Reviewed, UniProtKB/Swiss-Prot Q9AWS7 (Y1407_ORYSJ)

Names and origin

Protein names

Recommended name:
    Putative AP2/ERF and B3 domain-containing protein Os01g0140700

Gene names

Ordered Locus Names:	Os01g0140700, LOC_Os01g04750
ORF Names:	P0480E02.22

Organism

Oryza sativa subsp. japonica (Rice)

Taxonomic identifier

39947 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › Liliopsida › Poales › Poaceae › BEP clade › Ehrhartoideae › Oryzeae › Oryza

Protein attributes

Sequence length	317 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Inferred from homology.

General annotation (Comments)

Subcellular location	Nucleus By similarity.
Sequence similarities	Contains 1 AP2/ERF DNA-binding domain. Contains 1 TF-B3 DNA-binding domain.

Ontologies

Keywords
Biological process	Transcription Transcription regulation
Cellular component	Nucleus
Ligand	DNA-binding
Gene Ontology (GO)
Biological process	regulation of transcription, DNA-dependent Inferred from electronic annotation. Source: InterPro transcription Inferred from electronic annotation. Source: UniProtKB-KW
Cellular component	nucleus Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular function	transcription factor activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 317	317	Putative AP2/ERF and B3 domain-containing protein Os01g0140700		PRO_0000377730
Regions
	DNA binding	66 – 121	56	AP2/ERF
	DNA binding	178 – 287	110	TF-B3
	Compositional bias	28 – 34	7	Poly-Glu

Sequences

	Sequence		Length	Mass (Da)
	Q9AWS7-1 [UniParc]. Last modified June 1, 2001. Version 1. Checksum: EF124A3839E68CE5	FASTA	317	35,296
	10 20 30 40 50 60 MEQEAAMVVF SCNSGSGGSS STTDSKQEEE EEEELAAMEE DELIHVVQAA ELRLPSSTTA 70 80 90 100 110 120 TRPSSRYKGV VPQPNGRWGA QIYERHARVW LGTFPDEEAA ARAYDVAALR FRGRDAVTNR 130 140 150 160 170 180 APAAEGASAG ELAFLAAHSK AEVVDMLRKH TYDDELQQGL RRGSRAQPTP RWAREPLFEK 190 200 210 220 230 240 AVTPSDVGKL NRLVVPKQQA ERHFPFPLRR HSSDAAGKGV LLNFEDGDGK VWRFRYSYWN 250 260 270 280 290 300 SSQSYVLTKG WSRFVREKGL RPGDTVAFSR SAAAWGTEKH LLIDCKKMER NNLATVDDDA 310 RVVVKLFGVD IAGDKTR

References

[1]

"The genome sequence and structure of rice chromosome 1." Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y., Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H., Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., Okamoto M. , Ando T., Aoki H., Arita K., Hamada M., Harada C., Hijishita S., Honda M., Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito S., Ito T., Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Katagiri S., Kikuta A., Kobayashi N., Kono I., Machita K., Maehara T., Mizuno H., Mizubayashi T., Mukai Y., Nagasaki H., Nakashima M., Nakama Y., Nakamichi Y., Nakamura M., Namiki N., Negishi M., Ohta I., Ono N., Saji S., Sakai K., Shibata M., Shimokawa T., Shomura A., Song J., Takazaki Y., Terasawa K., Tsuji K., Waki K., Yamagata H., Yamane H., Yoshiki S., Yoshihara R., Yukawa K., Zhong H., Iwama H., Endo T., Ito H., Hahn J.H., Kim H.-I., Eun M.-Y., Yano M., Jiang J., Gojobori T. Nature 420:312-316(2002) [PubMed: 12447438] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Nipponbare.

Cross-references

Sequence databases
EMBLGenBankDDBJ	AP002913 Genomic DNA. Translation: BAB21211.1.
3D structure databases
HSSP	HSSP built from PDB template 1WID based on UniProtKB Q9ZWM9.
SMR	Q9AWS7. Positions 175-292.
ModBase	Search...
Genome annotation databases
NMPDR	fig|39947.1.peg.1138.
Organism-specific databases
Gramene	Q9AWS7.
Family and domain databases
InterPro	IPR016177. DNA-bd_integrase-typ. IPR003340. TF_B3. IPR001471. TF_ERF_DNA-bd. [Graphical view]
Gene3D	G3DSA:3.30.730.10. TF_ERF. 1 hit.
Pfam	PF00847. AP2. 1 hit. PF02362. B3. 1 hit. [Graphical view]
SMART	SM00380. AP2. 1 hit. [Graphical view]
PROSITE	PS51032. AP2_ERF. 1 hit. PS50863. B3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Y1407_ORYSJ

Accession

Primary (citable) accession number: Q9AWS7

Entry history

Integrated into UniProtKB/Swiss-Prot:	June 16, 2009
Last sequence update:	June 1, 2001
Last modified:	November 24, 2009
This is version 41 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

PPAP (Plant Proteome Annotation Project)