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Unreviewed, UniProtKB/TrEMBL Q9AN16 (Q9AN16_BRAJA)

Last modified June 16, 2009. Version 55. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequences · References · Cross-references · Entry information

Names and origin

Protein namesSubmitted name:
    Blr1993 protein EMBL BAC47258.1
Submitted name:
    ID636 EMBL AAG60962.1
Gene names
Name: id636 EMBL AAG60962.1
Ordered Locus Names: blr1993
OrganismBradyrhizobium japonicum [Complete proteome] [HAMAP] EMBL AAG60962.1
Taxonomic identifier375 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeBradyrhizobium

Protein attributes

Sequence length510 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is not processed.
Protein existenceInferred from homology.

General annotation (Comments)

Sequence similarities

Belongs to the glycosyl hydrolase 28 family. RuleBase RU000404V2

Ontologies

Keywords
   Biological processCell wall biogenesis/degradation RuleBase RU000404V2
   Molecular functionGlycosidase RuleBase RU000404V2
Hydrolase
   Technical termComplete proteome
Gene Ontology (GO)
   Biological processcarbohydrate metabolic process

Inferred from electronic annotation. Source: InterPro

   Molecular functionpolygalacturonase activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
Q9AN16-1 [UniParc].

Last modified June 1, 2001. Version 1.
Checksum: E4565B4612E87764

FASTA51055,376
        10         20         30         40         50         60 
MSRLTLRSCW IFVLSQNASS FSRIGKVLLR DLKSRRLLRR INVILCAPVT HAATRSSQRS 

        70         80         90        100        110        120 
IPEKARDNDA RDKSTSRSMT KRFRNWALLS ILASMVVGPA AKAQDRRTIA EPVAPDTVCD 

       130        140        150        160        170        180 
RPVPSGKNDT VSLQEAIEHC PDGAAVYLGR GEFHSGPLEM KSGVTLWVGR GATLIAIPEP 

       190        200        210        220        230        240 
AAYDKGLGQC GRIAEKGDGC RPFISFSKTR GGGIYGEGII DGQGGALIGG GAETWWQLAR 

       250        260        270        280        290        300 
RAQAQGGNQN APRLIQVDHA QDITFSGVTL RNAANFHVAM NRVEGATFWA LTIDSPADAR 

       310        320        330        340        350        360 
NTDGIDLGAS QDVTITHSWI RTGDDNVAIK AGDNGSSSHI SIIDNYFGWG HGMSIGSEVN 

       370        380        390        400        410        420 
SGARDILVRN LTLDGTTSGL RIKSDVGRGG LVENVTYEYV CLRGNRWPLA FDAKYDPRAQ 

       430        440        450        460        470        480 
GTRIPVYRQI VLRHVHGDTG VLLMRGIDER HALDVTLEDV RFANSATWQL EHANVSANHS 

       490        500        510 
DVWPPLPGRA TQPPLRGSEV CSKAFRDGNR 

« Hide

References

« Hide 'large scale' references
[1]"Potential symbiosis-specific genes uncovered by sequencing a 410-kb DNA region of the Bradyrhizobium japonicum chromosome."
Goettfert M., Roethlisberger S., Kuendig C., Beck C., Marty R., Hennecke H.
J. Bacteriol. 183:1405-1412(2001) [PubMed: 11157954] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: 110spc4 EMBL AAG60962.1.
[2]"Complete genomic sequence of nitrogen-fixing symbiotic bacterium Bradyrhizobium japonicum USDA110."
Kaneko T., Nakamura Y., Sato S., Minamisawa K., Uchiumi T., Sasamoto S., Watanabe A., Idesawa K., Iriguchi M., Kawashima K., Kohara M., Matsumoto M., Shimpo S., Tsuruoka H., Wada T., Yamada M., Tabata S.
DNA Res. 9:189-197(2002) [PubMed: 12597275] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: USDA 110.

Cross-references

Sequence databases

AF322013 Genomic DNA. Translation: AAG60962.1.
BA000040 Genomic DNA. Translation: BAC47258.1.
RefSeqNP_768633.1.

3D structure databases

HSSPHSSP built from PDB template 1BHE based on UniProtKB P26509.
ModBaseSearch...

Protein family/group databases

CAZyGH28. Glycoside Hydrolase Family 28.

Genome annotation databases

GeneID1055086.
GenomeReviewsGene locus blr1993 in contig BA000040_GR.
KEGGbja:blr1993.
NMPDRfig|224911.1.peg.1993.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMQ9AN16.
OMAQ9AN16. NACKNGS.

Enzyme and pathway databases

BioCycBJAP224911:BLR1993-MON.

Family and domain databases

InterProIPR000743. Glyco_hydro_28.
IPR006626. PbH1.
IPR012334. Pectin_lyas_fold.
[Graphical view]
Gene3DG3DSA:2.160.20.10. Pectin_lyas_fold. 1 hit.
PfamPF00295. Glyco_hydro_28. 1 hit.
[Graphical view]
SMARTSM00710. PbH1. 5 hits.
[Graphical view]
PROSITEPS00502. POLYGALACTURONASE. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ9AN16_BRAJA
AccessionPrimary (citable) accession number: Q9AN16
Secondary accession number(s): Q79UH0
Entry history
Integrated into UniProtKB/TrEMBL: June 1, 2001
Last sequence update: June 1, 2001
Last modified: June 16, 2009
This is version 55 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequences · References · Cross-references · Entry information