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Protein

60S ribosomal protein L17

Gene

rpl-17

Organism
Caenorhabditis elegans
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-CEL-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-CEL-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-CEL-72689. Formation of a pool of free 40S subunits.
R-CEL-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-CEL-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-CEL-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L17
Gene namesi
Name:rpl-17
ORF Names:Y48G8AL.8
OrganismiCaenorhabditis elegans
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome I

Organism-specific databases

WormBaseiY48G8AL.8; CE22195; WBGene00004429; rpl-17.

Subcellular locationi

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003234001 – 18760S ribosomal protein L17Add BLAST187

Proteomic databases

EPDiQ9BL19.
PaxDbiQ9BL19.
PeptideAtlasiQ9BL19.
PRIDEiQ9BL19.

Expressioni

Gene expression databases

BgeeiWBGene00004429.

Interactioni

Protein-protein interaction databases

BioGridi37191. 3 interactors.
DIPiDIP-26651N.
IntActiQ9BL19. 2 interactors.
MINTiMINT-1111583.
STRINGi6239.Y48G8AL.8a.2.

Structurei

3D structure databases

ProteinModelPortaliQ9BL19.
SMRiQ9BL19.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG3353. Eukaryota.
COG0091. LUCA.
GeneTreeiENSGT00390000014873.
HOGENOMiHOG000205045.
InParanoidiQ9BL19.
KOiK02880.
OMAiINGWKLQ.
OrthoDBiEOG091G0FOW.
PhylomeDBiQ9BL19.

Family and domain databases

CDDicd00336. Ribosomal_L22. 1 hit.
HAMAPiMF_01331_A. Ribosomal_L22_A. 1 hit.
InterProiView protein in InterPro
IPR001063. Ribosomal_L22.
IPR018260. Ribosomal_L22/L17_CS.
IPR005721. Ribosomal_L22/L17_euk/arc.
PANTHERiPTHR11593. PTHR11593. 1 hit.
PfamiView protein in Pfam
PF00237. Ribosomal_L22. 1 hit.
SUPFAMiSSF54843. SSF54843. 1 hit.
TIGRFAMsiTIGR01038. uL22_arch_euk. 1 hit.
PROSITEiView protein in PROSITE
PS00464. RIBOSOMAL_L22. 1 hit.

Sequences (2)i

Sequence statusi: Complete.

This entry describes 2 isoformsi produced by alternative splicing. AlignAdd to basket

Isoform a (identifier: Q9BL19-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MTKVHYSRAP ENSTKSCKAR GSDLRVHFKN THEAAMALRG MPLRRAQAFL
60 70 80 90 100
NHVKEHKEIV PFRRFHGGIG RAAQTKQWNT TQGRWPVKSA DFLLDLLKNA
110 120 130 140 150
ESNAEYKGLD VDHLVIEHIN VQRAAKLRRR TYRAHGRINP YMSSPCHIEV
160 170 180
ILAEKEDVVS KPTDDAAPKV KKESKRKQRR QLARGEF
Length:187
Mass (Da):21,513
Last modified:June 1, 2001 - v1
Checksum:i275B0781611075EA
GO
Isoform b (identifier: Q9BL19-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     66-93: Missing.

Note: No experimental confirmation available.
Show »
Length:159
Mass (Da):18,419
Checksum:iEB6852B9D8A6BFD8
GO

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Alternative sequenceiVSP_03201966 – 93Missing in isoform b. CuratedAdd BLAST28

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FO081800 Genomic DNA. Translation: CCD73463.1.
FO081800 Genomic DNA. Translation: CCD73464.1.
RefSeqiNP_740781.1. NM_170799.4. [Q9BL19-1]
UniGeneiCel.9029.

Genome annotation databases

EnsemblMetazoaiY48G8AL.8a; Y48G8AL.8a; WBGene00004429. [Q9BL19-1]
GeneIDi171692.
KEGGicel:CELE_Y48G8AL.8.
UCSCiY48G8AL.8b. c. elegans. [Q9BL19-1]

Keywords - Coding sequence diversityi

Alternative splicing

Similar proteinsi

Entry informationi

Entry nameiRL17_CAEEL
AccessioniPrimary (citable) accession number: Q9BL19
Secondary accession number(s): Q8WTK4
Entry historyiIntegrated into UniProtKB/Swiss-Prot: March 18, 2008
Last sequence update: June 1, 2001
Last modified: September 27, 2017
This is version 111 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programCaenorhabditis annotation project

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Caenorhabditis elegans
    Caenorhabditis elegans: entries, gene names and cross-references to WormBase
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families