Unreviewed, UniProtKB/TrEMBL Q9BIB5 (Q9BIB5_CAEEL)

Names and origin

Protein names

Submitted name:
    Calsyntenin EMBL AAM00045.1
Submitted name:
    Calsyntenin/alcadein homolog protein 1, isoform a EMBL AAK31387.1

Gene names

Name:	casy-1 EMBL AAK31387.1 WormBase WBGene00000403 WormPep B0034.3a
ORF Names:	B0034.3 EMBL AAK31387.1 WormBase WBGene00000403 WormPep B0034.3a

Organism

Caenorhabditis elegans [Complete proteome]

Taxonomic identifier

6239 [NCBI]

Taxonomic lineage

Eukaryota › Metazoa › Nematoda › Chromadorea › Rhabditida › Rhabditoidea › Rhabditidae › Peloderinae › Caenorhabditis

Protein attributes

Sequence length	984 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level.

Ontologies

Keywords
Cellular component	Membrane
Domain	Transmembrane Spearmint SPM002126
Ligand	Calcium RuleBase RU000484V3
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	embryonic development ending in birth or egg hatching Inferred from mutant phenotype. Source: WormBase homophilic cell adhesion Inferred from electronic annotation. Source: InterPro
Cellular component	integral to membrane Inferred from electronic annotation. Source: UniProtKB-KW
Molecular function	calcium ion binding Inferred from electronic annotation. Source: UniProtKB-KW protein binding Inferred from physical interaction. Source: IntAct
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q9BIB5-1 [UniParc]. Last modified June 1, 2001. Version 1. Checksum: 4DA8A7F072F43493	FASTA	984	109,261
	10 20 30 40 50 60 MRTAYFIFVG ALLGVSYAKH HHAARAPIIN LQGAEELVAV VREDENIIST VPDFAILSET 70 80 90 100 110 120 GPVCNYLLTS QNNEPVPFDI QVVDKYTGAA VLRVKDAATL DCKKPEYNLQ VQAVKCDNDN 130 140 150 160 170 180 VKSEGVSLKI RVKDTNNHAP EIENPWYTFH VEEGKVVEEV GVLKASDKDC GHPNGEICEY 190 200 210 220 230 240 EITNGLKELP FAINNHGVLR TTQPLNFTQS KSYILTVVAI DCAMRKSKSS LVTVHVDEKC 250 260 270 280 290 300 VQGITAMNER VNYAPGVGSK LLLPDVSLEF CEKETICEPK SVQSVIELRA GHVTQGCARD 310 320 330 340 350 360 TVYDNQTIQS CGLSTATVKL LNEEALTSSA ENQILADQGI EFDGARGVTV SDENHQGLIP 370 380 390 400 410 420 DHFTLSFSMK HAAGTKDEQS NKQNILCESD DFNMNRHHFS VYIRHCKLEV VLRREAGATS 430 440 450 460 470 480 DFRAAEWRWS MPEVCDNEWH SYSLLFNGID DVNVIVDGKS FKADERNPEI LDDWPLHKTK 490 500 510 520 530 540 ATKTKLVVGA CWHGRQQKLA QFFRGQLSSL YLLSGAVESE RAIKCAHTCP EQLQFTGVDE 550 560 570 580 590 600 LLESQSATFS PDQTSLTLKA ETSKQIGQML KRVAYVNTQE KPAPGHRVFL VETEVTCKQD 610 620 630 640 650 660 DKKMKLPSSK GYVFVQQAAE PTLSISASSQ LKSNQHMVKV GQAMVPDLTI TISQNNADGE 670 680 690 700 710 720 LEDVTQSHKI DYCKMHLQPA RDMDVEYFSS PASLIAALNI EFEHDKDGIL LRGEESAQGY 730 740 750 760 770 780 KEVLSKVHYF NTRPESYAKR VYTVQCAMLK GRVLSNQLFV TMTIDGVTTT TSTTTEAPAP 790 800 810 820 830 840 AQPDPIQFNF NSGETALDSL ELIERHFEPA FDQLGSSRLQ NILEMDLPRP KALLSHHGYD 850 860 870 880 890 900 VGQGAIAGGA VAVVVVVCVG FLLVLLVIGV LKMRDTPMPR RRRQKRQSDG GMHWDDSGMN 910 920 930 940 950 960 ITVNPLDDVE KNGGAIDEFS DEEEEEETDG ESECSYRDEE DDVSEDEEDQ TEVLPHLDAN 970 980 QRVVGGLEWD DEDAISTNAR SYRV

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Genome sequence of the nematode C. elegans: a platform for investigating biology." The C. elegans sequencing consortium Science 282:2012-2018(1998) [PubMed: 9851916] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Bristol N2.
[2]	"Proteomics reveals N-linked glycoprotein diversity in Caenorhabditis elegans and suggests an atypical translocation mechanism for integral membrane proteins." Kaji H., Kamiie J., Kawakami H., Kido K., Yamauchi Y., Shinkawa T., Taoka M., Takahashi N., Isobe T. Mol. Cell. Proteomics 6:2100-2109(2007) [PubMed: 17761667] [Abstract] Cited for: GLYCOSYLATION [LARGE SCALE ANALYSIS], MASS SPECTROMETRY.
[3]	"Caenorhabditis elegans calsyntenin gene cDNA sequence." Duan Y., Hedgecock E.M. Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	U23528 Genomic DNA. Translation: AAK31387.1. AY091591 mRNA. Translation: AAM00045.1.
RefSeq	NP_001021110.1.
UniGene	Cel.5204
3D structure databases
SMR	Q9BIB5. Positions 60-236.
ModBase	Search...
Protein-protein interaction databases
DIP	DIP-27301N.
IntAct	Q9BIB5. 3 interactions.
Proteomic databases
PRIDE	Q9BIB5.
Genome annotation databases
Ensembl	B0034.3a; B0034.3a; B0034.3; Caenorhabditis elegans. [Genome view]
GeneID	174006.
KEGG	cel:B0034.3.
NMPDR	fig|6239.3.peg.5756.
UCSC	B0034.3c.1. c. elegans.
Organism-specific databases
CTD	174006.
WormBase	WBGene00000403. casy-1.
WormPep	B0034.3a. CE27048. [WorfDB]
Phylogenomic databases
HOGENOM	HBG379873.
InParanoid	Q9BIB5.
OMA	VEVNVIH.
PhylomeDB	Q9BIB5.
Gene expression databases
ArrayExpress	Q9BIB5.
Family and domain databases
InterPro	IPR002126. Cadherin. IPR015919. Cadherin-like. IPR008985. ConA-like_lec_gl. [Graphical view]
Gene3D	G3DSA:2.60.40.60. Cadherin. 1 hit.
Pfam	PF00028. Cadherin. 1 hit. [Graphical view]
PRINTS	PR00205. CADHERIN.
SMART	SM00112. CA. 2 hits. [Graphical view]
PROSITE	PS50268. CADHERIN_2. 2 hits. [Graphical view]
ProtoNet	Search...
Other Resources
NextBio	882089.

Entry information

Entry name

Q9BIB5_CAEEL

Accession

Primary (citable) accession number: Q9BIB5

Entry history

Integrated into UniProtKB/TrEMBL:	June 1, 2001
Last sequence update:	June 1, 2001
Last modified:	February 9, 2010
This is version 81 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)