Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

TM2 domain-containing protein 3

Gene

TM2D3

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Recommended name:
TM2 domain-containing protein 3
Alternative name(s):
Beta-amyloid-binding protein-like protein 2
Short name:
BBP-like protein 2
Gene namesi
Name:TM2D3
Synonyms:BLP2
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
ProteomesiUP000005640 Componenti: Chromosome 15

Organism-specific databases

HGNCiHGNC:24128. TM2D3.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei180 – 20021HelicalSequence AnalysisAdd
BLAST
Transmembranei216 – 23621HelicalSequence AnalysisAdd
BLAST

GO - Cellular componenti

  1. integral component of membrane Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Membrane

Pathology & Biotechi

Organism-specific databases

PharmGKBiPA142670800.

Polymorphism and mutation databases

BioMutaiTM2D3.
DMDMi308153510.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2929Sequence AnalysisAdd
BLAST
Chaini30 – 247218TM2 domain-containing protein 3PRO_0000298989Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Glycosylationi140 – 1401N-linked (GlcNAc...)Sequence Analysis

Keywords - PTMi

Glycoprotein

Proteomic databases

MaxQBiQ9BRN9.
PaxDbiQ9BRN9.
PRIDEiQ9BRN9.

PTM databases

PhosphoSiteiQ9BRN9.

Expressioni

Tissue specificityi

Widely expressed.1 Publication

Gene expression databases

BgeeiQ9BRN9.
CleanExiHS_TM2D3.
ExpressionAtlasiQ9BRN9. baseline and differential.
GenevestigatoriQ9BRN9.

Organism-specific databases

HPAiHPA054064.

Interactioni

Protein-protein interaction databases

BioGridi123181. 19 interactions.
STRINGi9606.ENSP00000330433.

Structurei

3D structure databases

ProteinModelPortaliQ9BRN9.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the TM2 family.Curated

Keywords - Domaini

Signal, Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiNOG269024.
GeneTreeiENSGT00730000110935.
HOGENOMiHOG000017272.
HOVERGENiHBG061208.
InParanoidiQ9BRN9.
OMAiCPSGGLC.
PhylomeDBiQ9BRN9.
TreeFamiTF314896.

Family and domain databases

InterProiIPR007829. TM2.
[Graphical view]
PfamiPF05154. TM2. 1 hit.
[Graphical view]

Sequences (2)i

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

This entry describes 2 isoformsi produced by alternative splicing. AlignAdd to basket

Isoform 1 (identifier: Q9BRN9-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MAGGVLPLRG LRALCRVLLF LSQFCILSGG EQSQALAQSI KDPGPTRTFT
60 70 80 90 100
VVPRAAESTE IPPYVMKCPS NGLCSRLPAD CIDCTTNFSC TYGKPVTFDC
110 120 130 140 150
AVKPSVTCVD QDFKSQKNFI INMTCRFCWQ LPETDYECTN STSCMTVSCP
160 170 180 190 200
RQRYPANCTV RDHVHCLGNR TFPKMLYCNW TGGYKWSTAL ALSITLGGFG
210 220 230 240
ADRFYLGQWR EGLGKLFSFG GLGIWTLIDV LLIGVGYVGP ADGSLYI
Length:247
Mass (Da):27,118
Last modified:October 5, 2010 - v2
Checksum:i9E18F6F1E50E41E7
GO
Isoform 2 (identifier: Q9BRN9-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     31-56: Missing.

Show »
Length:221
Mass (Da):24,367
Checksum:i6E0623AF1A28FC9D
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti6 – 61L → R in AAK35066 (PubMed:11278849).Curated
Sequence conflicti6 – 61L → R in BAB15415 (PubMed:14702039).Curated
Sequence conflicti6 – 61L → R in BAG37956 (PubMed:14702039).Curated
Sequence conflicti6 – 61L → R in EAX02315 (Ref. 4) Curated
Sequence conflicti6 – 61L → R in AAH06150 (PubMed:15489334).Curated
Sequence conflicti6 – 61L → R in AAH08873 (PubMed:15489334).Curated

Alternative sequence

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Alternative sequencei31 – 5626Missing in isoform 2. 3 PublicationsVSP_027496Add
BLAST

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF353992 mRNA. Translation: AAK35066.1.
AK026257 mRNA. Translation: BAB15415.1.
AK315584 mRNA. Translation: BAG37956.1.
AC090164 Genomic DNA. No translation available.
CH471101 Genomic DNA. Translation: EAX02315.1.
BC006150 mRNA. Translation: AAH06150.1.
BC008873 mRNA. Translation: AAH08873.1.
AL512689 mRNA. Translation: CAC21647.1.
CCDSiCCDS10392.1. [Q9BRN9-2]
CCDS10393.1. [Q9BRN9-1]
RefSeqiNP_079417.2. NM_025141.3. [Q9BRN9-2]
NP_510883.2. NM_078474.2. [Q9BRN9-1]
UniGeneiHs.288912.

