Chitinase A precursor - Vibrio harveyi

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Unreviewed, UniProtKB/TrEMBL Q9AMP1 (Q9AMP1_VIBHA)

Last modified June 16, 2009. Version 39. History...

Clusters with 100%, 90%, 50% identity |

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Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information

Names and origin

Protein names

Submitted name:
Chitinase A EMBL AAK11576.1

Gene names

Name:

chiA EMBL AAK11576.1

Organism

Vibrio harveyi EMBL AAK11576.1

Taxonomic identifier

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Vibrionales › Vibrionaceae › Vibrio

Protein attributes

Sequence length	850 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is further processed into a mature form.
Protein existence	Evidence at protein level.

General annotation (Comments)

Sequence similarities

Belongs to the glycosyl hydrolase 18 family. RuleBase RU004453V0

Ontologies

Keywords
Domain	Signal
Molecular function	Glycosidase RuleBase RU000489V1 Hydrolase
Gene Ontology (GO)
Biological process	chitin catabolic process Inferred from electronic annotation. Source: InterPro
Cellular component	extracellular region Inferred from electronic annotation. Source: InterPro
Molecular function	carbohydrate binding Inferred from electronic annotation. Source: InterPro cation binding Inferred from electronic annotation. Source: InterPro chitinase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

Feature key

Position(s)

Length

Description

Graphical view

Feature identifier

Molecule processing

Signal peptide

21

Potential EMBL AAK11576.1

Chain

829

Potential EMBL AAK11576.1

PRO_5000058799

Sequences

Sequence

Length

Mass (Da)

Tools

Q9AMP1-1 [UniParc].

Last modified June 1, 2001. Version 1.
Checksum: 5C960448826A8DEB
Show »

850

90,249

        10         20         30         40         50         60 
MIRFNLCAAG VALALSGAAN AAPTAPSIDM YGSNNLQFSK IELAMETTSG YNDMVKYHEL 

        70         80         90        100        110        120 
AKIKVKFNQW SGTSGDTYNV YFDGVKVATG AITGSQTTAS FEYGQGGLYQ MEIEACDATG 

       130        140        150        160        170        180 
CSKSAPVEIT IADTDGSHLK PLTMNVDPNN KSYNTDPSIV MGTYFVEWGI YGRDYTVDNM 

       190        200        210        220        230        240 
PVDNLTHILY GFIPICGPNE SVKSVGGNSF NALQTACRGV NDYEVVIHDP WAAYQKSFPQ 

       250        260        270        280        290        300 
AGHEYSTPIK GNYAMLMALK QRNPDLKIIP SIGGWTLSDP FYDFVDKKNR DTFVASVKKF 

       310        320        330        340        350        360 
LKTWKFYDGV DIDWEFPGGG GAAADKGDPV NDGPAYIALM RELRVMLDEL EAETGRTYEL 

       370        380        390        400        410        420 
TSAIGVGYDK IEDVDYADAV QYMDYIFAMT YDFYGGWNNV PGHQTALYCG SFMRPGQCDG 

       430        440        450        460        470        480 
GGVDENGEPY KGPAYTADNG IQLLLAQGVP ANKLVLGTAM YGRGWEGVTP DTLTDPNDPM 

       490        500        510        520        530        540 
TGTATGKLKG STAQGVWEDG VIDYKGIKSF MLGANNTGIN GFEYGYDAQA EAPWVWNRST 

       550        560        570        580        590        600 
GELITFDDHR SVLAKGNYAK SLGLAGLFSW EIDADNGDIL NAMHEGMAGG VVTPPNRKPT 

       610        620        630        640        650        660 
AAAGADQAVT GPASVVLDGS NSTDSDGTIA SYAWEQVSGT AVVLSGANTA TASFDAVEVA 

       670        680        690        700        710        720 
AEEQLTFKLT VTDNEGATAS DLVVVTVKPA GVIDPPNTAP VAQVSAPATA SAGDVVVIDA 

       730        740        750        760        770        780 
SASSDADNDT LTFDWTLPQG LNATVNGAKV TFTAAEYPQD TSLSFTVSVS DGQAVSTASA 

       790        800        810        820        830        840 
TVVVAKHSTG GGTCTNAWDA TAVYTGGDQV TYAGKTWEAK WWDSRVKILA SLANGVFGKK 

       850 
LVHLTVTKHC

References

[1]	"Isolation and Characterization of the gene encoding the precursor of chitinase chiA from Vibrio carchariae." Suginta W., Rigden D.J., Estibeiro P., Duncan R.R., Ketudat-Cairns J., Fothergill-Gilmore L.A. Submitted (NOV-2000) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.

Cross-references

Sequence databases

AF323180 Genomic DNA. Translation: AAK11576.1.

3D structure databases

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
3B8S	X-ray	2.00	A/B	22-597	[»]
3B9A	X-ray	1.80	A	22-597	[»]
3B9D	X-ray	1.72	A	22-597	[»]
3B9E	X-ray	1.70	A	22-597	[»]

ModBase

Protein family/group databases

CAZy

CBM5. Carbohydrate-Binding Module Family 5.
GH18. Glycoside Hydrolase Family 18.

Family and domain databases

InterPro

IPR003610. CBM_5_12.
IPR011583. Chitinase_II.
IPR013540. ChitinaseA_N.
IPR001223. Glyco_hydro18cat.
IPR001579. Glyco_hydro_18_chit_AS.
IPR013781. Glyco_hydro_sg_catalytic.
IPR013783. Ig-like_fold.
IPR000601. PKD.
[Graphical view]

Gene3D

G3DSA:3.20.20.80. Glyco_hydro_cat. 1 hit.
G3DSA:2.60.40.10. Ig-like_fold. 1 hit.

Pfam

PF02839. CBM_5_12. 1 hit.
PF08329. ChitinaseA_N. 1 hit.
PF00704. Glyco_hydro_18. 1 hit.
[Graphical view]

ProDom

PD000471. Chitinase_II. 1 hit.
[Graphical view] [Entries sharing at least one domain]

SMART

SM00636. Glyco_18. 1 hit.
SM00089. PKD. 3 hits.
[Graphical view]

PROSITE

PS01095. CHITINASE_18. 1 hit.
[Graphical view]

ProtoNet

Entry information

Entry name

Q9AMP1_VIBHA

Accession

Primary (citable) accession number: Q9AMP1

Entry history

Integrated into UniProtKB/TrEMBL:	June 1, 2001
Last sequence update:	June 1, 2001
Last modified:	June 16, 2009
This is version 39 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)

Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information