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Q99LL6

- Q99LL6_MOUSE

UniProt

Q99LL6 - Q99LL6_MOUSE

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Protein
Submitted name:

Col1a1 protein

Gene

Col1a1

Organism
Mus musculus (Mouse)
Status
Unreviewed - Annotation score: 5 out of 5- Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  1. extracellular matrix structural constituent Source: MGI

GO - Biological processi

  1. blood vessel development Source: MGI
  2. bone trabecula formation Source: MGI
  3. cartilage development involved in endochondral bone morphogenesis Source: MGI
  4. cellular response to amino acid stimulus Source: MGI
  5. cellular response to retinoic acid Source: Ensembl
  6. cellular response to transforming growth factor beta stimulus Source: Ensembl
  7. collagen biosynthetic process Source: Ensembl
  8. collagen fibril organization Source: Ensembl
  9. embryonic skeletal system development Source: Ensembl
  10. endochondral ossification Source: MGI
  11. face morphogenesis Source: MGI
  12. intramembranous ossification Source: MGI
  13. negative regulation of cell-substrate adhesion Source: MGI
  14. positive regulation of canonical Wnt signaling pathway Source: Ensembl
  15. positive regulation of cell migration Source: Ensembl
  16. positive regulation of epithelial to mesenchymal transition Source: Ensembl
  17. positive regulation of transcription, DNA-templated Source: Ensembl
  18. protein heterotrimerization Source: MGI
  19. protein localization to nucleus Source: Ensembl
  20. protein transport Source: MGI
  21. response to cAMP Source: Ensembl
  22. response to corticosteroid Source: Ensembl
  23. response to estradiol Source: Ensembl
  24. response to hydrogen peroxide Source: Ensembl
  25. response to mechanical stimulus Source: Ensembl
  26. response to nutrient Source: Ensembl
  27. response to peptide hormone Source: Ensembl
  28. sensory perception of sound Source: Ensembl
  29. skeletal system development Source: MGI
  30. skeletal system morphogenesis Source: MGI
  31. skin development Source: MGI
  32. skin morphogenesis Source: Ensembl
  33. tooth mineralization Source: Ensembl
  34. visual perception Source: Ensembl
  35. wound healing Source: Ensembl
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Col1a1 proteinImported
Gene namesi
Name:Col1a1Imported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus

Organism-specific databases

MGIiMGI:88467. Col1a1.

Subcellular locationi

GO - Cellular componenti

  1. collagen trimer Source: MGI
  2. collagen type I trimer Source: MGI
  3. cytoplasm Source: MGI
  4. extracellular matrix Source: MGI
  5. extracellular space Source: Ensembl
  6. proteinaceous extracellular matrix Source: MGI
Complete GO annotation...

Expressioni

Gene expression databases

BgeeiQ99LL6.
ExpressionAtlasiQ99LL6. baseline and differential.
GenevestigatoriQ99LL6.

Family & Domainsi

Phylogenomic databases

HOVERGENiHBG103137.

Family and domain databases

InterProiIPR008160. Collagen.
IPR000885. Fib_collagen_C.
[Graphical view]
PfamiPF01410. COLFI. 1 hit.
PF01391. Collagen. 5 hits.
[Graphical view]
ProDomiPD002078. Fib_collagen_C. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SMARTiSM00038. COLFI. 1 hit.
[Graphical view]
PROSITEiPS51461. NC1_FIB. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Fragment.

Q99LL6 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
FPGAAGRVGP PGPSGNAGPP GPPGPVGKEG GKGPRGETGP AGRPGEVGPP
60 70 80 90 100
GPPGPAGEKG SPGADGPAGS PGTPGPQGIA GQRGVVGLPG QRGERGFPGL
110 120 130 140 150
PGPSGEPGKQ GPSGSSGERG PPGPMGPPGL AGPPGESGRE GSPGAEGSPG
160 170 180 190 200
RDGAPGAKGD RGETGPAGPP GAPGAPGAPG PVGPAGKNGD RGETGPAGPA
210 220 230 240 250
GPIGPAGARG PAGPQGPRGD KGETGEQGDR GIKGHRGFSG LQGPPGSPGS
260 270 280 290 300
PGEQGPSGAS GPAGPRGPPG SAGSPGKDGL NGLPGPIGPP GPRGRTGDSG
310 320 330 340 350
PAGPPGPPGP PGPPGPPSGG YDFSFLPQPP QEKSQDGGRY YRADDANVVR
360 370 380 390 400
DRDLEVDTTL KSLSQQIENI RSPEGSRKNP ARTCRDLKMC HSDWKSGEYW
410 420 430 440 450
IDPNQGCNLD AIKVYCNMET GQTCVFPTQP SVPQKNWYIS PNPKEKKHVW
460 470 480 490 500
FGESMTDGFP FEYGSEGSDP ADVAIQLTFL RLMSTEASQN ITYHCKNSVA
510 520 530 540 550
YMDQQTGNLK KALLLQGSNE IELRGEGNSR FTYSTLVDGC TSHTGTWGKT
560 570 580
VIEYKTTKTS RLPIIDVAPL DIGAPDQEFG LDIGPACFV
Length:589
Mass (Da):58,805
Last modified:June 1, 2001 - v1
Checksum:i81847495E5E05CEF
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Non-terminal residuei1 – 11Imported

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
BC003198 mRNA. Translation: AAH03198.1.
UniGeneiMm.277735.
Mm.458212.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
BC003198 mRNA. Translation: AAH03198.1 .
UniGenei Mm.277735.
Mm.458212.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Organism-specific databases

MGIi MGI:88467. Col1a1.

Phylogenomic databases

HOVERGENi HBG103137.

Miscellaneous databases

ChiTaRSi COL1A1. mouse.
SOURCEi Search...

Gene expression databases

Bgeei Q99LL6.
ExpressionAtlasi Q99LL6. baseline and differential.
Genevestigatori Q99LL6.

Family and domain databases

InterProi IPR008160. Collagen.
IPR000885. Fib_collagen_C.
[Graphical view ]
Pfami PF01410. COLFI. 1 hit.
PF01391. Collagen. 5 hits.
[Graphical view ]
ProDomi PD002078. Fib_collagen_C. 1 hit.
[Graphical view ] [Entries sharing at least one domain ]
SMARTi SM00038. COLFI. 1 hit.
[Graphical view ]
PROSITEi PS51461. NC1_FIB. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M.
    , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: FVB/NImported.
    Tissue: Mammary tumor. Metallothionien-TGF alpha model. 10 month old virgin mouse. Taken by biopsy.Imported.

Entry informationi

Entry nameiQ99LL6_MOUSE
AccessioniPrimary (citable) accession number: Q99LL6
Entry historyi
Integrated into UniProtKB/TrEMBL: June 1, 2001
Last sequence update: June 1, 2001
Last modified: October 29, 2014
This is version 71 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)