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Protein
Submitted name:

RNA polymerase sigma-70 factor, ECF subfamily

Gene

CC_1329

Organism
Caulobacter vibrioides (strain ATCC 19089 / CB15) (Caulobacter crescentus)
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingSAAS annotation, Sigma factorSAAS annotation
Biological processTranscription, Transcription regulation

Enzyme and pathway databases

BioCyciCAULO:CC1329-MONOMER

Names & Taxonomyi

Protein namesi
Submitted name:
RNA polymerase sigma-70 factor, ECF subfamilyImported
Gene namesi
Ordered Locus Names:CC_1329Imported
OrganismiCaulobacter vibrioides (strain ATCC 19089 / CB15) (Caulobacter crescentus)Imported
Taxonomic identifieri190650 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaCaulobacteralesCaulobacteraceaeCaulobacter
Proteomesi
  • UP000001816 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi190650.CC_1329

Structurei

3D structure databases

ProteinModelPortaliQ9A8M4
SMRiQ9A8M4
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini1 – 56YCIIInterPro annotationAdd BLAST56
Domaini135 – 200Sigma70_r2InterPro annotationAdd BLAST66
Domaini238 – 287Sigma70_r4_2InterPro annotationAdd BLAST50

Sequence similaritiesi

Belongs to the sigma-70 factor family. ECF subfamily.SAAS annotation

Phylogenomic databases

eggNOGiENOG4105CHP Bacteria
COG3795 LUCA
COG4941 LUCA
HOGENOMiHOG000152991
KOiK03088
OMAiVCDLTTE

Family and domain databases

Gene3Di1.10.10.10, 1 hit
InterProiView protein in InterPro
IPR011008 Dimeric_a/b-barrel
IPR014284 RNA_pol_sigma-70_dom
IPR007627 RNA_pol_sigma70_r2
IPR013249 RNA_pol_sigma70_r4_t2
IPR013325 RNA_pol_sigma_r2
IPR013324 RNA_pol_sigma_r3/r4-like
IPR036388 WH-like_DNA-bd_sf
IPR005545 YCII
PfamiView protein in Pfam
PF04542 Sigma70_r2, 1 hit
PF08281 Sigma70_r4_2, 1 hit
PF03795 YCII, 1 hit
SUPFAMiSSF54909 SSF54909, 1 hit
SSF88659 SSF88659, 1 hit
SSF88946 SSF88946, 1 hit
TIGRFAMsiTIGR02937 sigma70-ECF, 1 hit

Sequencei

Sequence statusi: Complete.

Q9A8M4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLYAILCYNH EDVVCAWSKE EDAAVMEKLG VVQQRLAEEG RLGPVARLMP
60 70 80 90 100
TTAATTPAQG SRTAPGAGRS LRRDQRATAR LLRRRLRVPR WRAAGRPGSR
110 120 130 140 150
QGQSRRLLRD PSDRHVPARS RRRVTDFGWI EGAIAAARPQ AMAALLRYFR
160 170 180 190 200
DMDAAEEAFQ DACLRALKAW PKNGPPRDPT AWLIMVGRNA AIDAVRKTSR
210 220 230 240 250
NTVLPPEELL SDLEDAEAEA AERLDSSHYR DDVLRLLFIC CHPDLPATQQ
260 270 280 290 300
IALALRIVSG LSVREIARAF LVSEAAMEQR ITRAKARIGV GGAPFEAPGP
310 320 330 340 350
IERAERFAAV AAMIYLVFTE GYSASGKALE AKGGLCDEAI RLARLLLRLF
360 370 380 390 400
PSEPEMMGLT ALLLLQHSRS DARFGDDGTA ILLDDQDRSL WSRRMIDEGL
410 420 430 440 450
ALIDKAMLKK APGPYQVQAA IAALHARAAR AEDIDWAGVD RLYATLEIMQ
460 470 480 490 500
PSPVVTLNRA VATAKVWGPD AALEMIEPLG ARLDAYFHYH GARGAFLMQA
510 520 530
GRTVEARKAF DRAIALAGTA AQAANIRQYL DTMATRV
Length:537
Mass (Da):59,022
Last modified:June 1, 2001 - v1
Checksum:i750A2D2F566CABD6
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE005673 Genomic DNA Translation: AAK23310.1
PIRiB87414
RefSeqiNP_420142.1, NC_002696.2
WP_010919206.1, NC_002696.2

Genome annotation databases

EnsemblBacteriaiAAK23310; AAK23310; CC_1329
GeneIDi941652
KEGGiccr:CC_1329
PATRICifig|190650.5.peg.1358

Similar proteinsi

Entry informationi

Entry nameiQ9A8M4_CAUVC
AccessioniPrimary (citable) accession number: Q9A8M4
Entry historyiIntegrated into UniProtKB/TrEMBL: June 1, 2001
Last sequence update: June 1, 2001
Last modified: April 25, 2018
This is version 116 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
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Main funding by: National Institutes of Health