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Q99LL6 (Q99LL6_MOUSE) Unreviewed, UniProtKB/TrEMBL

Last modified April 3, 2013. Version 60. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Col1a1 protein EMBL AAH03198.1
Gene names
Name:Col1a1 EMBL AAH03198.1 MGI 88467
OrganismMus musculus (Mouse) EMBL AAH03198.1
Taxonomic identifier10090 [NCBI]
Taxonomic lineageEukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Mus › Mus

Protein attributes

Sequence length589 AA.
Sequence statusFragment.
Protein existenceEvidence at transcript level

Ontologies

Gene Ontology (GO)
   Biological_processblood vessel development

Inferred from mutant phenotype PubMed 14630726. Source: MGI

bone trabecula formation

Inferred from genetic interaction PubMed 17440987. Source: MGI

cartilage development involved in endochondral bone morphogenesis

Inferred from mutant phenotype PubMed 18248096. Source: MGI

cellular response to amino acid stimulus

Inferred from direct assay PubMed 20548288. Source: MGI

cellular response to retinoic acid

Inferred from electronic annotation. Source: Compara

cellular response to transforming growth factor beta stimulus

Inferred from electronic annotation. Source: Compara

collagen biosynthetic process

Inferred from electronic annotation. Source: Compara

collagen fibril organization

Inferred from electronic annotation. Source: Compara

embryonic skeletal system development

Inferred from electronic annotation. Source: Compara

endochondral ossification

Inferred from mutant phenotype PubMed 8130375. Source: MGI

face morphogenesis

Inferred from genetic interaction PubMed 17440987. Source: MGI

intramembranous ossification

Inferred from genetic interaction PubMed 17440987. Source: MGI

negative regulation of cell-substrate adhesion

Inferred from direct assay PubMed 17018525. Source: MGI

positive regulation of canonical Wnt receptor signaling pathway

Inferred from electronic annotation. Source: Compara

positive regulation of cell migration

Inferred from electronic annotation. Source: Compara

positive regulation of epithelial to mesenchymal transition

Inferred from electronic annotation. Source: Compara

positive regulation of transcription, DNA-dependent

Inferred from electronic annotation. Source: Compara

protein heterotrimerization

Inferred from direct assay PubMed 9213002. Source: MGI

protein localization to nucleus

Inferred from electronic annotation. Source: Compara

protein transport

Inferred from mutant phenotype PubMed 8906420. Source: MGI

response to cAMP

Inferred from electronic annotation. Source: Compara

response to corticosteroid stimulus

Inferred from electronic annotation. Source: Compara

response to hydrogen peroxide

Inferred from electronic annotation. Source: Compara

response to mechanical stimulus

Inferred from electronic annotation. Source: Compara

response to nutrient

Inferred from electronic annotation. Source: Compara

response to peptide hormone stimulus

Inferred from electronic annotation. Source: Compara

sensory perception of sound

Inferred from electronic annotation. Source: Compara

skin development

Inferred from mutant phenotype PubMed 18248096. Source: MGI

skin morphogenesis

Inferred from electronic annotation. Source: Compara

tooth mineralization

Inferred from electronic annotation. Source: Compara

visual perception

Inferred from electronic annotation. Source: Compara

wound healing

Inferred from electronic annotation. Source: Compara

   Cellular_componentcollagen type I

Inferred from direct assay PubMed 8018053. Source: MGI

cytoplasm

Inferred from direct assay PubMed 8018053. Source: MGI

extracellular space

Inferred from electronic annotation. Source: Compara

   Molecular_functionextracellular matrix structural constituent

Inferred from direct assay PubMed 15383546. Source: MGI

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Experimental info

Non-terminal residue11 EMBL AAH03198.1

Sequences

Sequence LengthMass (Da)Tools
Q99LL6 [UniParc].

Last modified June 1, 2001. Version 1.
Checksum: 81847495E5E05CEF

FASTA58958,805
        10         20         30         40         50         60 
FPGAAGRVGP PGPSGNAGPP GPPGPVGKEG GKGPRGETGP AGRPGEVGPP GPPGPAGEKG 

        70         80         90        100        110        120 
SPGADGPAGS PGTPGPQGIA GQRGVVGLPG QRGERGFPGL PGPSGEPGKQ GPSGSSGERG 

       130        140        150        160        170        180 
PPGPMGPPGL AGPPGESGRE GSPGAEGSPG RDGAPGAKGD RGETGPAGPP GAPGAPGAPG 

       190        200        210        220        230        240 
PVGPAGKNGD RGETGPAGPA GPIGPAGARG PAGPQGPRGD KGETGEQGDR GIKGHRGFSG 

       250        260        270        280        290        300 
LQGPPGSPGS PGEQGPSGAS GPAGPRGPPG SAGSPGKDGL NGLPGPIGPP GPRGRTGDSG 

       310        320        330        340        350        360 
PAGPPGPPGP PGPPGPPSGG YDFSFLPQPP QEKSQDGGRY YRADDANVVR DRDLEVDTTL 

       370        380        390        400        410        420 
KSLSQQIENI RSPEGSRKNP ARTCRDLKMC HSDWKSGEYW IDPNQGCNLD AIKVYCNMET 

       430        440        450        460        470        480 
GQTCVFPTQP SVPQKNWYIS PNPKEKKHVW FGESMTDGFP FEYGSEGSDP ADVAIQLTFL 

       490        500        510        520        530        540 
RLMSTEASQN ITYHCKNSVA YMDQQTGNLK KALLLQGSNE IELRGEGNSR FTYSTLVDGC 

       550        560        570        580 
TSHTGTWGKT VIEYKTTKTS RLPIIDVAPL DIGAPDQEFG LDIGPACFV

« Hide

References

[1]"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
The MGC Project Team
Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M. expand/collapse author list , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Strain: FVB/N EMBL AAH03198.1.
Tissue: Mammary tumor. Metallothionien-TGF alpha model. 10 month old virgin mouse. Taken by biopsy. EMBL AAH03198.1.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		BC003198 mRNA. Translation: AAH03198.1.
IPIIPI00329872.
UniGeneMm.277735.
Mm.458212.

3D structure databases

ModBaseSearch...

Protein-protein interaction databases

STRINGQ99LL6.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Organism-specific databases

MGIMGI:88467. Col1a1.

Phylogenomic databases

HOVERGENHBG103137.
InParanoidQ99LL6.

Gene expression databases

ArrayExpressQ99LL6.
BgeeQ99LL6.
GenevestigatorQ99LL6.

Family and domain databases

InterProIPR008160. Collagen.
IPR000885. Fib_collagen_C.
[Graphical view]
PfamPF01410. COLFI. 1 hit.
PF01391. Collagen. 5 hits.
[Graphical view]
ProDomPD002078. Fib_collagen_C. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SMARTSM00038. COLFI. 1 hit.
[Graphical view]
PROSITEPS51461. NC1_FIB. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

ChiTaRSCOL1A1. mouse.
SOURCESearch...

Entry information

Entry nameQ99LL6_MOUSE
AccessionPrimary (citable) accession number: Q99LL6
Entry history
Integrated into UniProtKB/TrEMBL: June 1, 2001
Last sequence update: June 1, 2001
Last modified: April 3, 2013
This is version 60 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info