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Q9BR11

- ZSWM1_HUMAN

UniProt

Q9BR11 - ZSWM1_HUMAN

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Protein

Zinc finger SWIM domain-containing protein 1

Gene

ZSWIM1

Organism
Homo sapiens (Human)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at transcript leveli

Functioni

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri363 – 40543SWIM-typePROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

  1. zinc ion binding Source: InterPro
Complete GO annotation...

Keywords - Ligandi

Metal-binding, Zinc

Enzyme and pathway databases

SignaLinkiQ9BR11.

Names & Taxonomyi

Protein namesi
Recommended name:
Zinc finger SWIM domain-containing protein 1
Gene namesi
Name:ZSWIM1
Synonyms:C20orf162
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
ProteomesiUP000005640: Chromosome 20

Organism-specific databases

HGNCiHGNC:16155. ZSWIM1.

Subcellular locationi

GO - Cellular componenti

  1. nucleus Source: Ensembl
Complete GO annotation...

Pathology & Biotechi

Organism-specific databases

PharmGKBiPA25704.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 485485Zinc finger SWIM domain-containing protein 1PRO_0000223095Add
BLAST

Proteomic databases

MaxQBiQ9BR11.
PaxDbiQ9BR11.
PRIDEiQ9BR11.

PTM databases

PhosphoSiteiQ9BR11.

Expressioni

Gene expression databases

BgeeiQ9BR11.
CleanExiHS_ZSWIM1.
ExpressionAtlasiQ9BR11. baseline.
GenevestigatoriQ9BR11.

Organism-specific databases

HPAiHPA041147.
HPA046751.

Interactioni

Protein-protein interaction databases

BioGridi124678. 2 interactions.
IntActiQ9BR11. 3 interactions.

Structurei

3D structure databases

ProteinModelPortaliQ9BR11.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Contains 1 SWIM-type zinc finger.PROSITE-ProRule annotation

Zinc finger

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri363 – 40543SWIM-typePROSITE-ProRule annotationAdd
BLAST

Keywords - Domaini

Zinc-finger

Phylogenomic databases

eggNOGiNOG45779.
GeneTreeiENSGT00390000017273.
HOGENOMiHOG000231003.
HOVERGENiHBG099855.
InParanoidiQ9BR11.
OMAiIWLAHRW.
OrthoDBiEOG7327NB.
PhylomeDBiQ9BR11.
TreeFamiTF335703.

Family and domain databases

InterProiIPR007527. Znf_SWIM.
[Graphical view]
PfamiPF04434. SWIM. 1 hit.
[Graphical view]
PROSITEiPS50966. ZF_SWIM. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9BR11-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MLERLKAPWS AALQRKYFDL GIWTAPISPM ALTMLNGLLI KDSSPPMLLH
60 70 80 90 100
QVNKTAQLDT FNYQSCFMQS VFDHFPEILF IHRTYNPRGK VLYTFLVDGP
110 120 130 140 150
RVQLEGHLAR AVYFAIPAKE DTEGLAQMFQ VFKKFNPAWE RVCTILVDPH
160 170 180 190 200
FLPLPILAME FPTAEVLLSA FHICKFLQAK FYQLSLERPV ERLLLTSLQS
210 220 230 240 250
TMCSATAGNL RKLYTLLSNC IPPAKLPELH SHWLLNDRIW LAHRWRSRAE
260 270 280 290 300
SSHYFQSLEV TTHILSQFFG TTPSEKQGMA SLFRYMQQNS ADKANFNQGL
310 320 330 340 350
CAQNNHAPSD TIPESPKLEQ LVESHIQHSL NAICTGPAAQ LCLGELAVVQ
360 370 380 390 400
KSTHLIGSGS EKMNIQILED THKVQPQPPA SCSCYFNQAF HLPCRHILAM
410 420 430 440 450
LSARRQVLQP DMLPAQWTAG CATSLDSILG SKWSETLDKH LAVTHLTEEV
460 470 480
GQLLQHCTKE EFERRYSTLR ELADSWIGPY EQVQL
Length:485
Mass (Da):55,071
Last modified:August 30, 2005 - v2
Checksum:iF7447E98EFC6FD6E
GO

Natural variant

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Natural varianti101 – 1011R → Q.
Corresponds to variant rs3746500 [ dbSNP | Ensembl ].
VAR_020445

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL008726 Genomic DNA. Translation: CAI20247.1.
BC001672 mRNA. Translation: AAH01672.3.
BC080525 mRNA. Translation: AAH80525.2.
CCDSiCCDS13382.2.
RefSeqiNP_542170.3. NM_080603.4.
XP_005260667.1. XM_005260610.2.
XP_005260668.1. XM_005260611.2.
UniGeneiHs.517075.

Genome annotation databases

EnsembliENST00000372520; ENSP00000361598; ENSG00000168612.
ENST00000372523; ENSP00000361601; ENSG00000168612.
GeneIDi90204.
KEGGihsa:90204.
UCSCiuc010ghi.3. human.

Polymorphism databases

DMDMi73920980.

