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Protein
Submitted name:

At1g56070/T6H22_13

Gene

T6H22.13

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Unreviewed-Annotation score: Annotation score: 4 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  1. copper ion binding Source: TAIR
  2. GTPase activity Source: InterPro
  3. GTP binding Source: UniProtKB-KW
  4. translation elongation factor activity Source: UniProtKB-KW

GO - Biological processi

  1. response to cold Source: TAIR
  2. response to cytokinin Source: TAIR
Complete GO annotation...

Keywords - Molecular functioni

Elongation factorImported

Keywords - Biological processi

Protein biosynthesis

Keywords - Ligandi

GTP-bindingUniRule annotation, Nucleotide-binding

Enzyme and pathway databases

ReactomeiREACT_284557. Peptide chain elongation.
REACT_317894. Synthesis of diphthamide-EEF2.

Names & Taxonomyi

Protein namesi
Submitted name:
At1g56070/T6H22_13Imported
Submitted name:
Elongation factor EF-2Imported
Submitted name:
Putative elongation factorImported
Gene namesi
Name:T6H22.13Imported
Synonyms:LOS1Imported
Ordered Locus Names:At1g56070Imported, At1g56075Imported
OrganismiArabidopsis thaliana (Mouse-ear cress)Imported
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
ProteomesiUP000006548 Componenti: Chromosome 1

Organism-specific databases

TAIRiAT1G56070.

Subcellular locationi

GO - Cellular componenti

  1. apoplast Source: TAIR
  2. chloroplast Source: TAIR
  3. cytosol Source: TAIR
  4. membrane Source: TAIR
  5. nucleolus Source: TAIR
  6. plasma membrane Source: TAIR
  7. plasmodesma Source: TAIR
  8. vacuolar membrane Source: TAIR
Complete GO annotation...

PTM / Processingi

Proteomic databases

PRIDEiQ9ASR1.
ProMEXiQ9ASR1.

Expressioni

Gene expression databases

ExpressionAtlasiQ9ASR1. baseline and differential.
GenevestigatoriQ9ASR1.

Interactioni

Protein-protein interaction databases

IntActiQ9ASR1. 1 interaction.

Structurei

3D structure databases

ProteinModelPortaliQ9ASR1.
SMRiQ9ASR1. Positions 4-843.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

InParanoidiQ9ASR1.
KOiK03234.
OMAiKMAPEEF.
PhylomeDBiQ9ASR1.

Family and domain databases

Gene3Di3.30.230.10. 1 hit.
3.30.70.240. 1 hit.
3.40.50.300. 1 hit.
InterProiIPR000795. EF_GTP-bd_dom.
IPR009022. EFG_III-V.
IPR000640. EFG_V.
IPR027417. P-loop_NTPase.
IPR020568. Ribosomal_S5_D2-typ_fold.
IPR014721. Ribosomal_S5_D2-typ_fold_subgr.
IPR005225. Small_GTP-bd_dom.
IPR009000. Transl_B-barrel.
IPR005517. Transl_elong_EFG/EF2_IV.
IPR004161. Transl_elong_EFTu/EF1A_2.
[Graphical view]
PfamiPF00679. EFG_C. 1 hit.
PF14492. EFG_II. 1 hit.
PF03764. EFG_IV. 1 hit.
PF00009. GTP_EFTU. 1 hit.
PF03144. GTP_EFTU_D2. 1 hit.
[Graphical view]
PRINTSiPR00315. ELONGATNFCT.
SMARTiSM00838. EFG_C. 1 hit.
SM00889. EFG_IV. 1 hit.
[Graphical view]
SUPFAMiSSF50447. SSF50447. 1 hit.
SSF52540. SSF52540. 1 hit.
SSF54211. SSF54211. 1 hit.
SSF54980. SSF54980. 2 hits.
TIGRFAMsiTIGR00231. small_GTP. 1 hit.
PROSITEiPS00301. EFACTOR_GTP. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9ASR1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVKFTADELR RIMDYKHNIR NMSVIAHVDH GKSTLTDSLV AAAGIIAQEV
60 70 80 90 100
AGDVRMTDTR ADEAERGITI KSTGISLYYE MTDESLKSFT GARDGNEYLI
110 120 130 140 150
NLIDSPGHVD FSSEVTAALR ITDGALVVVD CIEGVCVQTE TVLRQALGER
160 170 180 190 200
IRPVLTVNKM DRCFLELQVD GEEAYQTFSR VIENANVIMA TYEDPLLGDV
210 220 230 240 250
QVYPEKGTVA FSAGLHGWAF TLTNFAKMYA SKFGVVESKM MERLWGENFF
260 270 280 290 300
DPATRKWSGK NTGSPTCKRG FVQFCYEPIK QIIATCMNDQ KDKLWPMLAK
310 320 330 340 350
LGVSMKNDEK ELMGKPLMKR VMQTWLPAST ALLEMMIFHL PSPHTAQRYR
360 370 380 390 400
VENLYEGPLD DQYANAIRNC DPNGPLMLYV SKMIPASDKG RFFAFGRVFA
410 420 430 440 450
GKVSTGMKVR IMGPNYIPGE KKDLYTKSVQ RTVIWMGKRQ ETVEDVPCGN
460 470 480 490 500
TVAMVGLDQF ITKNATLTNE KEVDAHPIRA MKFSVSPVVR VAVQCKVASD
510 520 530 540 550
LPKLVEGLKR LAKSDPMVVC TMEESGEHIV AGAGELHLEI CLKDLQDDFM
560 570 580 590 600
GGAEIIKSDP VVSFRETVCD RSTRTVMSKS PNKHNRLYME ARPMEEGLAE
610 620 630 640 650
AIDDGRIGPR DDPKIRSKIL AEEFGWDKDL AKKIWAFGPE TTGPNMVVDM
660 670 680 690 700
CKGVQYLNEI KDSVVAGFQW ASKEGPLAEE NMRGICFEVC DVVLHSDAIH
710 720 730 740 750
RGGGQVIPTA RRVIYASQIT AKPRLLEPVY MVEIQAPEGA LGGIYSVLNQ
760 770 780 790 800
KRGHVFEEMQ RPGTPLYNIK AYLPVVESFG FSSQLRAATS GQAFPQCVFD
810 820 830 840
HWEMMSSDPL EPGTQASVLV ADIRKRKGLK EAMTPLSEFE DKL
Length:843
Mass (Da):93,891
Last modified:May 31, 2001 - v1
Checksum:i861551554192B2AB
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF367331 mRNA. Translation: AAK32918.1.
AY054461 mRNA. Translation: AAK96653.1.
BT000661 mRNA. Translation: AAN31808.1.
BT000722 mRNA. Translation: AAN31864.1.
BT002714 mRNA. Translation: AAO11630.1.
CP002684 Genomic DNA. Translation: AEE33338.1.
RefSeqiNP_849818.1. NM_179487.1.
UniGeneiAt.47544.

