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Q9A8M4

- Q9A8M4_CAUCR

UniProt

Q9A8M4 - Q9A8M4_CAUCR

Protein
Submitted name:

RNA polymerase sigma-70 factor, ECF subfamily

Gene

CC_1329

Organism
Caulobacter crescentus (strain ATCC 19089 / CB15)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 88 (01 Oct 2014)
      Sequence version 1 (01 Jun 2001)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. DNA binding Source: UniProtKB-KW
    2. sequence-specific DNA binding transcription factor activity Source: InterPro
    3. sigma factor activity Source: UniProtKB-KW

    GO - Biological processi

    1. DNA-templated transcription, initiation Source: InterPro

    Keywords - Molecular functioni

    Sigma factorSAAS annotation

    Keywords - Biological processi

    Transcription, Transcription regulation

    Keywords - Ligandi

    DNA-bindingSAAS annotation

    Enzyme and pathway databases

    BioCyciCAULO:CC1329-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    RNA polymerase sigma-70 factor, ECF subfamilyImported
    Gene namesi
    Ordered Locus Names:CC_1329Imported
    OrganismiCaulobacter crescentus (strain ATCC 19089 / CB15)Imported
    Taxonomic identifieri190650 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaCaulobacteralesCaulobacteraceaeCaulobacter
    ProteomesiUP000001816: Chromosome

    Structurei

    3D structure databases

    ProteinModelPortaliQ9A8M4.
    SMRiQ9A8M4. Positions 124-196.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    HOGENOMiHOG000152991.
    KOiK03088.
    OMAiYFHYFGA.
    OrthoDBiEOG61S2Z2.

    Family and domain databases

    Gene3Di1.10.10.10. 1 hit.
    1.25.40.10. 2 hits.
    InterProiIPR011008. Dimeric_a/b-barrel.
    IPR014284. RNA_pol_sigma-70_dom.
    IPR007627. RNA_pol_sigma70_r2.
    IPR013249. RNA_pol_sigma70_r4_t2.
    IPR013325. RNA_pol_sigma_r2.
    IPR013324. RNA_pol_sigma_r3_r4.
    IPR011990. TPR-like_helical.
    IPR011991. WHTH_DNA-bd_dom.
    IPR005545. YCII.
    [Graphical view]
    PfamiPF04542. Sigma70_r2. 1 hit.
    PF08281. Sigma70_r4_2. 1 hit.
    PF03795. YCII. 1 hit.
    [Graphical view]
    SUPFAMiSSF54909. SSF54909. 1 hit.
    SSF88659. SSF88659. 1 hit.
    SSF88946. SSF88946. 1 hit.
    TIGRFAMsiTIGR02937. sigma70-ECF. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Q9A8M4-1 [UniParc]FASTAAdd to Basket

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    MLYAILCYNH EDVVCAWSKE EDAAVMEKLG VVQQRLAEEG RLGPVARLMP    50
    TTAATTPAQG SRTAPGAGRS LRRDQRATAR LLRRRLRVPR WRAAGRPGSR 100
    QGQSRRLLRD PSDRHVPARS RRRVTDFGWI EGAIAAARPQ AMAALLRYFR 150
    DMDAAEEAFQ DACLRALKAW PKNGPPRDPT AWLIMVGRNA AIDAVRKTSR 200
    NTVLPPEELL SDLEDAEAEA AERLDSSHYR DDVLRLLFIC CHPDLPATQQ 250
    IALALRIVSG LSVREIARAF LVSEAAMEQR ITRAKARIGV GGAPFEAPGP 300
    IERAERFAAV AAMIYLVFTE GYSASGKALE AKGGLCDEAI RLARLLLRLF 350
    PSEPEMMGLT ALLLLQHSRS DARFGDDGTA ILLDDQDRSL WSRRMIDEGL 400
    ALIDKAMLKK APGPYQVQAA IAALHARAAR AEDIDWAGVD RLYATLEIMQ 450
    PSPVVTLNRA VATAKVWGPD AALEMIEPLG ARLDAYFHYH GARGAFLMQA 500
    GRTVEARKAF DRAIALAGTA AQAANIRQYL DTMATRV 537
    Length:537
    Mass (Da):59,022
    Last modified:June 1, 2001 - v1
    Checksum:i750A2D2F566CABD6
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE005673 Genomic DNA. Translation: AAK23310.1.
    PIRiB87414.
    RefSeqiNP_420142.1. NC_002696.2.
    WP_010919206.1. NC_002696.2.

    Genome annotation databases

    EnsemblBacteriaiAAK23310; AAK23310; CC_1329.
    GeneIDi941652.
    KEGGiccr:CC_1329.
    PATRICi21299672. VBICauCre124313_1358.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE005673 Genomic DNA. Translation: AAK23310.1 .
    PIRi B87414.
    RefSeqi NP_420142.1. NC_002696.2.
    WP_010919206.1. NC_002696.2.

    3D structure databases

    ProteinModelPortali Q9A8M4.
    SMRi Q9A8M4. Positions 124-196.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAK23310 ; AAK23310 ; CC_1329 .
    GeneIDi 941652.
    KEGGi ccr:CC_1329.
    PATRICi 21299672. VBICauCre124313_1358.

    Phylogenomic databases

    HOGENOMi HOG000152991.
    KOi K03088.
    OMAi YFHYFGA.
    OrthoDBi EOG61S2Z2.

    Enzyme and pathway databases

    BioCyci CAULO:CC1329-MONOMER.

    Family and domain databases

    Gene3Di 1.10.10.10. 1 hit.
    1.25.40.10. 2 hits.
    InterProi IPR011008. Dimeric_a/b-barrel.
    IPR014284. RNA_pol_sigma-70_dom.
    IPR007627. RNA_pol_sigma70_r2.
    IPR013249. RNA_pol_sigma70_r4_t2.
    IPR013325. RNA_pol_sigma_r2.
    IPR013324. RNA_pol_sigma_r3_r4.
    IPR011990. TPR-like_helical.
    IPR011991. WHTH_DNA-bd_dom.
    IPR005545. YCII.
    [Graphical view ]
    Pfami PF04542. Sigma70_r2. 1 hit.
    PF08281. Sigma70_r4_2. 1 hit.
    PF03795. YCII. 1 hit.
    [Graphical view ]
    SUPFAMi SSF54909. SSF54909. 1 hit.
    SSF88659. SSF88659. 1 hit.
    SSF88946. SSF88946. 1 hit.
    TIGRFAMsi TIGR02937. sigma70-ECF. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 19089 / CB15Imported.

    Entry informationi

    Entry nameiQ9A8M4_CAUCR
    AccessioniPrimary (citable) accession number: Q9A8M4
    Entry historyi
    Integrated into UniProtKB/TrEMBL: June 1, 2001
    Last sequence update: June 1, 2001
    Last modified: October 1, 2014
    This is version 88 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3