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Protein
Submitted name:

TUBby-related

Gene

tub-2

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

SignaLinkiQ9BL53.

Names & Taxonomyi

Protein namesi
Submitted name:
TUBby-relatedImported
Gene namesi
Name:tub-2Imported
ORF Names:CELE_Y71G12A.3Imported, Y71G12A.3Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome I

Organism-specific databases

WormBaseiY71G12A.3a; CE30571; WBGene00022139; tub-2.

PTM / Processingi

Proteomic databases

PaxDbiQ9BL53.
PRIDEiQ9BL53.

Expressioni

Gene expression databases

ExpressionAtlasiQ9BL53. baseline.

Interactioni

Protein-protein interaction databases

IntActiQ9BL53. 1 interaction.
MINTiMINT-3386900.
STRINGi6239.Y71G12A.3.

Structurei

3D structure databases

ProteinModelPortaliQ9BL53.
SMRiQ9BL53. Positions 113-205, 809-863.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini65 – 10642WD_REPEATS_REGIONInterPro annotationAdd
BLAST

Sequence similaritiesi

Belongs to the TUB family.SAAS annotation

Keywords - Domaini

WD repeatUniRule annotation

Phylogenomic databases

eggNOGiKOG2503. Eukaryota.
ENOG410YEKG. LUCA.
GeneTreeiENSGT00610000085970.
HOGENOMiHOG000022247.
InParanoidiQ9BL53.
OMAiTSEERQF.
OrthoDBiEOG78H3SJ.
PhylomeDBiQ9BL53.

Family and domain databases

Gene3Di2.130.10.10. 1 hit.
3.20.90.10. 3 hits.
InterProiIPR000007. Tubby_C.
IPR025659. Tubby_C-like.
IPR015943. WD40/YVTN_repeat-like_dom.
IPR001680. WD40_repeat.
IPR017986. WD40_repeat_dom.
[Graphical view]
PfamiPF01167. Tub. 1 hit.
[Graphical view]
PRINTSiPR01573. SUPERTUBBY.
SMARTiSM00320. WD40. 2 hits.
[Graphical view]
SUPFAMiSSF54518. SSF54518. 2 hits.
PROSITEiPS50082. WD_REPEATS_2. 1 hit.
PS50294. WD_REPEATS_REGION. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9BL53-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKILWESDWQ GARIEQTITH LSWIQQQDKP DHGLLGVGTE TGSVGVTLTD
60 70 80 90 100
FKPTPDDLTR YNFNLRGHHN AIRMVTWNKS QSKLASCDAS GIIYVWVRND
110 120 130 140 150
DRWSVELVND RGVKVSDLSW SPCGGSALIC YDDNFVLIGS ANGQRVWSNS
160 170 180 190 200
FPLPAAVTCG VWAPDSRQLV LGFSTGTIQV LSNAGVNITS RSFTEDKLTQ
210 220 230 240 250
MAFSPLRTKV REVEWTLAML SSANKIYMIS AYDQLHPAIY RSKFQVIRME
260 270 280 290 300
WNTDGTILAL INANNELVMI DTTCRVIHRE RIPIADKEKT LIPNPPPTQK
310 320 330 340 350
LTAFTWAHNG NVVIIAAGGC LTVGRILFGV PSLFEIVTYD LWKMMGCSSK
360 370 380 390 400
KVDKLPIPLK EMNALRELDH HVIRCRIPRS QDMCSYVCSV VDARCYCTIR
410 420 430 440 450
PLARGSHTYV LCFEHLGGLV PLLLGRQVNR FLPQFQIFMY QSKPPTSSPP
460 470 480 490 500
SGSSAQVEDV NSIFRYSTGR NSLWRRSKRQ IRALMSRHVR PTRPDTRLLQ
510 520 530 540 550
VTSNVWCTRF NISSLSPSLL PTFLGQVIYK TSVLHLQPRQ MTIDLAVLQR
560 570 580 590 600
KDGKELPEAS VDGTTHMTSS PDQGLTSEER QFFQKILAEC LSLRAVINSS
610 620 630 640 650
NFGKPPPPAA ASTISLPCQP STSKEPDSSA HTTPISTRTV ESKHDVTSMA
660 670 680 690 700
SSVSTWHEEI EALAFIDGDA DEKAMLVQPA LKTGWAAMEQ ASKKDAEVIR
710 720 730 740 750
SHVDKLASIA EQLSKRHGDF NVKRDKASIN KMRSQMKTLL RRVNEIEQKV
760 770 780 790 800
ANGDVKTEVR QLLNTLNEMK KALGEGVPKS GRSLNSTCKI ETMTNKTPFW
810 820 830 840 850
NEQNQVYQLD FGGRVTQESA KNFQIELDSK QVLQFGRIEG GSYTLDFRYP
860
FSAAQAFAVA LASITQRLK
Length:869
Mass (Da):97,188
Last modified:June 1, 2002 - v2
Checksum:i9CF71FEF30E1EAF3
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284601 Genomic DNA. Translation: CCD72996.1.
RefSeqiNP_490913.2. NM_058512.4.
UniGeneiCel.24853.

