63 – 6424
    Repeati68 – 6925
    Repeati488 – 48926
    Repeati492 – 49327
    Repeati513 – 51428
    Repeati519 – 52029
    Repeati529 – 530210
    Repeati531 – 532211
    Repeati545 – 546212
    Repeati568 – 569213
    Repeati578 – 579214

    Region

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Regioni7 – 57957314 X 2 AA repeats of F-GAdd
    BLAST

    Coiled coil

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Coiled coili256 – 27621Sequence AnalysisAdd
    BLAST
    Coiled coili314 – 38168Sequence AnalysisAdd
    BLAST

    Domaini

    Contains FG repeats.

    Sequence similaritiesi

    Belongs to the NUPL1 family.Curated

    Keywords - Domaini

    Coiled coil, Repeat

    Phylogenomic databases

    eggNOGiNOG148149.
    HOGENOMiHOG000273874.
    HOVERGENiHBG052703.
    InParanoidiQ9BVL2.
    KOiK14307.
    OMAiYRKTFLG.
    OrthoDBiEOG7H1JN7.
    PhylomeDBiQ9BVL2.
    TreeFamiTF106502.

    Family and domain databases

    InterProiIPR024882. Nucleoporin_p58/p45.
    [Graphical view]
    PANTHERiPTHR13437. PTHR13437. 1 hit.

    Sequences (3)i

    Sequence statusi: Complete.

    This entry describes 3 isoformsi produced by alternative splicing. Align

    Isoform 1 (identifier: Q9BVL2-1) [UniParc]FASTAAdd to Basket

    Also known as: p58

    This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

    « Hide

    MSTGFSFGSG TLGSTTVAAG GTSTGGVFSF GTGASSNPSV GLNFGNLGST    50
    STPATTSAPS SGFGTGLFGS KPATGFTLGG TNTGIATTIT TGLTLGTPAT 100
    TSAATTGFSL GFNKPAASAT PFALPITSTS ASGLTLSSAL TSTPAASTGF 150
    TLNNLGGTTA TTTTASTGLS LGGALAGLGG SLFQSTNTGT SGLGQNALGL 200
    TLGTTAATST AGNEGLGGID FSSSSDKKSD KTGTRPEDSK ALKDENLPPV 250
    ICQDVENLQK FVKEQKQVQE EISRMSSKAM LKVQEDIKAL KQLLSLAANG 300
    IQRNTLNIDK LKIETAQELK NAEIALRTQK TPPGLQHEYA APADYFRILV 350
    QQFEVQLQQY RQQIEELENH LATQANNSHI TPQDLSMAMQ KIYQTFVALA 400
    AQLQSIHENV KVLKEQYLGY RKMFLGDAVD VFETRRAEAK KWQNTPRVTT 450
    GPTPFSTMPN AAAVAMAATL TQQQQPATGP QPSLGVSFGT PFGSGIGTGL 500
    QSSGLGSSNL GGFGTSSGFG CSTTGASTFG FGTTNKPSGS LSAGFGSSST 550
    SGFNFSNPGI TASAGLTFGV SNPASAGFGT GGQLLQLKKP PAGNKRGKR 599
    Length:599
    Mass (Da):60,897
    Last modified:June 1, 2001 - v1
    Checksum:i2CC32E2A1B9E5132
    GO
    Isoform 2 (identifier: Q9BVL2-2) [UniParc]FASTAAdd to Basket

    The sequence of this isoform differs from the canonical sequence as follows:
         480-485: PQPSLG → LNAFKL
         486-599: Missing.

    Show »
    Length:485
    Mass (Da):50,210
    Checksum:iFC22003B927D904F
    GO
    Isoform 3 (identifier: Q9BVL2-3) [UniParc]FASTAAdd to Basket

    The sequence of this isoform differs from the canonical sequence as follows:
         84-95: Missing.

    Note: No experimental confirmation available.

    Show »
    Length:587
    Mass (Da):59,754
    Checksum:i741B3A6CA2FAE06A
    GO

    Sequence cautioni

    The sequence BAA23706.2 differs from that shown. Reason: Erroneous initiation.

    Natural variant

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Natural varianti34 – 341A → T.1 Publication
    Corresponds to variant rs12871898 [ dbSNP | Ensembl ].
    VAR_050570
    Natural varianti166 – 1661S → P.
    Corresponds to variant rs12871608 [ dbSNP | Ensembl ].
    VAR_050571

    Alternative sequence

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Alternative sequencei84 – 9512Missing in isoform 3. 1 PublicationVSP_045658Add
    BLAST
    Alternative sequencei480 – 4856PQPSLG → LNAFKL in isoform 2. 1 PublicationVSP_007946
    Alternative sequencei486 – 599114Missing in isoform 2. 1 PublicationVSP_007947Add
    BLAST

