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Q9BVG4 (PBDC1_HUMAN) Reviewed, UniProtKB/Swiss-Prot

Last modified April 16, 2014. Version 91. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Protein PBDC1
Alternative name(s):
Polysaccharide biosynthesis domain-containing protein 1
Gene names
Name:PBDC1
Synonyms:CXorf26
OrganismHomo sapiens (Human) [Reference proteome]
Taxonomic identifier9606 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo

Protein attributes

Sequence length233 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Sequence similarities

Belongs to the PBDC1 family.

Ontologies

Keywords
   PTMPhosphoprotein
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
None. [Check GOA]

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 233233Protein PBDC1
PRO_0000254105

Amino acid modifications

Modified residue1261Phosphoserine Ref.2
Modified residue1811Phosphoserine Ref.6
Modified residue1971Phosphoserine Ref.4 Ref.6

Sequences

Sequence LengthMass (Da)Tools
Q9BVG4 [UniParc].

Last modified June 1, 2001. Version 1.
Checksum: 31FD39EC70B9A9C7

FASTA23326,057
        10         20         30         40         50         60 
MAATSGTDEP VSGELVSVAH ALSLPAESYG NDPDIEMAWA MRAMQHAEVY YKLISSVDPQ 

        70         80         90        100        110        120 
FLKLTKVDDQ IYSEFRKNFE TLRIDVLDPE ELKSESAKEK WRPFCLKFNG IVEDFNYGTL 

       130        140        150        160        170        180 
LRLDCSQGYT EENTIFAPRI QFFAIEIARN REGYNKAVYI SVQDKEGEKG VNNGGEKRAD 

       190        200        210        220        230 
SGEEENTKNG GEKGADSGEE KEEGINREDK TDKGGEKGKE ADKEINKSGE KAM 

« Hide

References

[1]"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
The MGC Project Team
Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Tissue: Leiomyosarcoma and Rhabdomyosarcoma.
[2]"ATM and ATR substrate analysis reveals extensive protein networks responsive to DNA damage."
Matsuoka S., Ballif B.A., Smogorzewska A., McDonald E.R. III, Hurov K.E., Luo J., Bakalarski C.E., Zhao Z., Solimini N., Lerenthal Y., Shiloh Y., Gygi S.P., Elledge S.J.
Science 316:1160-1166(2007) [PubMed] [Europe PMC] [Abstract]
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-126, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
Tissue: Embryonic kidney.
[3]"A quantitative atlas of mitotic phosphorylation."
Dephoure N., Zhou C., Villen J., Beausoleil S.A., Bakalarski C.E., Elledge S.J., Gygi S.P.
Proc. Natl. Acad. Sci. U.S.A. 105:10762-10767(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
Tissue: Cervix carcinoma.
[4]"Large-scale phosphoproteome analysis of human liver tissue by enrichment and fractionation of phosphopeptides with strong anion exchange chromatography."
Han G., Ye M., Zhou H., Jiang X., Feng S., Jiang X., Tian R., Wan D., Zou H., Gu J.
Proteomics 8:1346-1361(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-197, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
Tissue: Liver.
[5]"Initial characterization of the human central proteome."
Burkard T.R., Planyavsky M., Kaupe I., Breitwieser F.P., Buerckstuemmer T., Bennett K.L., Superti-Furga G., Colinge J.
BMC Syst. Biol. 5:17-17(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
[6]"System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation."
Rigbolt K.T., Prokhorova T.A., Akimov V., Henningsen J., Johansen P.T., Kratchmarova I., Kassem M., Mann M., Olsen J.V., Blagoev B.
Sci. Signal. 4:RS3-RS3(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-181 AND SER-197, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
BC001220 mRNA. Translation: AAH01220.1.
BC051894 mRNA. Translation: AAH51894.1.
RefSeqNP_057584.2. NM_016500.3.
UniGeneHs.370100.

3D structure databases

ProteinModelPortalQ9BVG4.
SMRQ9BVG4. Positions 26-155.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

BioGrid119416. 11 interactions.
IntActQ9BVG4. 6 interactions.
STRING9606.ENSP00000362456.

PTM databases

PhosphoSiteQ9BVG4.

Polymorphism databases

DMDM74733325.

Proteomic databases

PaxDbQ9BVG4.
PeptideAtlasQ9BVG4.
PRIDEQ9BVG4.

Protocols and materials databases

DNASU51260.
StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENST00000373358; ENSP00000362456; ENSG00000102390.
ENST00000601279; ENSP00000469946; ENSG00000269056.
GeneID51260.
KEGGhsa:51260.
UCSCuc004ecl.1. human.

Organism-specific databases

CTD51260.
GeneCardsGC0XP075403.
H-InvDBHIX0016884.
HIX0148004.
HGNCHGNC:28790. PBDC1.
HPAHPA003155.
neXtProtNX_Q9BVG4.
PharmGKBPA128394657.
GenAtlasSearch...

Phylogenomic databases

eggNOGNOG285457.
HOGENOMHOG000189636.
HOVERGENHBG059712.
InParanoidQ9BVG4.
OMALRLNCSQ.
PhylomeDBQ9BVG4.
TreeFamTF314442.

Gene expression databases

ArrayExpressQ9BVG4.
BgeeQ9BVG4.
CleanExHS_CXorf26.
GenevestigatorQ9BVG4.

Family and domain databases

Gene3D1.10.3560.10. 1 hit.
InterProIPR021148. Put_polysacc_synth.
IPR008476. UPF0368_met/fun.
IPR023139. Yst0336-like_domain.
[Graphical view]
PANTHERPTHR13410. PTHR13410. 1 hit.
PfamPF04669. Polysacc_synt_4. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

ChiTaRSCXorf26. human.
GenomeRNAi51260.
NextBio54431.

Entry information

Entry namePBDC1_HUMAN
AccessionPrimary (citable) accession number: Q9BVG4
Entry history
Integrated into UniProtKB/Swiss-Prot: October 31, 2006
Last sequence update: June 1, 2001
Last modified: April 16, 2014
This is version 91 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Relevant documents

SIMILARITY comments

Index of protein domains and families

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Human chromosome X: entries, gene names and cross-references to MIM