Unreviewed, UniProtKB/TrEMBL Q9AF09 (Q9AF09_9GAMM)

Names and origin

Protein names	Submitted name:     Rhamnogalacturonan lyase EMBL AAK20911.1
Organism	Cellvibrio japonicus EMBL AAK20911.1
Taxonomic identifier	155077 [NCBI]
Taxonomic lineage	Bacteria › Proteobacteria › Gammaproteobacteria › Pseudomonadales › Pseudomonadaceae › Cellvibrio

Protein attributes

Sequence length	881 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Predicted.

General annotation (Comments)

Sequence similarities

Contains 1 fibronectin type-III domain. RuleBase RU000718V1

Ontologies

Keywords
Molecular function	Lyase
Gene Ontology (GO)
Biological process	carbohydrate metabolic process Inferred from electronic annotation. Source: InterPro
Molecular function	hydrolase activity, hydrolyzing O-glycosyl compounds Inferred from electronic annotation. Source: InterPro lyase activity Inferred from electronic annotation. Source: UniProtKB-KW polysaccharide binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q9AF09-1 [UniParc]. Last modified June 1, 2001. Version 1. Checksum: E8792769751FEEC7	FASTA	881	93,964
	10 20 30 40 50 60 MKITMQGKEP SRSPLWRPQN RSLFHRLCKQ SWRWGVAFCW RPLPSPRARR EYLDRGVVAL 70 80 90 100 110 120 PSGSGIYIGW RMLGDDPANI GFHVYRNGTR ITSSPITNST NYFDASGSSS AAYTVRPVVN 130 140 150 160 170 180 GVEQAANPAK ATWSNPYWLV NLNRPAGGTT PSGEAYSYSP NDLSVGDLDG DGQYDIIVKW 190 200 210 220 230 240 EPSNAKDNSQ SGYTGNVYVD AYRLNGSQLW RIDLGRNIRA GAHYTQFIVY DLDGDGKAEV 250 260 270 280 290 300 AMKTAPGTRD AAGNVLGGSN ANYRLRNASG YVLSGAEYLT IFNGQTGVAM ATTDYVPARG 310 320 330 340 350 360 TVSSWGDNYG NRVDRFLAGV AYLDGQRPSL VMARGYYTRA VVVAWDWRNG SLSRRWTFDS 370 380 390 400 410 420 NSGGNSAAAG QGAHSLTIGD VDQDGRDEIV YGAATINDNG TLLYSTGLGH GDALHLGDFN 430 440 450 460 470 480 PNRPGLEVFM VHESPSSYGQ HGIEMHDART GAIVWSVQGG GDIGRGVTMD VDPRYPGNES 490 500 510 520 530 540 WASTGGLYSA TGQQITTSKP ASINFGVWWD ADLLREQLNN TMIDKWNYSN NTSSRLLTAY 550 560 570 580 590 600 NYGAASNNGT KATPGLSADL FGDWREEVIW RHDNNSQLLI FSTTAVTTHK LRTLMHDTQY 610 620 630 640 650 660 RTAIAWQNVA YNQPPHPSFF LGDGMATPAA PDIYFVGTNP NGGSTGSSSS SSSSSVAAPQ 670 680 690 700 710 720 VNLSGVAGNG QVSLSWTVNG SINGIEIYRD TDADPAGRTR IASLSASTRS YTATGLTNGQ 730 740 750 760 770 780 PYWFWVKYTG ADGTAYNSNA FNATPVGAAT SSSSSVASSS SSSSSSSVAS SAVSSSSAAS 790 800 810 820 830 840 GGSGSCSYVI TNNWGSGFTG AIRITNRGSS AINGWNVSWT YSGNTRISNS WNATVSGSNP 850 860 870 880 YSAANLGWNA TIQPGQTVEF GFQGTYSGST ETPVISGSVC N

References

[1]

"A new family of rhamnogalacturonan lyases contains an enzyme that binds to cellulose." McKie V.A., Vincken J.P., Voragen A.G., van den Broek L.A., Stimson E., Gilbert H.J. Biochem. J. 355:167-177(2001) [PubMed: 11256961] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: ATCC 55703 EMBL AAK20911.1.

Cross-references

Sequence databases
EMBLGenBankDDBJ	AY026755 Genomic DNA. Translation: AAK20911.1.
3D structure databases
HSSP	HSSP built from PDB template 1XBD based on UniProtKB P54865.
ModBase	Search...
Protein family/group databases
CAZy	CBM2. Carbohydrate-Binding Module Family 2. PL11. Polysaccharide Lyase Family 11.
Family and domain databases
InterPro	IPR001919. CBD_bac. IPR012291. CBD_carb_bd. IPR018366. CBM2_CS. IPR013517. FG-GAP. IPR003961. FN_III. [Graphical view]
Gene3D	G3DSA:2.60.40.290. CBD_carb_bd. 1 hit.
Pfam	PF00553. CBM_2. 1 hit. PF01839. FG-GAP. 3 hits. PF00041. fn3. 1 hit. [Graphical view]
SMART	SM00637. CBD_II. 1 hit. SM00060. FN3. 1 hit. [Graphical view]
PROSITE	PS51173. CBM2. 1 hit. PS00561. CBM2_A. 1 hit. PS50853. FN3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q9AF09_9GAMM

Accession

Primary (citable) accession number: Q9AF09

Entry history

Integrated into UniProtKB/TrEMBL:	June 1, 2001
Last sequence update:	June 1, 2001
Last modified:	April 14, 2009
This is version 34 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)