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AB007870 mRNA. Translation: BAA23706.2. Different initiation.
    AK302946 mRNA. Translation: BAG64103.1.
    AL138958, AL590787, AL646102 Genomic DNA. Translation: CAH71290.1.
    AL590787, AL138958, AL646102 Genomic DNA. Translation: CAI39898.1.
    AL590787 Genomic DNA. Translation: CAI39901.1.
    AL646102, AL138958, AL590787 Genomic DNA. Translation: CAH72184.1.
    BC001104 mRNA. Translation: AAH01104.1.
    CCDSiCCDS31949.1. [Q9BVL2-3]
    CCDS9314.1. [Q9BVL2-1]
    RefSeqiNP_001008564.1. NM_001008564.1. [Q9BVL2-3]
    NP_054808.1. NM_014089.3. [Q9BVL2-1]
    UniGeneiHs.507537.
    Hs.718943.
    Hs.732064.

    Genome annotation databases

    EnsembliENST00000381718; ENSP00000371137; ENSG00000139496. [Q9BVL2-3]
    ENST00000381736; ENSP00000371155; ENSG00000139496. [Q9BVL2-1]
    ENST00000463407; ENSP00000418555; ENSG00000139496. [Q9BVL2-2]
    GeneIDi9818.
    KEGGihsa:9818.
    UCSCiuc001uqg.1. human. [Q9BVL2-2]
    uc001uqi.3. human. [Q9BVL2-1]

    Polymorphism databases

    DMDMi44888845.

    Keywords - Coding sequence diversityi

    Alternative splicing, Polymorphism

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AB007870 mRNA. Translation: BAA23706.2 . Different initiation.
    AK302946 mRNA. Translation: BAG64103.1 .
    AL138958 , AL590787 , AL646102 Genomic DNA. Translation: CAH71290.1 .
    AL590787 , AL138958 , AL646102 Genomic DNA. Translation: CAI39898.1 .
    AL590787 Genomic DNA. Translation: CAI39901.1 .
    AL646102 , AL138958 , AL590787 Genomic DNA. Translation: CAH72184.1 .
    BC001104 mRNA. Translation: AAH01104.1 .
    CCDSi CCDS31949.1. [Q9BVL2-3 ]
    CCDS9314.1. [Q9BVL2-1 ]
    RefSeqi NP_001008564.1. NM_001008564.1. [Q9BVL2-3 ]
    NP_054808.1. NM_014089.3. [Q9BVL2-1 ]
    UniGenei Hs.507537.
    Hs.718943.
    Hs.732064.

    3D structure databases

    ProteinModelPortali Q9BVL2.
    SMRi Q9BVL2. Positions 341-426.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    BioGridi 115157. 9 interactions.
    IntActi Q9BVL2. 6 interactions.
    STRINGi 9606.ENSP00000371155.

    PTM databases

    PhosphoSitei Q9BVL2.

    Polymorphism databases

    DMDMi 44888845.

    Proteomic databases

    MaxQBi Q9BVL2.
    PaxDbi Q9BVL2.
    PRIDEi Q9BVL2.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENST00000381718 ; ENSP00000371137 ; ENSG00000139496 . [Q9BVL2-3 ]
    ENST00000381736 ; ENSP00000371155 ; ENSG00000139496 . [Q9BVL2-1 ]
    ENST00000463407 ; ENSP00000418555 ; ENSG00000139496 . [Q9BVL2-2 ]
    GeneIDi 9818.
    KEGGi hsa:9818.
    UCSCi uc001uqg.1. human. [Q9BVL2-2 ]
    uc001uqi.3. human. [Q9BVL2-1 ]

    Organism-specific databases

    CTDi 9818.
    GeneCardsi GC13P025875.
    HGNCi HGNC:20261. NUPL1.
    HPAi HPA039360.
    MIMi 607615. gene.
    neXtProti NX_Q9BVL2.
    PharmGKBi PA134981903.
    HUGEi Search...
    GenAtlasi Search...

    Phylogenomic databases

    eggNOGi NOG148149.
    HOGENOMi HOG000273874.
    HOVERGENi HBG052703.
    InParanoidi Q9BVL2.
    KOi K14307.
    OMAi YRKTFLG.
    OrthoDBi EOG7H1JN7.
    PhylomeDBi Q9BVL2.
    TreeFami TF106502.

    Enzyme and pathway databases

    Reactomei REACT_115831. ISG15 antiviral mechanism.
    REACT_163931. Nuclear Pore Complex (NPC) Disassembly.
    REACT_6190. Rev-mediated nuclear export of HIV RNA.
    REACT_6804. Regulation of Glucokinase by Glucokinase Regulatory Protein.
    REACT_7991. Vpr-mediated nuclear import of PICs.
    REACT_9395. Nuclear import of Rev protein.

