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Q9BV19

- CA050_HUMAN

UniProt

Q9BV19 - CA050_HUMAN

Protein

Uncharacterized protein C1orf50

Gene

C1orf50

Organism
Homo sapiens (Human)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 84 (01 Oct 2014)
      Sequence version 2 (10 Feb 2009)
      Previous versions | rss
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    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Uncharacterized protein C1orf50
    Gene namesi
    Name:C1orf50
    OrganismiHomo sapiens (Human)
    Taxonomic identifieri9606 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
    ProteomesiUP000005640: Chromosome 1

    Organism-specific databases

    HGNCiHGNC:28795. C1orf50.

    Pathology & Biotechi

    Organism-specific databases

    PharmGKBiPA134861089.

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 199199Uncharacterized protein C1orf50PRO_0000251189Add
    BLAST

    Amino acid modifications

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Modified residuei1 – 11N-acetylmethionine1 Publication

    Keywords - PTMi

    Acetylation

    Proteomic databases

    MaxQBiQ9BV19.
    PaxDbiQ9BV19.
    PRIDEiQ9BV19.

    PTM databases

    PhosphoSiteiQ9BV19.

    Expressioni

    Gene expression databases

    ArrayExpressiQ9BV19.
    BgeeiQ9BV19.
    CleanExiHS_C1orf50.
    GenevestigatoriQ9BV19.

    Organism-specific databases

    HPAiHPA030236.

    Interactioni

    Protein-protein interaction databases

    BioGridi122528. 2 interactions.
    IntActiQ9BV19. 1 interaction.

    Structurei

    3D structure databases

    ProteinModelPortaliQ9BV19.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Coiled coil

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Coiled coili71 – 10131Sequence AnalysisAdd
    BLAST

    Keywords - Domaini

    Coiled coil

    Phylogenomic databases

    eggNOGiNOG84695.
    HOGENOMiHOG000230218.
    HOVERGENiHBG080112.
    InParanoidiQ9BV19.
    OMAiRANATNK.
    PhylomeDBiQ9BV19.
    TreeFamiTF105992.

    Family and domain databases

    InterProiIPR019534. DUF2452.
    [Graphical view]
    PfamiPF10504. DUF2452. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q9BV19-1 [UniParc]FASTAAdd to Basket

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    MEDAAAPGRT EGVLERQGAP PAAGQGGALV ELTPTPGGLA LVSPYHTHRA    50
    GDPLDLVALA EQVQKADEFI RANATNKLTV IAEQIQHLQE QARKVLEDAH 100
    RDANLHHVAC NIVKKPGNIY YLYKRESGQQ YFSIISPKEW GTSCPHDFLG 150
    AYKLQHDLSW TPYEDIEKQD AKISMMDTLL SQSVALPPCT EPNFQGLTH 199
    Length:199
    Mass (Da):21,877
    Last modified:February 10, 2009 - v2
    Checksum:i499A0179C042E39D
    GO

    Natural variant

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Natural varianti178 – 1781T → M.1 Publication
    Corresponds to variant rs11548275 [ dbSNP | Ensembl ].
    VAR_054409

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AC098484 Genomic DNA. No translation available.
    BC001508 mRNA. Translation: AAH01508.1.
    BC001711 mRNA. Translation: AAH01711.1.
    CCDSiCCDS473.1.
    RefSeqiNP_077002.2. NM_024097.3.
    UniGeneiHs.148845.

    Genome annotation databases

    EnsembliENST00000372525; ENSP00000361603; ENSG00000164008.
    GeneIDi79078.
    KEGGihsa:79078.
    UCSCiuc001cia.4. human.

    Polymorphism databases

    DMDMi223590163.

    Keywords - Coding sequence diversityi

    Polymorphism

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AC098484 Genomic DNA. No translation available.
    BC001508 mRNA. Translation: AAH01508.1 .
    BC001711 mRNA. Translation: AAH01711.1 .
    CCDSi CCDS473.1.
    RefSeqi NP_077002.2. NM_024097.3.
    UniGenei Hs.148845.

    3D structure databases

    ProteinModelPortali Q9BV19.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    BioGridi 122528. 2 interactions.
    IntActi Q9BV19. 1 interaction.

    PTM databases

    PhosphoSitei Q9BV19.

    Polymorphism databases

    DMDMi 223590163.

    Proteomic databases

    MaxQBi Q9BV19.
    PaxDbi Q9BV19.
    PRIDEi Q9BV19.

    Protocols and materials databases

    DNASUi 79078.
    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENST00000372525 ; ENSP00000361603 ; ENSG00000164008 .
    GeneIDi 79078.
    KEGGi hsa:79078.
    UCSCi uc001cia.4. human.

