Xanthan lyase - Bacillus sp. (strain GL1)

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Unreviewed, UniProtKB/TrEMBL Q9AQS0 (Q9AQS0_BACGL)

Last modified April 14, 2009. Version 33. History...

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Names and origin · Protein attributes · Ontologies · Sequences · References · Cross-references · Entry information

Names and origin

Protein names

Submitted name:
Xanthan lyase EMBL BAB21059.1

Gene names

Name:

xly EMBL BAB21059.1

Organism

Bacillus sp. (strain GL1) EMBL BAB21059.1

Taxonomic identifier

Taxonomic lineage

Bacteria › Firmicutes › Bacillales › Bacillaceae › Bacillus

Protein attributes

Sequence length	930 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Evidence at protein level.

Ontologies

Keywords
Molecular function	Lyase
Gene Ontology (GO)
Biological process	carbohydrate metabolic process Inferred from electronic annotation. Source: InterPro
Cellular component	extracellular region Inferred from electronic annotation. Source: InterPro
Molecular function	carbohydrate binding Inferred from electronic annotation. Source: InterPro carbon-oxygen lyase activity, acting on polysaccharides Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

Sequence

Length

Mass (Da)

Tools

Q9AQS0-1 [UniParc].

Last modified June 1, 2001. Version 1.
Checksum: 5E8B69D3E94019C4
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930

99,313

        10         20         30         40         50         60 
MLSGILIAAL LMTLWGGWQP DIAHASDEFD ALRIKWATLL TGGPALDPAD SDIAARTDKL 

        70         80         90        100        110        120 
AQDANDYWED MDLSSSRTYI WYALRGNGTS DNVNAVYERL RTMALAATTV GSSLYGNADL 

       130        140        150        160        170        180 
KEDILDALDW LYVNSYNSTR SRSAYNWWHW QLGIPMSLND IAVLLYDDIS AARMATYMDT 

       190        200        210        220        230        240 
IDYFTPSIGL TGANRAWQAI VVGVRAVIVK DAVKLAAARN GLSGTGIFPY ATGGDGFYAD 

       250        260        270        280        290        300 
GSFVQHTTFA YTGGYGSSVL ETTANLMYLL SGSTWSVSDP NQSNVWQWIY EAYRPLLYKG 

       310        320        330        340        350        360 
AMMDMVRGRE ISRSYAQDHA VGHGIVASIV RLAQFAPAPH AAAFKQIAKR VIQEDTFSSF 

       370        380        390        400        410        420 
YGDVSTDTIR LAKAIVDDPS IAPAAAPNLY KQYAAMDRAV LQRPGFALGL ALYSTRISSY 

       430        440        450        460        470        480 
ESINSENGRG WYTGAGATYL YNQDLAQYSE DYWPTVDAYR IPGTTVASGT PIASGTGTSS 

       490        500        510        520        530        540 
WTGGVSLAGQ YGASGMDLSY GAYNLSARKS WFMFDDEIVA LGSGISSTAG IPIETVVDNR 

       550        560        570        580        590        600 
KLNGAGDNAW TANGAALSTG LGVAQTLTGV NWVHLAGNTA DGSDIGYYFP GGATLQTKRE 

       610        620        630        640        650        660 
ARTGTWKQIN NRPATPSTAV TRNYETMWID HGTNPSGASY GYVLLPNKTS AQVGAYAADP 

       670        680        690        700        710        720 
AIEIVVNTSG VQSVKEKTLG LVGANFWTDT TQTADLITSN KKASVMTREI ADERLEASVS 

       730        740        750        760        770        780 
DPTQANNGTI AIELARSAEG YSADPGITVT QLAPTIKFTV NVNGAKGKSF HASFQLGEDT 

       790        800        810        820        830        840 
SGPVDPGEPE LPSVIVDNAD SAGVTRTGTW KTASTQTDRY GANYLHDDNA GKGTKSVTFT 

       850        860        870        880        890        900 
PNLPIAGSYE VYLMWPAHFN REDAVQVDVG HASGTTRTAV DQRSGGGVWH SIGTYEFLAG 

       910        920        930 
SGGSVTIRND ALGSPDGYVV ADAVKFVAVG

References

[1]	"Polysaccharide lyase: molecular cloning, sequencing, and overexpression of the xanthan lyase gene of Bacillus sp. strain GL1." Hashimoto W., Miki H., Tsuchiya N., Nankai H., Murata K. Appl. Environ. Microbiol. 67:713-720(2001) [PubMed: 11157235] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: GL1 EMBL BAB21059.1.
[2]	"Crystal structure of Bacillus sp. GL1 xanthan lyase, which acts on the side chains of xanthan." Hashimoto W., Nankai H., Mikami B., Murata K. J. Biol. Chem. 278:7663-7673(2003) [PubMed: 12475987] [Abstract] Cited for: X-RAY CRYSTALLOGRAPHY (2.3 ANGSTROMS) OF 26-777.
+	Additional computationally mapped references.

Cross-references

Sequence databases

AB037178 Genomic DNA. Translation: BAB21059.1.

3D structure databases

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
1J0M	X-ray	2.30	A	26-777	[»]
1J0N	X-ray	2.40	A	26-777	[»]
1X1H	X-ray	2.30	A	26-777	[»]
1X1I	X-ray	1.80	A	26-777	[»]
1X1J	X-ray	2.10	A	26-777	[»]
2E22	X-ray	2.40	A	26-777	[»]
2E24	X-ray	2.15	A	26-777	[»]

ModBase

Protein family/group databases

CAZy

PL8. Polysaccharide Lyase Family 8.

Family and domain databases

InterPro

IPR014718. Glyco_hydro-type_carb-bd_sub.
IPR012970. Lyase_8_alpha_N.
IPR004103. Lyase_8_C.
IPR003159. Lyase_8_central.
IPR012329. Lyase_8_N.
[Graphical view]

Gene3D

G3DSA:2.70.98.10. Glyco_hydro_42_D5. 1 hit.
G3DSA:2.60.220.10. Lyase_8_C. 1 hit.
G3DSA:1.50.10.100. Lyase_8_N. 1 hit.

Pfam

PF02278. Lyase_8. 1 hit.
PF02884. Lyase_8_C. 1 hit.
PF08124. Lyase_8_N. 1 hit.
[Graphical view]

ProtoNet

Entry information

Entry name

Q9AQS0_BACGL

Accession

Primary (citable) accession number: Q9AQS0

Entry history

Integrated into UniProtKB/TrEMBL:	June 1, 2001
Last sequence update:	June 1, 2001
Last modified:	April 14, 2009
This is version 33 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)

Names and origin · Protein attributes · Ontologies · Sequences · References · Cross-references · Entry information