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Protein
Submitted name:

Transient receptor potential Ca2+ channel 6B

Gene

trp6B

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

Complete GO annotation...

Keywords - Molecular functioni

ReceptorImported

Names & Taxonomyi

Protein namesi
Submitted name:
Transient receptor potential Ca2+ channel 6BImported
Submitted name:
Transient receptor potential cation channel, subfamily C, member 6, isoform CRA_aImported
Gene namesi
Name:trp6BImported
Synonyms:Trpc6Imported
ORF Names:rCG_31778Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei349 – 368HelicalSequence analysisAdd BLAST20
Transmembranei388 – 407HelicalSequence analysisAdd BLAST20
Transmembranei435 – 453HelicalSequence analysisAdd BLAST19
Transmembranei473 – 492HelicalSequence analysisAdd BLAST20
Transmembranei538 – 559HelicalSequence analysisAdd BLAST22
Transmembranei579 – 601HelicalSequence analysisAdd BLAST23
Transmembranei648 – 669HelicalSequence analysisAdd BLAST22

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000008905.

Structurei

3D structure databases

ProteinModelPortaliQ99N77.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini50 – 100ANK_REP_REGIONInterPro annotationAdd BLAST51
Domaini163 – 195ANK_REP_REGIONInterPro annotationAdd BLAST33

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili829 – 864Sequence analysisAdd BLAST36

Sequence similaritiesi

Belongs to the transient receptor (TC 1.A.4) family. [View classification]SAAS annotation
Contains 1 ANK repeat.UniRule annotation

Keywords - Domaini

ANK repeatUniRule annotationSAAS annotation, Coiled coilSequence analysis, RepeatSAAS annotation, Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiKOG3609. Eukaryota.
ENOG410XQ0Y. LUCA.
HOVERGENiHBG068337.

Family and domain databases

Gene3Di1.25.40.20. 1 hit.
InterProiIPR002110. Ankyrin_rpt.
IPR020683. Ankyrin_rpt-contain_dom.
IPR005821. Ion_trans_dom.
IPR004729. TRP_channel.
IPR013555. TRP_dom.
IPR005462. TRPC6_channel.
IPR002153. TRPC_channel.
[Graphical view]
PfamiPF12796. Ank_2. 1 hit.
PF00520. Ion_trans. 1 hit.
PF08344. TRP_2. 1 hit.
[Graphical view]
PRINTSiPR01097. TRNSRECEPTRP.
PR01647. TRPCHANNEL6.
SMARTiSM00248. ANK. 3 hits.
[Graphical view]
SUPFAMiSSF48403. SSF48403. 1 hit.
TIGRFAMsiTIGR00870. trp. 1 hit.
PROSITEiPS50297. ANK_REP_REGION. 2 hits.
PS50088. ANK_REPEAT. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q99N77-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSRGNENRLT HRRQTVLREK GRRLANRGPA YMFNDHSTSL SIEEERFLDA
60 70 80 90 100
AEYGNIPVVR KMLEECLSLN VNCVDYMGQN ALQLAVANEH LEITELLLKK
110 120 130 140 150
ENLSRVGDAL LLAISKGYVR IVEAILNHPA FAEGKRLATS PSQSELQQDD
160 170 180 190 200
FYAYDEDGTR FSHDVTPIIL AAHCQEYEIV HTLLRKGARI ERPHDYFCKC
210 220 230 240 250
TECSQKQKHD SFSHSRSRIN AYKGLASPAY LSLSSEDPVM TALELSNELA
260 270 280 290 300
VLANIEKEFK NDYRKLSMQC KDFVVGLLDL CRNTEEVEAI LNGDAETRQP
310 320 330 340 350
GDLARPNLSR LKLAIKYEVK KFVAHPNCQQ QLLSIWYENL SGLRQQTMAV
360 370 380 390 400
KFLVVLAVAI GLPFLALIYW CAPCSKMGKI LRGPFMKFVA HAASFTIFLG
410 420 430 440 450
LLVMNAADRF EGTKLLPNET STDNARQLFR MKTSCFSWME MLIISWVIGM
460 470 480 490 500
IWAECKEIWT QGPKEYLFEL WNMLDFGMLA IFAASFIARF MAFWHASKAQ
510 520 530 540 550
SIIDANDTLK DLTKVTLGDN VKYYNLARIK WDPTDPQIIS EGLYAIAVVL
560 570 580 590 600
SFSRIAYILP ANESFGPLQI SLGRTVKDIF KFMVIFIMVF VAFMIGMFNL
610 620 630 640 650
YSYYIGAKQN EAFTTVEESF KTLFWAIFGL SEVKSVVINY NHKFIENIGY
660 670 680 690 700
VLYGVYNVTM VIVLLNMLIA MINSSFQEIE DDADVEWKFA RAKLWFSYFE
710 720 730 740 750
EGRTLPVPFN LVPSPKSLLY LLLKFKKWMS ELIQGHKKGF QEDAEMNKRN
760 770 780 790 800
EEKKFGILGS HEDLSKFSLD RNQLAHNKQS STRSSEDFHL NSFSNPPRQY
810 820 830 840 850
QKIMKRLIKR YVLQAQIDKE SDEVNEGELK EIKQDISSLR YELLEEKSQN
860 870
TEDLAELIRK LGERLSLESK QEESRR
Length:876
Mass (Da):100,670
Last modified:June 1, 2001 - v1
Checksum:iD3E8277C60155CC3
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB051213 Genomic DNA. Translation: BAB41216.1.
CH473993 Genomic DNA. Translation: EDL78510.1.
UniGeneiRn.105986.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB051213 Genomic DNA. Translation: BAB41216.1.
CH473993 Genomic DNA. Translation: EDL78510.1.
UniGeneiRn.105986.

3D structure databases

ProteinModelPortaliQ99N77.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000008905.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Phylogenomic databases

eggNOGiKOG3609. Eukaryota.
ENOG410XQ0Y. LUCA.
HOVERGENiHBG068337.

Miscellaneous databases

ChiTaRSiTrpc6. rat.

Family and domain databases

Gene3Di1.25.40.20. 1 hit.
InterProiIPR002110. Ankyrin_rpt.
IPR020683. Ankyrin_rpt-contain_dom.
IPR005821. Ion_trans_dom.
IPR004729. TRP_channel.
IPR013555. TRP_dom.
IPR005462. TRPC6_channel.
IPR002153. TRPC_channel.
[Graphical view]
PfamiPF12796. Ank_2. 1 hit.
PF00520. Ion_trans. 1 hit.
PF08344. TRP_2. 1 hit.
[Graphical view]
PRINTSiPR01097. TRNSRECEPTRP.
PR01647. TRPCHANNEL6.
SMARTiSM00248. ANK. 3 hits.
[Graphical view]
SUPFAMiSSF48403. SSF48403. 1 hit.
TIGRFAMsiTIGR00870. trp. 1 hit.
PROSITEiPS50297. ANK_REP_REGION. 2 hits.
PS50088. ANK_REPEAT. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiQ99N77_RAT
AccessioniPrimary (citable) accession number: Q99N77
Entry historyi
Integrated into UniProtKB/TrEMBL: June 1, 2001
Last sequence update: June 1, 2001
Last modified: November 2, 2016
This is version 95 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.