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Q9BV19

- CA050_HUMAN

UniProt

Q9BV19 - CA050_HUMAN

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Protein

Uncharacterized protein C1orf50

Gene

C1orf50

Organism
Homo sapiens (Human)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein C1orf50
Gene namesi
Name:C1orf50
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
ProteomesiUP000005640: Chromosome 1

Organism-specific databases

HGNCiHGNC:28795. C1orf50.

Pathology & Biotechi

Organism-specific databases

PharmGKBiPA134861089.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 199199Uncharacterized protein C1orf50PRO_0000251189Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei1 – 11N-acetylmethionine1 Publication

Keywords - PTMi

Acetylation

Proteomic databases

MaxQBiQ9BV19.
PaxDbiQ9BV19.
PRIDEiQ9BV19.

PTM databases

PhosphoSiteiQ9BV19.

Expressioni

Gene expression databases

BgeeiQ9BV19.
CleanExiHS_C1orf50.
ExpressionAtlasiQ9BV19. baseline and differential.
GenevestigatoriQ9BV19.

Organism-specific databases

HPAiHPA030236.

Interactioni

Protein-protein interaction databases

BioGridi122528. 3 interactions.
IntActiQ9BV19. 1 interaction.

Structurei

3D structure databases

ProteinModelPortaliQ9BV19.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Coiled coil

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Coiled coili71 – 10131Sequence AnalysisAdd
BLAST

Keywords - Domaini

Coiled coil

Phylogenomic databases

eggNOGiNOG84695.
GeneTreeiENSGT00390000003084.
HOGENOMiHOG000230218.
HOVERGENiHBG080112.
InParanoidiQ9BV19.
OMAiRANATNK.
PhylomeDBiQ9BV19.
TreeFamiTF105992.

Family and domain databases

InterProiIPR019534. DUF2452.
[Graphical view]
PfamiPF10504. DUF2452. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9BV19-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MEDAAAPGRT EGVLERQGAP PAAGQGGALV ELTPTPGGLA LVSPYHTHRA
60 70 80 90 100
GDPLDLVALA EQVQKADEFI RANATNKLTV IAEQIQHLQE QARKVLEDAH
110 120 130 140 150
RDANLHHVAC NIVKKPGNIY YLYKRESGQQ YFSIISPKEW GTSCPHDFLG
160 170 180 190
AYKLQHDLSW TPYEDIEKQD AKISMMDTLL SQSVALPPCT EPNFQGLTH
Length:199
Mass (Da):21,877
Last modified:February 10, 2009 - v2
Checksum:i499A0179C042E39D
GO

Natural variant

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Natural varianti178 – 1781T → M.1 Publication
Corresponds to variant rs11548275 [ dbSNP | Ensembl ].
VAR_054409

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AC098484 Genomic DNA. No translation available.
BC001508 mRNA. Translation: AAH01508.1.
BC001711 mRNA. Translation: AAH01711.1.
CCDSiCCDS473.1.
RefSeqiNP_077002.2. NM_024097.3.
UniGeneiHs.148845.

Genome annotation databases

EnsembliENST00000372525; ENSP00000361603; ENSG00000164008.
GeneIDi79078.
KEGGihsa:79078.
UCSCiuc001cia.4. human.

Polymorphism databases

DMDMi223590163.

Keywords - Coding sequence diversityi

Polymorphism

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AC098484 Genomic DNA. No translation available.
BC001508 mRNA. Translation: AAH01508.1 .
BC001711 mRNA. Translation: AAH01711.1 .
CCDSi CCDS473.1.
RefSeqi NP_077002.2. NM_024097.3.
UniGenei Hs.148845.

3D structure databases

ProteinModelPortali Q9BV19.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

BioGridi 122528. 3 interactions.
IntActi Q9BV19. 1 interaction.

PTM databases

PhosphoSitei Q9BV19.

Polymorphism databases

DMDMi 223590163.

Proteomic databases

MaxQBi Q9BV19.
PaxDbi Q9BV19.
PRIDEi Q9BV19.

Protocols and materials databases

DNASUi 79078.
Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENST00000372525 ; ENSP00000361603 ; ENSG00000164008 .
GeneIDi 79078.
KEGGi hsa:79078.
UCSCi uc001cia.4. human.

Organism-specific databases

CTDi 79078.
GeneCardsi GC01P043232.
HGNCi HGNC:28795. C1orf50.
HPAi HPA030236.
neXtProti NX_Q9BV19.
PharmGKBi PA134861089.
GenAtlasi Search...