Genome annotation databases

EnsemblPlantsiAT1G56070.1; AT1G56070.1; AT1G56070.
GeneIDi842058.
KEGGiath:AT1G56070.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF367331 mRNA. Translation: AAK32918.1.
AY054461 mRNA. Translation: AAK96653.1.
BT000661 mRNA. Translation: AAN31808.1.
BT000722 mRNA. Translation: AAN31864.1.
BT002714 mRNA. Translation: AAO11630.1.
CP002684 Genomic DNA. Translation: AEE33338.1.
RefSeqiNP_849818.1. NM_179487.1.
UniGeneiAt.47544.

3D structure databases

ProteinModelPortaliQ9ASR1.
SMRiQ9ASR1. Positions 4-843.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiQ9ASR1. 1 interaction.

Proteomic databases

PRIDEiQ9ASR1.
ProMEXiQ9ASR1.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT1G56070.1; AT1G56070.1; AT1G56070.
GeneIDi842058.
KEGGiath:AT1G56070.

Organism-specific databases

TAIRiAT1G56070.

Phylogenomic databases

InParanoidiQ9ASR1.
KOiK03234.
OMAiKMAPEEF.
PhylomeDBiQ9ASR1.

Enzyme and pathway databases

ReactomeiREACT_284557. Peptide chain elongation.
REACT_317894. Synthesis of diphthamide-EEF2.

Miscellaneous databases

PROiQ9ASR1.

Gene expression databases

ExpressionAtlasiQ9ASR1. baseline and differential.
GenevestigatoriQ9ASR1.

Family and domain databases

Gene3Di3.30.230.10. 1 hit.
3.30.70.240. 1 hit.
3.40.50.300. 1 hit.
InterProiIPR000795. EF_GTP-bd_dom.
IPR009022. EFG_III-V.
IPR000640. EFG_V.
IPR027417. P-loop_NTPase.
IPR020568. Ribosomal_S5_D2-typ_fold.
IPR014721. Ribosomal_S5_D2-typ_fold_subgr.
IPR005225. Small_GTP-bd_dom.
IPR009000. Transl_B-barrel.
IPR005517. Transl_elong_EFG/EF2_IV.
IPR004161. Transl_elong_EFTu/EF1A_2.
[Graphical view]
PfamiPF00679. EFG_C. 1 hit.
PF14492. EFG_II. 1 hit.
PF03764. EFG_IV. 1 hit.
PF00009. GTP_EFTU. 1 hit.
PF03144. GTP_EFTU_D2. 1 hit.
[Graphical view]
PRINTSiPR00315. ELONGATNFCT.
SMARTiSM00838. EFG_C. 1 hit.
SM00889. EFG_IV. 1 hit.
[Graphical view]
SUPFAMiSSF50447. SSF50447. 1 hit.
SSF52540. SSF52540. 1 hit.
SSF54211. SSF54211. 1 hit.
SSF54980. SSF54980. 2 hits.
TIGRFAMsiTIGR00231. small_GTP. 1 hit.
PROSITEiPS00301. EFACTOR_GTP. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana."
    Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K.
    , Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P., Feldblyum T.V., Feng J., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y., Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.
    Nature 408:816-820(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. ColumbiaImported.
  2. Cited for: NUCLEOTIDE SEQUENCE.
  3. Cited for: NUCLEOTIDE SEQUENCE.
  4. Cited for: NUCLEOTIDE SEQUENCE.
  5. Cited for: NUCLEOTIDE SEQUENCE.
  6. Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
  7. "Phosphoproteomic analysis of nuclei-enriched fractions from Arabidopsis thaliana."
    Jones A.M., MacLean D., Studholme D.J., Serna-Sanz A., Andreasson E., Rathjen J.P., Peck S.C.
    J. Proteomics 72:439-451(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
  8. TAIR
    Swarbreck D., Lamesch P., Wilks C., Huala E.
    Submitted (JAN-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  9. The Arabidopsis Information Resource (TAIR)
    Submitted (MAR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. ColumbiaImported.

Entry informationi

Entry nameiQ9ASR1_ARATH
AccessioniPrimary (citable) accession number: Q9ASR1
Entry historyi
Integrated into UniProtKB/TrEMBL: May 31, 2001
Last sequence update: May 31, 2001
Last modified: March 31, 2015
This is version 123 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.