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Q9AR38

- PPOC_ORYSJ

UniProt

Q9AR38 - PPOC_ORYSJ

Protein

Protoporphyrinogen oxidase, chloroplastic

Gene

PPOX1

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 77 (01 Oct 2014)
      Sequence version 1 (01 Jun 2001)
      Previous versions | rss
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    Functioni

    Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.

    Catalytic activityi

    Protoporphyrinogen-IX + 3 O2 = protoporphyrin-IX + 3 H2O2.

    Cofactori

    Binds 1 FAD per subunit.By similarity

    Pathwayi

    Regions

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Nucleotide bindingi62 – 676FADBy similarity
    Nucleotide bindingi87 – 882FADBy similarity
    Nucleotide bindingi111 – 1144FADBy similarity
    Nucleotide bindingi510 – 5123FADBy similarity

    GO - Molecular functioni

    1. oxygen-dependent protoporphyrinogen oxidase activity Source: UniProtKB-EC

    GO - Biological processi

    1. chlorophyll biosynthetic process Source: UniProtKB-UniPathway
    2. protoporphyrinogen IX biosynthetic process Source: UniProtKB-UniPathway

    Keywords - Molecular functioni

    Oxidoreductase

    Keywords - Biological processi

    Chlorophyll biosynthesis, Heme biosynthesis, Porphyrin biosynthesis

    Keywords - Ligandi

    FAD, Flavoprotein

    Enzyme and pathway databases

    UniPathwayiUPA00251; UER00324.
    UPA00668.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Protoporphyrinogen oxidase, chloroplastic (EC:1.3.3.4)
    Short name:
    PPO
    Alternative name(s):
    Protoporphyrinogen oxidase 1
    Gene namesi
    Name:PPOX1
    Ordered Locus Names:Os01g0286600, LOC_Os01g18320
    ORF Names:P0498A12.42
    OrganismiOryza sativa subsp. japonica (Rice)
    Taxonomic identifieri39947 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza
    ProteomesiUP000000763: Chromosome 1

    Organism-specific databases

    GrameneiQ9AR38.

    Subcellular locationi

    Plastidchloroplast Curated

    GO - Cellular componenti

    1. chloroplast envelope Source: EnsemblPlants/Gramene
    2. chloroplast thylakoid Source: EnsemblPlants/Gramene

    Keywords - Cellular componenti

    Chloroplast, Plastid

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Transit peptidei1 – 3636ChloroplastSequence AnalysisAdd
    BLAST
    Chaini37 – 536500Protoporphyrinogen oxidase, chloroplasticPRO_0000376074Add
    BLAST

    Proteomic databases

    PRIDEiQ9AR38.

    Structurei

    3D structure databases

    ProteinModelPortaliQ9AR38.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the protoporphyrinogen oxidase family.Curated

    Keywords - Domaini

    Transit peptide

    Phylogenomic databases

    eggNOGiCOG1232.
    HOGENOMiHOG000269479.
    KOiK00231.
    OMAiHITSKEE.

    Family and domain databases

    Gene3Di3.90.660.20. 1 hit.
    InterProiIPR002937. Amino_oxidase.
    IPR027418. PPOX_C.
    IPR004572. Protoporphyrinogen_oxidase.
    [Graphical view]
    PfamiPF01593. Amino_oxidase. 1 hit.
    [Graphical view]
    TIGRFAMsiTIGR00562. proto_IX_ox. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    Q9AR38-1 [UniParc]FASTAAdd to Basket

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    MAAAAAAMAT ATSATAAPPL RIRDAARRTR RRGHVRCAVA SGAAEAPAAP    50
    GARVSADCVV VGGGISGLCT AQALATKHGV GDVLVTEARA RPGGNITTAE 100
    RAGEGYLWEE GPNSFQPSDP VLTMAVDSGL KDDLVFGDPN APRFVLWEGK 150
    LRPVPSKPGD LPFFDLMSIP GKLRAGLGAL GVRAPPPGRE ESVEDFVRRN 200
    LGAEVFERLI EPFCSGVYAG DPSKLSMKAA FGKVWRLEDT GGSIIGGTIK 250
    TIQERGKNPK PPRDPRLPTP KGQTVASFRK GLTMLPDAIT SRLGSKVKLS 300
    WKLTSITKSD NKGYALVYET PEGVVSVQAK TVVMTIPSYV ASDILRPLSS 350
    DAADALSIFY YPPVAAVTVS YPKEAIRKEC LIDGELQGFG QLHPRSQGVE 400
    TLGTIYSSSL FPNRAPAGRV LLLNYIGGST NTGIVSKTES ELVEAVDRDL 450
    RKMLINPKAV DPLVLGVRVW PQAIPQFLIG HLDHLEAAKS ALGKGGYDGL 500
    FLGGNYVAGV ALGRCVEGAY ESASQISDYL TKYAYK 536
    Length:536
    Mass (Da):56,727
    Last modified:June 1, 2001 - v1
    Checksum:i25D9E3EDD49A97C3
    GO

    Sequence cautioni

    The sequence BAD81569.1 differs from that shown. Reason: Erroneous gene model prediction.