Genome annotation databases

EnsemblMetazoaiY71G12A.3a; Y71G12A.3a; WBGene00022139.
GeneIDi171758.
KEGGicel:CELE_Y71G12A.3.
UCSCiY71G12A.3. c. elegans.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284601 Genomic DNA. Translation: CCD72996.1.
RefSeqiNP_490913.2. NM_058512.4.
UniGeneiCel.24853.

3D structure databases

ProteinModelPortaliQ9BL53.
SMRiQ9BL53. Positions 113-205, 809-863.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiQ9BL53. 1 interaction.
MINTiMINT-3386900.
STRINGi6239.Y71G12A.3.

Proteomic databases

PaxDbiQ9BL53.
PRIDEiQ9BL53.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiY71G12A.3a; Y71G12A.3a; WBGene00022139.
GeneIDi171758.
KEGGicel:CELE_Y71G12A.3.
UCSCiY71G12A.3. c. elegans.

Organism-specific databases

CTDi171758.
WormBaseiY71G12A.3a; CE30571; WBGene00022139; tub-2.

Phylogenomic databases

eggNOGiKOG2503. Eukaryota.
ENOG410YEKG. LUCA.
GeneTreeiENSGT00610000085970.
HOGENOMiHOG000022247.
InParanoidiQ9BL53.
OMAiTSEERQF.
OrthoDBiEOG78H3SJ.
PhylomeDBiQ9BL53.

Enzyme and pathway databases

SignaLinkiQ9BL53.

Miscellaneous databases

NextBioi872569.

Gene expression databases

ExpressionAtlasiQ9BL53. baseline.

Family and domain databases

Gene3Di2.130.10.10. 1 hit.
3.20.90.10. 3 hits.
InterProiIPR000007. Tubby_C.
IPR025659. Tubby_C-like.
IPR015943. WD40/YVTN_repeat-like_dom.
IPR001680. WD40_repeat.
IPR017986. WD40_repeat_dom.
[Graphical view]
PfamiPF01167. Tub. 1 hit.
[Graphical view]
PRINTSiPR01573. SUPERTUBBY.
SMARTiSM00320. WD40. 2 hits.
[Graphical view]
SUPFAMiSSF54518. SSF54518. 2 hits.
PROSITEiPS50082. WD_REPEATS_2. 1 hit.
PS50294. WD_REPEATS_REGION. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Genome sequence of the nematode C. elegans: a platform for investigating biology."
    Caenorhabditis elegans Sequencing Consortium
    Sulson J.E., Waterston R.
    Science 282:2012-2018(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Bristol N2Imported.

Entry informationi

Entry nameiQ9BL53_CAEEL
AccessioniPrimary (citable) accession number: Q9BL53
Entry historyi
Integrated into UniProtKB/TrEMBL: June 1, 2001
Last sequence update: June 1, 2002
Last modified: May 11, 2016
This is version 123 of the entry and version 2 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.