Genome annotation databases

EnsembliENST00000333202; ENSP00000330433; ENSG00000184277. [Q9BRN9-1]
ENST00000347970; ENSP00000327584; ENSG00000184277. [Q9BRN9-2]
GeneIDi80213.
KEGGihsa:80213.
UCSCiuc002bxh.3. human. [Q9BRN9-1]
uc002bxj.3. human. [Q9BRN9-2]

Polymorphism and mutation databases

BioMutaiTM2D3.

Keywords - Coding sequence diversityi

Alternative splicing

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF353992 mRNA. Translation: AAK35066.1.
AK026257 mRNA. Translation: BAB15415.1.
AK315584 mRNA. Translation: BAG37956.1.
AC090164 Genomic DNA. No translation available.
CH471101 Genomic DNA. Translation: EAX02315.1.
BC006150 mRNA. Translation: AAH06150.1.
BC008873 mRNA. Translation: AAH08873.1.
AL512689 mRNA. Translation: CAC21647.1.
CCDSiCCDS10392.1. [Q9BRN9-2]
CCDS10393.1. [Q9BRN9-1]
RefSeqiNP_079417.2. NM_025141.3. [Q9BRN9-2]
NP_510883.2. NM_078474.2. [Q9BRN9-1]
UniGeneiHs.288912.

3D structure databases

ProteinModelPortaliQ9BRN9.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi123181. 19 interactions.
STRINGi9606.ENSP00000330433.

PTM databases

PhosphoSiteiQ9BRN9.

Polymorphism and mutation databases

BioMutaiTM2D3.
DMDMi308153510.

Proteomic databases

MaxQBiQ9BRN9.
PaxDbiQ9BRN9.
PRIDEiQ9BRN9.

Protocols and materials databases

DNASUi80213.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000333202; ENSP00000330433; ENSG00000184277. [Q9BRN9-1]
ENST00000347970; ENSP00000327584; ENSG00000184277. [Q9BRN9-2]
GeneIDi80213.
KEGGihsa:80213.
UCSCiuc002bxh.3. human. [Q9BRN9-1]
uc002bxj.3. human. [Q9BRN9-2]

Organism-specific databases

CTDi80213.
GeneCardsiGC15M102173.
HGNCiHGNC:24128. TM2D3.
HPAiHPA054064.
MIMi610014. gene.
neXtProtiNX_Q9BRN9.
PharmGKBiPA142670800.
GenAtlasiSearch...

Phylogenomic databases

eggNOGiNOG269024.
GeneTreeiENSGT00730000110935.
HOGENOMiHOG000017272.
HOVERGENiHBG061208.
InParanoidiQ9BRN9.
OMAiCPSGGLC.
PhylomeDBiQ9BRN9.
TreeFamiTF314896.

Miscellaneous databases

GenomeRNAii80213.
NextBioi70608.
PROiQ9BRN9.
SOURCEiSearch...

Gene expression databases

BgeeiQ9BRN9.
CleanExiHS_TM2D3.
ExpressionAtlasiQ9BRN9. baseline and differential.
GenevestigatoriQ9BRN9.

Family and domain databases

InterProiIPR007829. TM2.
[Graphical view]
PfamiPF05154. TM2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 2), TISSUE SPECIFICITY.
  2. "Complete sequencing and characterization of 21,243 full-length human cDNAs."
    Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S.
    , Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.
    Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 2).
    Tissue: Placenta and Small intestine.
  3. "Analysis of the DNA sequence and duplication history of human chromosome 15."
    Zody M.C., Garber M., Sharpe T., Young S.K., Rowen L., O'Neill K., Whittaker C.A., Kamal M., Chang J.L., Cuomo C.A., Dewar K., FitzGerald M.G., Kodira C.D., Madan A., Qin S., Yang X., Abbasi N., Abouelleil A.
    , Arachchi H.M., Baradarani L., Birditt B., Bloom S., Bloom T., Borowsky M.L., Burke J., Butler J., Cook A., DeArellano K., DeCaprio D., Dorris L. III, Dors M., Eichler E.E., Engels R., Fahey J., Fleetwood P., Friedman C., Gearin G., Hall J.L., Hensley G., Johnson E., Jones C., Kamat A., Kaur A., Locke D.P., Madan A., Munson G., Jaffe D.B., Lui A., Macdonald P., Mauceli E., Naylor J.W., Nesbitt R., Nicol R., O'Leary S.B., Ratcliffe A., Rounsley S., She X., Sneddon K.M.B., Stewart S., Sougnez C., Stone S.M., Topham K., Vincent D., Wang S., Zimmer A.R., Birren B.W., Hood L., Lander E.S., Nusbaum C.
    Nature 440:671-675(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  4. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  5. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 2).
    Tissue: Colon and Muscle.
  6. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 168-247.
    Tissue: Lymph node.

Entry informationi

Entry nameiTM2D3_HUMAN
AccessioniPrimary (citable) accession number: Q9BRN9
Secondary accession number(s): B2RDK9, Q9H046, Q9H651
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 21, 2007
Last sequence update: October 5, 2010
Last modified: April 29, 2015
This is version 84 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 15
    Human chromosome 15: entries, gene names and cross-references to MIM
  2. MIM cross-references
    Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.