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Q99LL6 (Q99LL6_MOUSE) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 69. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein names
Gene names
Name:Col1a1 EMBL AAH03198.1 MGI 88467
OrganismMus musculus (Mouse) EMBL AAH03198.1
Taxonomic identifier10090 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus

Protein attributes

Sequence length589 AA.
Sequence statusFragment.
Protein existenceEvidence at transcript level

Ontologies

Gene Ontology (GO)
   Biological_processblood vessel development

Inferred from mutant phenotype PubMed 14630726. Source: MGI

bone trabecula formation

Inferred from genetic interaction PubMed 17440987. Source: MGI

cartilage development involved in endochondral bone morphogenesis

Inferred from mutant phenotype PubMed 18248096. Source: MGI

cellular response to amino acid stimulus

Inferred from direct assay PubMed 20548288. Source: MGI

cellular response to retinoic acid

Inferred from electronic annotation. Source: Ensembl

cellular response to transforming growth factor beta stimulus

Inferred from electronic annotation. Source: Ensembl

collagen biosynthetic process

Inferred from electronic annotation. Source: Ensembl

collagen fibril organization

Inferred from electronic annotation. Source: Ensembl

embryonic skeletal system development

Inferred from electronic annotation. Source: Ensembl

endochondral ossification

Inferred from mutant phenotype PubMed 8130375. Source: MGI

face morphogenesis

Inferred from genetic interaction PubMed 17440987. Source: MGI

intramembranous ossification

Inferred from genetic interaction PubMed 17440987. Source: MGI

negative regulation of cell-substrate adhesion

Inferred from direct assay PubMed 17018525. Source: MGI

positive regulation of canonical Wnt signaling pathway

Inferred from electronic annotation. Source: Ensembl

positive regulation of cell migration

Inferred from electronic annotation. Source: Ensembl

positive regulation of epithelial to mesenchymal transition

Inferred from electronic annotation. Source: Ensembl

positive regulation of transcription, DNA-templated

Inferred from electronic annotation. Source: Ensembl

protein heterotrimerization

Inferred from direct assay PubMed 9213002. Source: MGI

protein localization to nucleus

Inferred from electronic annotation. Source: Ensembl

protein transport

Inferred from mutant phenotype PubMed 8906420. Source: MGI

response to cAMP

Inferred from electronic annotation. Source: Ensembl

response to corticosteroid

Inferred from electronic annotation. Source: Ensembl

response to estradiol

Inferred from electronic annotation. Source: Ensembl

response to hydrogen peroxide

Inferred from electronic annotation. Source: Ensembl

response to mechanical stimulus

Inferred from electronic annotation. Source: Ensembl

response to nutrient

Inferred from electronic annotation. Source: Ensembl

response to peptide hormone

Inferred from electronic annotation. Source: Ensembl

sensory perception of sound

Inferred from electronic annotation. Source: Ensembl

skeletal system development

Inferred from mutant phenotype PubMed 8163675. Source: MGI

skeletal system morphogenesis

Inferred from genetic interaction PubMed 17440987. Source: MGI

skin development

Inferred from mutant phenotype PubMed 18248096. Source: MGI

skin morphogenesis

Inferred from electronic annotation. Source: Ensembl

tooth mineralization

Inferred from electronic annotation. Source: Ensembl

visual perception

Inferred from electronic annotation. Source: Ensembl

wound healing

Inferred from electronic annotation. Source: Ensembl

   Cellular_componentcollagen trimer

Inferred from direct assay PubMed 10608859PubMed 15383546PubMed 17662583PubMed 7704020PubMed 8686743. Source: MGI

collagen type I trimer

Inferred from direct assay PubMed 8018053. Source: MGI

cytoplasm

Inferred from direct assay PubMed 8018053. Source: MGI

extracellular matrix

Inferred from direct assay PubMed 17029294PubMed 2209468PubMed 7573384PubMed 7589890PubMed 7629088PubMed 8906420PubMed 8984825. Source: MGI

extracellular space

Inferred from electronic annotation. Source: Ensembl

proteinaceous extracellular matrix

Inferred from direct assay PubMed 10878613. Source: MGI

   Molecular_functionextracellular matrix structural constituent

Inferred from direct assay PubMed 15383546. Source: MGI

protein binding

Inferred from physical interaction PubMed 17018525PubMed 7629088PubMed 9213002. Source: MGI

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Experimental info

Non-terminal residue11 EMBL AAH03198.1

Sequences

Sequence LengthMass (Da)Tools
Q99LL6 [UniParc].