    Miscellaneous databases

    ChiTaRSi NUPL1. human.
    GeneWikii NUPL1.
    GenomeRNAii 9818.
    NextBioi 35476494.
    PROi Q9BVL2.
    SOURCEi Search...

    Gene expression databases

    ArrayExpressi Q9BVL2.
    Bgeei Q9BVL2.
    CleanExi HS_NUPL1.
    Genevestigatori Q9BVL2.

    Family and domain databases

    InterProi IPR024882. Nucleoporin_p58/p45.
    [Graphical view ]
    PANTHERi PTHR13437. PTHR13437. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Prediction of the coding sequences of unidentified human genes. VIII. 78 new cDNA clones from brain which code for large proteins in vitro."
      Ishikawa K., Nagase T., Nakajima D., Seki N., Ohira M., Miyajima N., Tanaka A., Kotani H., Nomura N., Ohara O.
      DNA Res. 4:307-313(1997) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
      Tissue: Brain.
    2. "Complete sequencing and characterization of 21,243 full-length human cDNAs."
      Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S.
      , Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.
      Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 3), VARIANT THR-34.
      Tissue: Testis.
    3. "The DNA sequence and analysis of human chromosome 13."
      Dunham A., Matthews L.H., Burton J., Ashurst J.L., Howe K.L., Ashcroft K.J., Beare D.M., Burford D.C., Hunt S.E., Griffiths-Jones S., Jones M.C., Keenan S.J., Oliver K., Scott C.E., Ainscough R., Almeida J.P., Ambrose K.D., Andrews D.T.
      , Ashwell R.I.S., Babbage A.K., Bagguley C.L., Bailey J., Bannerjee R., Barlow K.F., Bates K., Beasley H., Bird C.P., Bray-Allen S., Brown A.J., Brown J.Y., Burrill W., Carder C., Carter N.P., Chapman J.C., Clamp M.E., Clark S.Y., Clarke G., Clee C.M., Clegg S.C., Cobley V., Collins J.E., Corby N., Coville G.J., Deloukas P., Dhami P., Dunham I., Dunn M., Earthrowl M.E., Ellington A.G., Faulkner L., Frankish A.G., Frankland J., French L., Garner P., Garnett J., Gilbert J.G.R., Gilson C.J., Ghori J., Grafham D.V., Gribble S.M., Griffiths C., Hall R.E., Hammond S., Harley J.L., Hart E.A., Heath P.D., Howden P.J., Huckle E.J., Hunt P.J., Hunt A.R., Johnson C., Johnson D., Kay M., Kimberley A.M., King A., Laird G.K., Langford C.J., Lawlor S., Leongamornlert D.A., Lloyd D.M., Lloyd C., Loveland J.E., Lovell J., Martin S., Mashreghi-Mohammadi M., McLaren S.J., McMurray A., Milne S., Moore M.J.F., Nickerson T., Palmer S.A., Pearce A.V., Peck A.I., Pelan S., Phillimore B., Porter K.M., Rice C.M., Searle S., Sehra H.K., Shownkeen R., Skuce C.D., Smith M., Steward C.A., Sycamore N., Tester J., Thomas D.W., Tracey A., Tromans A., Tubby B., Wall M., Wallis J.M., West A.P., Whitehead S.L., Willey D.L., Wilming L., Wray P.W., Wright M.W., Young L., Coulson A., Durbin R.M., Hubbard T., Sulston J.E., Beck S., Bentley D.R., Rogers J., Ross M.T.
      Nature 428:522-528(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    4. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
      The MGC Project Team
      Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
      Tissue: Placenta.
    5. "Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis."
      Olsen J.V., Vermeulen M., Santamaria A., Kumar C., Miller M.L., Jensen L.J., Gnad F., Cox J., Jensen T.S., Nigg E.A., Brunak S., Mann M.
      Sci. Signal. 3:RA3-RA3(2010) [PubMed] [Europe PMC] [Abstract]
      Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT THR-331, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
      Tissue: Cervix carcinoma.
    6. Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].

    Entry informationi

    Entry nameiNUPL1_HUMAN
    AccessioniPrimary (citable) accession number: Q9BVL2
    Secondary accession number(s): A6NI12
    , B4DZJ1, O43160, Q5JRG2, Q5JRG5
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: October 10, 2003
    Last sequence update: June 1, 2001
    Last modified: October 1, 2014
    This is version 116 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programChordata Protein Annotation Program
    DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

    Miscellaneousi

    Miscellaneous

    In rat, the p62 complex contains two different isoforms of NUPL1. Isoform p45 has however not been isolated in human so far.

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Human chromosome 13
      Human chromosome 13: entries, gene names and cross-references to MIM
    2. Human entries with polymorphisms or disease mutations
      List of human entries with polymorphisms or disease mutations
    3. Human polymorphisms and disease mutations
      Index of human polymorphisms and disease mutations
    4. MIM cross-references
      Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot
    5. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3