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Protein
Submitted name:

RNA polymerase sigma-70 factor, ECF subfamily

Gene

CC_1329

Organism
Caulobacter crescentus (strain ATCC 19089 / CB15)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. DNA binding Source: UniProtKB-KW
  2. sequence-specific DNA binding transcription factor activity Source: InterPro
  3. sigma factor activity Source: UniProtKB-KW

GO - Biological processi

  1. DNA-templated transcription, initiation Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Sigma factorSAAS annotation

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-bindingSAAS annotation

Enzyme and pathway databases

BioCyciCAULO:CC1329-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
RNA polymerase sigma-70 factor, ECF subfamilyImported
Gene namesi
Ordered Locus Names:CC_1329Imported
OrganismiCaulobacter crescentus (strain ATCC 19089 / CB15)Imported
Taxonomic identifieri190650 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaCaulobacteralesCaulobacteraceaeCaulobacter
ProteomesiUP000001816 Componenti: Chromosome

Structurei

3D structure databases

ProteinModelPortaliQ9A8M4.
SMRiQ9A8M4. Positions 124-196.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000152991.
KOiK03088.
OMAiVCDLTTE.
OrthoDBiEOG61S2Z2.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
1.25.40.10. 2 hits.
InterProiIPR011008. Dimeric_a/b-barrel.
IPR014284. RNA_pol_sigma-70_dom.
IPR007627. RNA_pol_sigma70_r2.
IPR013249. RNA_pol_sigma70_r4_t2.
IPR013325. RNA_pol_sigma_r2.
IPR013324. RNA_pol_sigma_r3_r4.
IPR011990. TPR-like_helical_dom.
IPR011991. WHTH_DNA-bd_dom.
IPR005545. YCII.
[Graphical view]
PfamiPF04542. Sigma70_r2. 1 hit.
PF08281. Sigma70_r4_2. 1 hit.
PF03795. YCII. 1 hit.
[Graphical view]
SUPFAMiSSF54909. SSF54909. 1 hit.
SSF88659. SSF88659. 1 hit.
SSF88946. SSF88946. 1 hit.
TIGRFAMsiTIGR02937. sigma70-ECF. 1 hit.

Sequencei

Sequence statusi: Complete.

Q9A8M4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLYAILCYNH EDVVCAWSKE EDAAVMEKLG VVQQRLAEEG RLGPVARLMP
60 70 80 90 100
TTAATTPAQG SRTAPGAGRS LRRDQRATAR LLRRRLRVPR WRAAGRPGSR
110 120 130 140 150
QGQSRRLLRD PSDRHVPARS RRRVTDFGWI EGAIAAARPQ AMAALLRYFR
160 170 180 190 200
DMDAAEEAFQ DACLRALKAW PKNGPPRDPT AWLIMVGRNA AIDAVRKTSR
210 220 230 240 250
NTVLPPEELL SDLEDAEAEA AERLDSSHYR DDVLRLLFIC CHPDLPATQQ
260 270 280 290 300
IALALRIVSG LSVREIARAF LVSEAAMEQR ITRAKARIGV GGAPFEAPGP
310 320 330 340 350
IERAERFAAV AAMIYLVFTE GYSASGKALE AKGGLCDEAI RLARLLLRLF
360 370 380 390 400
PSEPEMMGLT ALLLLQHSRS DARFGDDGTA ILLDDQDRSL WSRRMIDEGL
410 420 430 440 450
ALIDKAMLKK APGPYQVQAA IAALHARAAR AEDIDWAGVD RLYATLEIMQ
460 470 480 490 500
PSPVVTLNRA VATAKVWGPD AALEMIEPLG ARLDAYFHYH GARGAFLMQA
510 520 530
GRTVEARKAF DRAIALAGTA AQAANIRQYL DTMATRV
Length:537
Mass (Da):59,022
Last modified:June 1, 2001 - v1
Checksum:i750A2D2F566CABD6
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE005673 Genomic DNA. Translation: AAK23310.1.
PIRiB87414.
RefSeqiNP_420142.1. NC_002696.2.

Genome annotation databases

EnsemblBacteriaiAAK23310; AAK23310; CC_1329.
GeneIDi941652.
KEGGiccr:CC_1329.
PATRICi21299672. VBICauCre124313_1358.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE005673 Genomic DNA. Translation: AAK23310.1.
PIRiB87414.
RefSeqiNP_420142.1. NC_002696.2.

3D structure databases

ProteinModelPortaliQ9A8M4.
SMRiQ9A8M4. Positions 124-196.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAK23310; AAK23310; CC_1329.
GeneIDi941652.
KEGGiccr:CC_1329.
PATRICi21299672. VBICauCre124313_1358.

Phylogenomic databases

HOGENOMiHOG000152991.
KOiK03088.
OMAiVCDLTTE.
OrthoDBiEOG61S2Z2.

Enzyme and pathway databases

BioCyciCAULO:CC1329-MONOMER.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
1.25.40.10. 2 hits.
InterProiIPR011008. Dimeric_a/b-barrel.
IPR014284. RNA_pol_sigma-70_dom.
IPR007627. RNA_pol_sigma70_r2.
IPR013249. RNA_pol_sigma70_r4_t2.
IPR013325. RNA_pol_sigma_r2.
IPR013324. RNA_pol_sigma_r3_r4.
IPR011990. TPR-like_helical_dom.
IPR011991. WHTH_DNA-bd_dom.
IPR005545. YCII.
[Graphical view]
PfamiPF04542. Sigma70_r2. 1 hit.
PF08281. Sigma70_r4_2. 1 hit.
PF03795. YCII. 1 hit.
[Graphical view]
SUPFAMiSSF54909. SSF54909. 1 hit.
SSF88659. SSF88659. 1 hit.
SSF88946. SSF88946. 1 hit.
TIGRFAMsiTIGR02937. sigma70-ECF. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 19089 / CB15Imported.

Entry informationi

Entry nameiQ9A8M4_CAUCR
AccessioniPrimary (citable) accession number: Q9A8M4
Entry historyi
Integrated into UniProtKB/TrEMBL: June 1, 2001
Last sequence update: June 1, 2001
Last modified: April 29, 2015
This is version 93 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.