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Protein

Probable ribosome biogenesis protein RLP24

Gene

Rsl24d1

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Functioni

Involved in the biogenesis of the 60S ribosomal subunit. Ensures the docking of GTPBP4/NOG1 to pre-60S particles (By similarity).By similarity

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Ribosome biogenesis

Names & Taxonomyi

Protein namesi
Recommended name:
Probable ribosome biogenesis protein RLP24
Alternative name(s):
Ribosomal L24 domain-containing protein 1
Ribosomal protein L24-like
Gene namesi
Name:Rsl24d1
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome 9

Organism-specific databases

MGIiMGI:2681840. Rsl24d1.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 163163Probable ribosome biogenesis protein RLP24PRO_0000136897Add
BLAST

Proteomic databases

EPDiQ99L28.
MaxQBiQ99L28.
PaxDbiQ99L28.
PRIDEiQ99L28.

PTM databases

iPTMnetiQ99L28.
PhosphoSiteiQ99L28.

Expressioni

Gene expression databases

BgeeiENSMUSG00000032215.
CleanExiMM_BC003885.
ExpressionAtlasiQ99L28. baseline and differential.
GenevisibleiQ99L28. MM.

Interactioni

Subunit structurei

Associated with nucleolar and cytoplasmic pre-60S particles. At the end of biogenesis it dissociates from cytoplasmic pre-60S particles and is likely to be exchanged for its ribosomal homolog, RPL24 (By similarity).By similarity

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000034738.

Structurei

3D structure databases

ProteinModelPortaliQ99L28.
SMRiQ99L28. Positions 1-56.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L24e family.Curated

Phylogenomic databases

eggNOGiKOG1723. Eukaryota.
COG2075. LUCA.
GeneTreeiENSGT00550000074895.
HOGENOMiHOG000184344.
HOVERGENiHBG105577.
InParanoidiQ99L28.
KOiK02896.
OMAiKAPHAGK.
PhylomeDBiQ99L28.
TreeFamiTF314926.

Family and domain databases

CDDicd00472. Ribosomal_L24e_L24. 1 hit.
Gene3Di2.30.170.20. 1 hit.
HAMAPiMF_00773. Ribosomal_L24e. 1 hit.
InterProiIPR023438. Ribosomal_L24e.
IPR000988. Ribosomal_L24e-rel.
IPR023442. Ribosomal_L24e_CS.
IPR024546. Ribosome_biogen_RLP24.
IPR011017. TRASH_dom.
[Graphical view]
PANTHERiPTHR10792. PTHR10792. 1 hit.
PTHR10792:SF8. PTHR10792:SF8. 1 hit.
PfamiPF01246. Ribosomal_L24e. 1 hit.
[Graphical view]
SMARTiSM00746. TRASH. 1 hit.
[Graphical view]
PROSITEiPS01073. RIBOSOMAL_L24E. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q99L28-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRIEKCYFCS GPIYPGHGMM FVRNDCKVFR FCKSKCHKNF KKKRNPRKVR
60 70 80 90 100
WTKAFRKAAG KELTVDNSFE FEKRRNEPVK YQRELWNKTI DAMKRVEEIK
110 120 130 140 150
QKRQAKFIMN RLKKNKELQK VQDIKEVKQN IHLIRAPLAG KGKQLEEKMV
160
QQLQEDVDME EAS
Length:163
Mass (Da):19,611
Last modified:June 1, 2001 - v1
Checksum:i5393707FEA8CC417
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC003885 mRNA. Translation: AAH03885.1.
CCDSiCCDS40688.1.
RefSeqiNP_941011.1. NM_198609.2.
UniGeneiMm.379366.

Genome annotation databases

EnsembliENSMUST00000034738; ENSMUSP00000034738; ENSMUSG00000032215.
GeneIDi225215.
KEGGimmu:225215.
UCSCiuc009qra.1. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC003885 mRNA. Translation: AAH03885.1.
CCDSiCCDS40688.1.
RefSeqiNP_941011.1. NM_198609.2.
UniGeneiMm.379366.

3D structure databases

ProteinModelPortaliQ99L28.
SMRiQ99L28. Positions 1-56.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000034738.

PTM databases

iPTMnetiQ99L28.
PhosphoSiteiQ99L28.

Proteomic databases

EPDiQ99L28.
MaxQBiQ99L28.
PaxDbiQ99L28.
PRIDEiQ99L28.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000034738; ENSMUSP00000034738; ENSMUSG00000032215.
GeneIDi225215.
KEGGimmu:225215.
UCSCiuc009qra.1. mouse.

Organism-specific databases

CTDi51187.
MGIiMGI:2681840. Rsl24d1.

Phylogenomic databases

eggNOGiKOG1723. Eukaryota.
COG2075. LUCA.
GeneTreeiENSGT00550000074895.
HOGENOMiHOG000184344.
HOVERGENiHBG105577.
InParanoidiQ99L28.
KOiK02896.
OMAiKAPHAGK.
PhylomeDBiQ99L28.
TreeFamiTF314926.

Miscellaneous databases

PROiQ99L28.
SOURCEiSearch...

Gene expression databases

BgeeiENSMUSG00000032215.
CleanExiMM_BC003885.
ExpressionAtlasiQ99L28. baseline and differential.
GenevisibleiQ99L28. MM.

Family and domain databases

CDDicd00472. Ribosomal_L24e_L24. 1 hit.
Gene3Di2.30.170.20. 1 hit.
HAMAPiMF_00773. Ribosomal_L24e. 1 hit.
InterProiIPR023438. Ribosomal_L24e.
IPR000988. Ribosomal_L24e-rel.
IPR023442. Ribosomal_L24e_CS.
IPR024546. Ribosome_biogen_RLP24.
IPR011017. TRASH_dom.
[Graphical view]
PANTHERiPTHR10792. PTHR10792. 1 hit.
PTHR10792:SF8. PTHR10792:SF8. 1 hit.
PfamiPF01246. Ribosomal_L24e. 1 hit.
[Graphical view]
SMARTiSM00746. TRASH. 1 hit.
[Graphical view]
PROSITEiPS01073. RIBOSOMAL_L24E. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRLP24_MOUSE
AccessioniPrimary (citable) accession number: Q99L28
Entry historyi
Integrated into UniProtKB/Swiss-Prot: September 27, 2004
Last sequence update: June 1, 2001
Last modified: September 7, 2016
This is version 113 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.