Keywords - Coding sequence diversityi

Polymorphism

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL008726 Genomic DNA. Translation: CAI20247.1 .
BC001672 mRNA. Translation: AAH01672.3 .
BC080525 mRNA. Translation: AAH80525.2 .
CCDSi CCDS13382.2.
RefSeqi NP_542170.3. NM_080603.4.
XP_005260667.1. XM_005260610.2.
XP_005260668.1. XM_005260611.2.
UniGenei Hs.517075.

3D structure databases

ProteinModelPortali Q9BR11.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

BioGridi 124678. 2 interactions.
IntActi Q9BR11. 3 interactions.

PTM databases

PhosphoSitei Q9BR11.

Polymorphism databases

DMDMi 73920980.

Proteomic databases

MaxQBi Q9BR11.
PaxDbi Q9BR11.
PRIDEi Q9BR11.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENST00000372520 ; ENSP00000361598 ; ENSG00000168612 .
ENST00000372523 ; ENSP00000361601 ; ENSG00000168612 .
GeneIDi 90204.
KEGGi hsa:90204.
UCSCi uc010ghi.3. human.

Organism-specific databases

CTDi 90204.
GeneCardsi GC20P044509.
HGNCi HGNC:16155. ZSWIM1.
HPAi HPA041147.
HPA046751.
neXtProti NX_Q9BR11.
PharmGKBi PA25704.
GenAtlasi Search...

Phylogenomic databases

eggNOGi NOG45779.
GeneTreei ENSGT00390000017273.
HOGENOMi HOG000231003.
HOVERGENi HBG099855.
InParanoidi Q9BR11.
OMAi IWLAHRW.
OrthoDBi EOG7327NB.
PhylomeDBi Q9BR11.
TreeFami TF335703.

Enzyme and pathway databases

SignaLinki Q9BR11.

Miscellaneous databases

ChiTaRSi ZSWIM1. human.
GenomeRNAii 90204.
NextBioi 76599.
PROi Q9BR11.

Gene expression databases

Bgeei Q9BR11.
CleanExi HS_ZSWIM1.
ExpressionAtlasi Q9BR11. baseline.
Genevestigatori Q9BR11.

Family and domain databases

InterProi IPR007527. Znf_SWIM.
[Graphical view ]
Pfami PF04434. SWIM. 1 hit.
[Graphical view ]
PROSITEi PS50966. ZF_SWIM. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "The DNA sequence and comparative analysis of human chromosome 20."
    Deloukas P., Matthews L.H., Ashurst J.L., Burton J., Gilbert J.G.R., Jones M., Stavrides G., Almeida J.P., Babbage A.K., Bagguley C.L., Bailey J., Barlow K.F., Bates K.N., Beard L.M., Beare D.M., Beasley O.P., Bird C.P., Blakey S.E.
    , Bridgeman A.M., Brown A.J., Buck D., Burrill W.D., Butler A.P., Carder C., Carter N.P., Chapman J.C., Clamp M., Clark G., Clark L.N., Clark S.Y., Clee C.M., Clegg S., Cobley V.E., Collier R.E., Connor R.E., Corby N.R., Coulson A., Coville G.J., Deadman R., Dhami P.D., Dunn M., Ellington A.G., Frankland J.A., Fraser A., French L., Garner P., Grafham D.V., Griffiths C., Griffiths M.N.D., Gwilliam R., Hall R.E., Hammond S., Harley J.L., Heath P.D., Ho S., Holden J.L., Howden P.J., Huckle E., Hunt A.R., Hunt S.E., Jekosch K., Johnson C.M., Johnson D., Kay M.P., Kimberley A.M., King A., Knights A., Laird G.K., Lawlor S., Lehvaeslaiho M.H., Leversha M.A., Lloyd C., Lloyd D.M., Lovell J.D., Marsh V.L., Martin S.L., McConnachie L.J., McLay K., McMurray A.A., Milne S.A., Mistry D., Moore M.J.F., Mullikin J.C., Nickerson T., Oliver K., Parker A., Patel R., Pearce T.A.V., Peck A.I., Phillimore B.J.C.T., Prathalingam S.R., Plumb R.W., Ramsay H., Rice C.M., Ross M.T., Scott C.E., Sehra H.K., Shownkeen R., Sims S., Skuce C.D., Smith M.L., Soderlund C., Steward C.A., Sulston J.E., Swann R.M., Sycamore N., Taylor R., Tee L., Thomas D.W., Thorpe A., Tracey A., Tromans A.C., Vaudin M., Wall M., Wallis J.M., Whitehead S.L., Whittaker P., Willey D.L., Williams L., Williams S.A., Wilming L., Wray P.W., Hubbard T., Durbin R.M., Bentley D.R., Beck S., Rogers J.
    Nature 414:865-871(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  2. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Colon.

Entry informationi

Entry nameiZSWM1_HUMAN
AccessioniPrimary (citable) accession number: Q9BR11
Secondary accession number(s): Q5JZH2, Q9BR12, Q9BV30
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 25, 2003
Last sequence update: August 30, 2005
Last modified: October 29, 2014
This is version 93 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 20
    Human chromosome 20: entries, gene names and cross-references to MIM
  2. Human entries with polymorphisms or disease mutations
    List of human entries with polymorphisms or disease mutations
  3. Human polymorphisms and disease mutations
    Index of human polymorphisms and disease mutations
  4. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3