Q9AWS0 (Y1410_ORYSJ) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
AP2/ERF and B3 domain-containing protein Os01g0141000

Gene names

Ordered Locus Names:	Os01g0141000, LOC_Os01g04800
ORF Names:	P0480E02.32

Organism

Oryza sativa subsp. japonica (Rice)

Taxonomic identifier

39947 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › Liliopsida › Poales › Poaceae › BEP clade › Ehrhartoideae › Oryzeae › Oryza

Protein attributes

Sequence length	365 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

General annotation (Comments)

Subcellular location	Nucleus By similarity.
Sequence similarities	Contains 1 AP2/ERF DNA-binding domain. Contains 1 TF-B3 DNA-binding domain.

Ontologies

Keywords
Biological process	Transcription Transcription regulation
Cellular component	Nucleus
Ligand	DNA-binding
Gene Ontology (GO)
Biological process	transcription, DNA-dependent Inferred from electronic annotation. Source: UniProtKB-KW
Cellular component	nucleus Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular function	DNA binding Inferred from electronic annotation. Source: UniProtKB-KW sequence-specific DNA binding transcription factor activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 365	365	AP2/ERF and B3 domain-containing protein Os01g0141000		PRO_0000377731
Regions
	DNA binding	68 – 123	56	AP2/ERF
	DNA binding	182 – 294	113	TF-B3

Sequences

	Sequence		Length	Mass (Da)
	Q9AWS0 [UniParc]. Last modified June 1, 2001. Version 1. Checksum: 0A1EAD4E7986FE6C	FASTA	365	39,280
	10 20 30 40 50 60 MGVVSFSSTS SGASTATTES GGAVRMSPEP VVAVAAAAQQ LPVVKGVDSA DEVVTSRPAA 70 80 90 100 110 120 AAAQQSSRYK GVVPQPNGRW GAQIYERHAR VWLGTFPDEE AAARAYDVAA LRYRGRDAAT 130 140 150 160 170 180 NFPGAAASAA ELAFLAAHSK AEIVDMLRKH TYADELRQGL RRGRGMGARA QPTPSWAREP 190 200 210 220 230 240 LFEKAVTPSD VGKLNRLVVP KQHAEKHFPL RRAASSDSAS AAATGKGVLL NFEDGEGKVW 250 260 270 280 290 300 RFRYSYWNSS QSYVLTKGWS RFVREKGLRA GDTIVFSRSA YGPDKLLFID CKKNNAAAAT 310 320 330 340 350 360 TTCAGDERPT TSGAEPRVVR LFGVDIAGGD CRKRERAVEM GQEVFLLKRQ CVVHQRTPAL GALLL

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"The genome sequence and structure of rice chromosome 1." Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y., Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H., Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., Okamoto M. , Ando T., Aoki H., Arita K., Hamada M., Harada C., Hijishita S., Honda M., Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito S., Ito T., Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Katagiri S., Kikuta A., Kobayashi N., Kono I., Machita K., Maehara T., Mizuno H., Mizubayashi T., Mukai Y., Nagasaki H., Nakashima M., Nakama Y., Nakamichi Y., Nakamura M., Namiki N., Negishi M., Ohta I., Ono N., Saji S., Sakai K., Shibata M., Shimokawa T., Shomura A., Song J., Takazaki Y., Terasawa K., Tsuji K., Waki K., Yamagata H., Yamane H., Yoshiki S., Yoshihara R., Yukawa K., Zhong H., Iwama H., Endo T., Ito H., Hahn J.H., Kim H.-I., Eun M.-Y., Yano M., Jiang J., Gojobori T. Nature 420:312-316(2002) [PubMed: 12447438] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Nipponbare.
[2]	"The map-based sequence of the rice genome." International rice genome sequencing project (IRGSP) Nature 436:793-800(2005) [PubMed: 16100779] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Nipponbare.
[3]	"The rice annotation project database (RAP-DB): 2008 update." The rice annotation project (RAP) Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed: 18089549] [Abstract] Cited for: GENOME REANNOTATION. Strain: cv. Nipponbare.
[4]	"Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice." The rice full-length cDNA consortium Science 301:376-379(2003) [PubMed: 12869764] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Strain: cv. Nipponbare.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AP002913 Genomic DNA. Translation: BAB21218.1. AP008207 Genomic DNA. Translation: BAF03896.1. AK065008 mRNA. Translation: BAG89320.1.
RefSeq	NP_001041982.1. NM_001048517.1.
UniGene	Os.27299.
3D structure databases
HSSP	HSSP built from PDB template 1WID based on UniProtKB Q9ZWM9.
ProteinModelPortal	Q9AWS0.
ModBase	Search...
Proteomic databases
PRIDE	Q9AWS0.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblPlants	LOC_Os01g04800.1; LOC_Os01g04800.1; LOC_Os01g04800.
GeneID	4325479.
KEGG	osa:4325479.
NMPDR	fig|39947.1.peg.1145.
Organism-specific databases
Gramene	Q9AWS0.
Phylogenomic databases
GeneTree	EPGT00050000004578.
HOGENOM	HBG593123.
OMA	ATNFPGA.
PhylomeDB	Q9AWS0.
ProtClustDB	CLSN2918937.
Family and domain databases
InterPro	IPR003340. B3_DNA-bd. IPR016177. DNA-bd_integrase-typ. IPR015300. DNA-bd_pseudobarrel. IPR001471. TF_ERF_DNA-bd. [Graphical view]
Gene3D	G3DSA:2.40.330.10. G3DSA:2.40.330.10. 1 hit. G3DSA:3.30.730.10. TF_ERF. 1 hit.
Pfam	PF00847. AP2. 1 hit. PF02362. B3. 1 hit. [Graphical view]
SMART	SM00380. AP2. 1 hit. SM01019. B3. 1 hit. [Graphical view]
SUPFAM	SSF54171. DNA-binding_integrase-type. 1 hit. SSF101936. Restrict_endonuc_II_EcoRII_N. 1 hit.
PROSITE	PS51032. AP2_ERF. 1 hit. PS50863. B3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Y1410_ORYSJ

Accession

Primary (citable) accession number: Q9AWS0

Entry history

Integrated into UniProtKB/Swiss-Prot:	June 16, 2009
Last sequence update:	June 1, 2001
Last modified:	January 25, 2012
This is version 62 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Plant Protein Annotation Program