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AB057749 mRNA. Translation: BAB39744.1.
    AB057771 Genomic DNA. Translation: BAB39760.1.
    AP003020 Genomic DNA. Translation: BAD81569.1. Sequence problems.
    AP008207 Genomic DNA. Translation: BAF04691.1.
    RefSeqiNP_001042777.1. NM_001049312.1.
    UniGeneiOs.5439.

    Genome annotation databases

    EnsemblPlantsiOS01T0286600-01; OS01T0286600-01; OS01G0286600.
    GeneIDi4327918.
    KEGGiosa:4327918.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AB057749 mRNA. Translation: BAB39744.1 .
    AB057771 Genomic DNA. Translation: BAB39760.1 .
    AP003020 Genomic DNA. Translation: BAD81569.1 . Sequence problems.
    AP008207 Genomic DNA. Translation: BAF04691.1 .
    RefSeqi NP_001042777.1. NM_001049312.1.
    UniGenei Os.5439.

    3D structure databases

    ProteinModelPortali Q9AR38.
    ModBasei Search...
    MobiDBi Search...

    Proteomic databases

    PRIDEi Q9AR38.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi OS01T0286600-01 ; OS01T0286600-01 ; OS01G0286600 .
    GeneIDi 4327918.
    KEGGi osa:4327918.

    Organism-specific databases

    Gramenei Q9AR38.

    Phylogenomic databases

    eggNOGi COG1232.
    HOGENOMi HOG000269479.
    KOi K00231.
    OMAi HITSKEE.

    Enzyme and pathway databases

    UniPathwayi UPA00251 ; UER00324 .
    UPA00668 .

    Family and domain databases

    Gene3Di 3.90.660.20. 1 hit.
    InterProi IPR002937. Amino_oxidase.
    IPR027418. PPOX_C.
    IPR004572. Protoporphyrinogen_oxidase.
    [Graphical view ]
    Pfami PF01593. Amino_oxidase. 1 hit.
    [Graphical view ]
    TIGRFAMsi TIGR00562. proto_IX_ox. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Characterization of a full length protoporphyrinogen oxidase I cDNA from Oryza sativa L."
      Ichikawa H., Okano E., Sugita T., Shimizu T., Osakabe K., Toki S.
      Submitted (MAR-2001) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA / MRNA].
      Strain: cv. Nipponbare.
      Tissue: Shoot.
    2. "The genome sequence and structure of rice chromosome 1."
      Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y., Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H., Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., Okamoto M.
      , Ando T., Aoki H., Arita K., Hamada M., Harada C., Hijishita S., Honda M., Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito S., Ito T., Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Katagiri S., Kikuta A., Kobayashi N., Kono I., Machita K., Maehara T., Mizuno H., Mizubayashi T., Mukai Y., Nagasaki H., Nakashima M., Nakama Y., Nakamichi Y., Nakamura M., Namiki N., Negishi M., Ohta I., Ono N., Saji S., Sakai K., Shibata M., Shimokawa T., Shomura A., Song J., Takazaki Y., Terasawa K., Tsuji K., Waki K., Yamagata H., Yamane H., Yoshiki S., Yoshihara R., Yukawa K., Zhong H., Iwama H., Endo T., Ito H., Hahn J.H., Kim H.-I., Eun M.-Y., Yano M., Jiang J., Gojobori T.
      Nature 420:312-316(2002) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Nipponbare.
    3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Nipponbare.
    4. "The rice annotation project database (RAP-DB): 2008 update."
      The rice annotation project (RAP)
      Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
      Cited for: GENOME REANNOTATION.
      Strain: cv. Nipponbare.

    Entry informationi

    Entry nameiPPOC_ORYSJ
    AccessioniPrimary (citable) accession number: Q9AR38
    Secondary accession number(s): Q5NAD7
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: May 26, 2009
    Last sequence update: June 1, 2001
    Last modified: October 1, 2014
    This is version 77 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programPlant Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. PATHWAY comments
      Index of metabolic and biosynthesis pathways
    2. Oryza sativa (rice)
      Index of Oryza sativa entries and their corresponding gene designations
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3