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Q9BVG4

- PBDC1_HUMAN

UniProt

Q9BVG4 - PBDC1_HUMAN

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Protein
Protein PBDC1
Gene
PBDC1, CXorf26
Organism
Homo sapiens (Human)
Status
Reviewed - Annotation score: 2 out of 5 - Experimental evidence at protein leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Protein PBDC1
Alternative name(s):
Polysaccharide biosynthesis domain-containing protein 1
Gene namesi
Name:PBDC1
Synonyms:CXorf26
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
ProteomesiUP000005640: Chromosome X

Organism-specific databases

HGNCiHGNC:28790. PBDC1.

Pathology & Biotechi

Organism-specific databases

PharmGKBiPA128394657.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 233233Protein PBDC1
PRO_0000254105Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei126 – 1261Phosphoserine1 Publication
Modified residuei181 – 1811Phosphoserine1 Publication
Modified residuei197 – 1971Phosphoserine2 Publications

Keywords - PTMi

Phosphoprotein

Proteomic databases

MaxQBiQ9BVG4.
PaxDbiQ9BVG4.
PeptideAtlasiQ9BVG4.
PRIDEiQ9BVG4.

PTM databases

PhosphoSiteiQ9BVG4.

Expressioni

Gene expression databases

ArrayExpressiQ9BVG4.
BgeeiQ9BVG4.
CleanExiHS_CXorf26.
GenevestigatoriQ9BVG4.

Organism-specific databases

HPAiHPA003155.

Interactioni

Protein-protein interaction databases

BioGridi119416. 11 interactions.
IntActiQ9BVG4. 6 interactions.
STRINGi9606.ENSP00000362456.

Structurei

3D structure databases

ProteinModelPortaliQ9BVG4.
SMRiQ9BVG4. Positions 26-155.

Family & Domainsi

Sequence similaritiesi

Belongs to the PBDC1 family.

Phylogenomic databases

eggNOGiNOG285457.
HOGENOMiHOG000189636.
HOVERGENiHBG059712.
InParanoidiQ9BVG4.
OMAiLRLNCSQ.
PhylomeDBiQ9BVG4.
TreeFamiTF314442.

Family and domain databases

Gene3Di1.10.3560.10. 1 hit.
InterProiIPR021148. Put_polysacc_synth.
IPR008476. UPF0368_met/fun.
IPR023139. Yst0336-like_domain.
[Graphical view]
PANTHERiPTHR13410. PTHR13410. 1 hit.
PfamiPF04669. Polysacc_synt_4. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9BVG4-1 [UniParc]FASTAAdd to Basket

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MAATSGTDEP VSGELVSVAH ALSLPAESYG NDPDIEMAWA MRAMQHAEVY    50
YKLISSVDPQ FLKLTKVDDQ IYSEFRKNFE TLRIDVLDPE ELKSESAKEK 100
WRPFCLKFNG IVEDFNYGTL LRLDCSQGYT EENTIFAPRI QFFAIEIARN 150
REGYNKAVYI SVQDKEGEKG VNNGGEKRAD SGEEENTKNG GEKGADSGEE 200
KEEGINREDK TDKGGEKGKE ADKEINKSGE KAM 233
Length:233
Mass (Da):26,057
Last modified:June 1, 2001 - v1
Checksum:i31FD39EC70B9A9C7
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
BC001220 mRNA. Translation: AAH01220.1.
BC051894 mRNA. Translation: AAH51894.1.
CCDSiCCDS14432.1.
RefSeqiNP_057584.2. NM_016500.3.
UniGeneiHs.370100.

Genome annotation databases

EnsembliENST00000373358; ENSP00000362456; ENSG00000102390.
ENST00000601279; ENSP00000469946; ENSG00000269056.
GeneIDi51260.
KEGGihsa:51260.
UCSCiuc004ecl.1. human.

Polymorphism databases

DMDMi74733325.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
BC001220 mRNA. Translation: AAH01220.1 .
BC051894 mRNA. Translation: AAH51894.1 .
CCDSi CCDS14432.1.
RefSeqi NP_057584.2. NM_016500.3.
UniGenei Hs.370100.

3D structure databases

ProteinModelPortali Q9BVG4.
SMRi Q9BVG4. Positions 26-155.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

BioGridi 119416. 11 interactions.
IntActi Q9BVG4. 6 interactions.
STRINGi 9606.ENSP00000362456.

PTM databases

PhosphoSitei Q9BVG4.

Polymorphism databases

DMDMi 74733325.

Proteomic databases

MaxQBi Q9BVG4.
PaxDbi Q9BVG4.
PeptideAtlasi Q9BVG4.
PRIDEi Q9BVG4.

Protocols and materials databases

DNASUi 51260.
Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENST00000373358 ; ENSP00000362456 ; ENSG00000102390 .
ENST00000601279 ; ENSP00000469946 ; ENSG00000269056 .
GeneIDi 51260.
KEGGi hsa:51260.
UCSCi uc004ecl.1. human.

Organism-specific databases

CTDi 51260.
GeneCardsi GC0XP075403.
H-InvDB HIX0016884.
HIX0148004.
HGNCi HGNC:28790. PBDC1.
HPAi HPA003155.
neXtProti NX_Q9BVG4.
PharmGKBi PA128394657.
GenAtlasi Search...

Phylogenomic databases

eggNOGi NOG285457.
HOGENOMi HOG000189636.
HOVERGENi HBG059712.
InParanoidi Q9BVG4.
OMAi LRLNCSQ.
PhylomeDBi Q9BVG4.
TreeFami TF314442.

Miscellaneous databases

ChiTaRSi CXorf26. human.
GenomeRNAii 51260.
NextBioi 54431.

Gene expression databases

ArrayExpressi Q9BVG4.
Bgeei Q9BVG4.
CleanExi HS_CXorf26.
Genevestigatori Q9BVG4.

Family and domain databases

Gene3Di 1.10.3560.10. 1 hit.
InterProi IPR021148. Put_polysacc_synth.
IPR008476. UPF0368_met/fun.
IPR023139. Yst0336-like_domain.
[Graphical view ]
PANTHERi PTHR13410. PTHR13410. 1 hit.
Pfami PF04669. Polysacc_synt_4. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Leiomyosarcoma and Rhabdomyosarcoma.
  2. Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-126, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
    Tissue: Embryonic kidney.
  3. Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
    Tissue: Cervix carcinoma.
  4. "Large-scale phosphoproteome analysis of human liver tissue by enrichment and fractionation of phosphopeptides with strong anion exchange chromatography."
    Han G., Ye M., Zhou H., Jiang X., Feng S., Jiang X., Tian R., Wan D., Zou H., Gu J.
    Proteomics 8:1346-1361(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-197, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
    Tissue: Liver.
  5. Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
  6. "System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation."
    Rigbolt K.T., Prokhorova T.A., Akimov V., Henningsen J., Johansen P.T., Kratchmarova I., Kassem M., Mann M., Olsen J.V., Blagoev B.
    Sci. Signal. 4:RS3-RS3(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-181 AND SER-197, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].

Entry informationi

Entry nameiPBDC1_HUMAN
AccessioniPrimary (citable) accession number: Q9BVG4
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 31, 2006
Last sequence update: June 1, 2001
Last modified: July 9, 2014
This is version 93 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome X
    Human chromosome X: entries, gene names and cross-references to MIM
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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