Last modified June 1, 2001. Version 1.
Checksum: 81847495E5E05CEF

FASTA58958,805
        10         20         30         40         50         60 
FPGAAGRVGP PGPSGNAGPP GPPGPVGKEG GKGPRGETGP AGRPGEVGPP GPPGPAGEKG 

        70         80         90        100        110        120 
SPGADGPAGS PGTPGPQGIA GQRGVVGLPG QRGERGFPGL PGPSGEPGKQ GPSGSSGERG 

       130        140        150        160        170        180 
PPGPMGPPGL AGPPGESGRE GSPGAEGSPG RDGAPGAKGD RGETGPAGPP GAPGAPGAPG 

       190        200        210        220        230        240 
PVGPAGKNGD RGETGPAGPA GPIGPAGARG PAGPQGPRGD KGETGEQGDR GIKGHRGFSG 

       250        260        270        280        290        300 
LQGPPGSPGS PGEQGPSGAS GPAGPRGPPG SAGSPGKDGL NGLPGPIGPP GPRGRTGDSG 

       310        320        330        340        350        360 
PAGPPGPPGP PGPPGPPSGG YDFSFLPQPP QEKSQDGGRY YRADDANVVR DRDLEVDTTL 

       370        380        390        400        410        420 
KSLSQQIENI RSPEGSRKNP ARTCRDLKMC HSDWKSGEYW IDPNQGCNLD AIKVYCNMET 

       430        440        450        460        470        480 
GQTCVFPTQP SVPQKNWYIS PNPKEKKHVW FGESMTDGFP FEYGSEGSDP ADVAIQLTFL 

       490        500        510        520        530        540 
RLMSTEASQN ITYHCKNSVA YMDQQTGNLK KALLLQGSNE IELRGEGNSR FTYSTLVDGC 

       550        560        570        580 
TSHTGTWGKT VIEYKTTKTS RLPIIDVAPL DIGAPDQEFG LDIGPACFV 

« Hide

References

[1]"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
The MGC Project Team
Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M. expand/collapse author list , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Strain: FVB/N EMBL AAH03198.1.
Tissue: Mammary tumor. Metallothionien-TGF alpha model. 10 month old virgin mouse. Taken by biopsy. EMBL AAH03198.1.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
BC003198 mRNA. Translation: AAH03198.1.
UniGeneMm.277735.
Mm.458212.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Organism-specific databases

MGIMGI:88467. Col1a1.

Phylogenomic databases

HOVERGENHBG103137.
InParanoidQ99LL6.

Gene expression databases

ArrayExpressQ99LL6.
BgeeQ99LL6.
GenevestigatorQ99LL6.

Family and domain databases

InterProIPR008160. Collagen.
IPR000885. Fib_collagen_C.
[Graphical view]
PfamPF01410. COLFI. 1 hit.
PF01391. Collagen. 5 hits.
[Graphical view]
ProDomPD002078. Fib_collagen_C. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SMARTSM00038. COLFI. 1 hit.
[Graphical view]
PROSITEPS51461. NC1_FIB. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

ChiTaRSCOL1A1. mouse.
SOURCESearch...

Entry information

Entry nameQ99LL6_MOUSE
AccessionPrimary (citable) accession number: Q99LL6
Entry history
Integrated into UniProtKB/TrEMBL: June 1, 2001
Last sequence update: June 1, 2001
Last modified: July 9, 2014
This is version 69 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)