Phylogenomic databases

eggNOGi NOG84695.
GeneTreei ENSGT00390000003084.
HOGENOMi HOG000230218.
HOVERGENi HBG080112.
InParanoidi Q9BV19.
OMAi RANATNK.
PhylomeDBi Q9BV19.
TreeFami TF105992.

Miscellaneous databases

ChiTaRSi C1orf50. human.
GenomeRNAii 79078.
NextBioi 67879.

Gene expression databases

Bgeei Q9BV19.
CleanExi HS_C1orf50.
ExpressionAtlasi Q9BV19. baseline and differential.
Genevestigatori Q9BV19.

Family and domain databases

InterProi IPR019534. DUF2452.
[Graphical view ]
Pfami PF10504. DUF2452. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "The DNA sequence and biological annotation of human chromosome 1."
    Gregory S.G., Barlow K.F., McLay K.E., Kaul R., Swarbreck D., Dunham A., Scott C.E., Howe K.L., Woodfine K., Spencer C.C.A., Jones M.C., Gillson C., Searle S., Zhou Y., Kokocinski F., McDonald L., Evans R., Phillips K.
    , Atkinson A., Cooper R., Jones C., Hall R.E., Andrews T.D., Lloyd C., Ainscough R., Almeida J.P., Ambrose K.D., Anderson F., Andrew R.W., Ashwell R.I.S., Aubin K., Babbage A.K., Bagguley C.L., Bailey J., Beasley H., Bethel G., Bird C.P., Bray-Allen S., Brown J.Y., Brown A.J., Buckley D., Burton J., Bye J., Carder C., Chapman J.C., Clark S.Y., Clarke G., Clee C., Cobley V., Collier R.E., Corby N., Coville G.J., Davies J., Deadman R., Dunn M., Earthrowl M., Ellington A.G., Errington H., Frankish A., Frankland J., French L., Garner P., Garnett J., Gay L., Ghori M.R.J., Gibson R., Gilby L.M., Gillett W., Glithero R.J., Grafham D.V., Griffiths C., Griffiths-Jones S., Grocock R., Hammond S., Harrison E.S.I., Hart E., Haugen E., Heath P.D., Holmes S., Holt K., Howden P.J., Hunt A.R., Hunt S.E., Hunter G., Isherwood J., James R., Johnson C., Johnson D., Joy A., Kay M., Kershaw J.K., Kibukawa M., Kimberley A.M., King A., Knights A.J., Lad H., Laird G., Lawlor S., Leongamornlert D.A., Lloyd D.M., Loveland J., Lovell J., Lush M.J., Lyne R., Martin S., Mashreghi-Mohammadi M., Matthews L., Matthews N.S.W., McLaren S., Milne S., Mistry S., Moore M.J.F., Nickerson T., O'Dell C.N., Oliver K., Palmeiri A., Palmer S.A., Parker A., Patel D., Pearce A.V., Peck A.I., Pelan S., Phelps K., Phillimore B.J., Plumb R., Rajan J., Raymond C., Rouse G., Saenphimmachak C., Sehra H.K., Sheridan E., Shownkeen R., Sims S., Skuce C.D., Smith M., Steward C., Subramanian S., Sycamore N., Tracey A., Tromans A., Van Helmond Z., Wall M., Wallis J.M., White S., Whitehead S.L., Wilkinson J.E., Willey D.L., Williams H., Wilming L., Wray P.W., Wu Z., Coulson A., Vaudin M., Sulston J.E., Durbin R.M., Hubbard T., Wooster R., Dunham I., Carter N.P., McVean G., Ross M.T., Harrow J., Olson M.V., Beck S., Rogers J., Bentley D.R.
    Nature 441:315-321(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  2. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA], VARIANT MET-178.
    Tissue: Lymph.
  3. Cited for: ACETYLATION [LARGE SCALE ANALYSIS] AT MET-1, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].

Entry informationi

Entry nameiCA050_HUMAN
AccessioniPrimary (citable) accession number: Q9BV19
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 3, 2006
Last sequence update: February 10, 2009
Last modified: October 29, 2014
This is version 85 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 1
    Human chromosome 1: entries, gene names and cross-references to MIM
  2. Human entries with polymorphisms or disease mutations
    List of human entries with polymorphisms or disease mutations
  3. Human polymorphisms and disease mutations
    Index of human polymorphisms and disease mutations

External Data

Dasty 3