    Organism-specific databases

    CTDi 79078.
    GeneCardsi GC01P043232.
    HGNCi HGNC:28795. C1orf50.
    HPAi HPA030236.
    neXtProti NX_Q9BV19.
    PharmGKBi PA134861089.
    GenAtlasi Search...

    Phylogenomic databases

    eggNOGi NOG84695.
    HOGENOMi HOG000230218.
    HOVERGENi HBG080112.
    InParanoidi Q9BV19.
    OMAi RANATNK.
    PhylomeDBi Q9BV19.
    TreeFami TF105992.

    Miscellaneous databases

    ChiTaRSi C1orf50. human.
    GenomeRNAii 79078.
    NextBioi 67879.

    Gene expression databases

    ArrayExpressi Q9BV19.
    Bgeei Q9BV19.
    CleanExi HS_C1orf50.
    Genevestigatori Q9BV19.

    Family and domain databases

    InterProi IPR019534. DUF2452.
    [Graphical view ]
    Pfami PF10504. DUF2452. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The DNA sequence and biological annotation of human chromosome 1."
      Gregory S.G., Barlow K.F., McLay K.E., Kaul R., Swarbreck D., Dunham A., Scott C.E., Howe K.L., Woodfine K., Spencer C.C.A., Jones M.C., Gillson C., Searle S., Zhou Y., Kokocinski F., McDonald L., Evans R., Phillips K.
      , Atkinson A., Cooper R., Jones C., Hall R.E., Andrews T.D., Lloyd C., Ainscough R., Almeida J.P., Ambrose K.D., Anderson F., Andrew R.W., Ashwell R.I.S., Aubin K., Babbage A.K., Bagguley C.L., Bailey J., Beasley H., Bethel G., Bird C.P., Bray-Allen S., Brown J.Y., Brown A.J., Buckley D., Burton J., Bye J., Carder C., Chapman J.C., Clark S.Y., Clarke G., Clee C., Cobley V., Collier R.E., Corby N., Coville G.J., Davies J., Deadman R., Dunn M., Earthrowl M., Ellington A.G., Errington H., Frankish A., Frankland J., French L., Garner P., Garnett J., Gay L., Ghori M.R.J., Gibson R., Gilby L.M., Gillett W., Glithero R.J., Grafham D.V., Griffiths C., Griffiths-Jones S., Grocock R., Hammond S., Harrison E.S.I., Hart E., Haugen E., Heath P.D., Holmes S., Holt K., Howden P.J., Hunt A.R., Hunt S.E., Hunter G., Isherwood J., James R., Johnson C., Johnson D., Joy A., Kay M., Kershaw J.K., Kibukawa M., Kimberley A.M., King A., Knights A.J., Lad H., Laird G., Lawlor S., Leongamornlert D.A., Lloyd D.M., Loveland J., Lovell J., Lush M.J., Lyne R., Martin S., Mashreghi-Mohammadi M., Matthews L., Matthews N.S.W., McLaren S., Milne S., Mistry S., Moore M.J.F., Nickerson T., O'Dell C.N., Oliver K., Palmeiri A., Palmer S.A., Parker A., Patel D., Pearce A.V., Peck A.I., Pelan S., Phelps K., Phillimore B.J., Plumb R., Rajan J., Raymond C., Rouse G., Saenphimmachak C., Sehra H.K., Sheridan E., Shownkeen R., Sims S., Skuce C.D., Smith M., Steward C., Subramanian S., Sycamore N., Tracey A., Tromans A., Van Helmond Z., Wall M., Wallis J.M., White S., Whitehead S.L., Wilkinson J.E., Willey D.L., Williams H., Wilming L., Wray P.W., Wu Z., Coulson A., Vaudin M., Sulston J.E., Durbin R.M., Hubbard T., Wooster R., Dunham I., Carter N.P., McVean G., Ross M.T., Harrow J., Olson M.V., Beck S., Rogers J., Bentley D.R.
      Nature 441:315-321(2006) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    2. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
      The MGC Project Team
      Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA], VARIANT MET-178.
      Tissue: Lymph.
    3. Cited for: ACETYLATION [LARGE SCALE ANALYSIS] AT MET-1, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].

    Entry informationi

    Entry nameiCA050_HUMAN
    AccessioniPrimary (citable) accession number: Q9BV19
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: October 3, 2006
    Last sequence update: February 10, 2009
    Last modified: October 1, 2014
    This is version 84 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programChordata Protein Annotation Program
    DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Human chromosome 1
      Human chromosome 1: entries, gene names and cross-references to MIM
    2. Human entries with polymorphisms or disease mutations
      List of human entries with polymorphisms or disease mutations
    3. Human polymorphisms and disease mutations
      Index of human polymorphisms and disease mutations

    External Data

    Dasty 3