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Protein

Protein RTF2 homolog

Gene

Rtfdc1

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Protein RTF2 homolog
Alternative name(s):
Replication termination factor 2 domain-containing protein 1
Gene namesi
Name:Rtfdc1
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome 2

Organism-specific databases

MGIiMGI:1913654. Rtfdc1.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 307307Protein RTF2 homologPRO_0000079428Add
BLAST

Proteomic databases

EPDiQ99K95.
MaxQBiQ99K95.
PaxDbiQ99K95.
PRIDEiQ99K95.

PTM databases

iPTMnetiQ99K95.
PhosphoSiteiQ99K95.
SwissPalmiQ99K95.

Expressioni

Gene expression databases

BgeeiQ99K95.
CleanExiMM_2410001C21RIK.
GenevisibleiQ99K95. MM.

Interactioni

Protein-protein interaction databases

BioGridi211448. 6 interactions.
IntActiQ99K95. 6 interactions.
STRINGi10090.ENSMUSP00000029005.

Structurei

3D structure databases

ProteinModelPortaliQ99K95.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the rtf2 family.Curated

Phylogenomic databases

eggNOGiKOG3113. Eukaryota.
ENOG41113CN. LUCA.
GeneTreeiENSGT00390000010923.
HOGENOMiHOG000230885.
HOVERGENiHBG051164.
InParanoidiQ99K95.
OMAiEFRWLHC.
OrthoDBiEOG7BW0KH.
PhylomeDBiQ99K95.
TreeFamiTF314621.

Family and domain databases

InterProiIPR006735. DUF602.
IPR027799. Rtf2_RING-finger.
[Graphical view]
PANTHERiPTHR12775. PTHR12775. 1 hit.
PfamiPF04641. Rtf2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q99K95-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGCDGGTIPK RHELVKGPKK VEKVDKDAEL VAQWNYCTLS QEILRRPIVA
60 70 80 90 100
CELGRLYNKD AVIEFLLDKS AEKALGKAAS HIRSIKNVTE LRLSDNPAWE
110 120 130 140 150
GDKGNTKGDK HDDLQRARFI CPVVGLEMNG RHRFCFLRCC GCVFSERALK
160 170 180 190 200
EIKAEVCHTC GAAFQEEDII VLNGTKEDVE MLKKRMEERR LRAKLEKKTK
210 220 230 240 250
KPKTATECAS KPGTTQDSAG PSKVKSGKPE EADPDPREKK STPAPRGAAT
260 270 280 290 300
NGSASGKVGK PPCGALKRSI ADSEESETYK SIFTSHSSAK RSKEESAHWV

THTSYCF
Length:307
Mass (Da):33,935
Last modified:June 1, 2001 - v1
Checksum:i94348165CC98B005
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK009901 mRNA. Translation: BAB26573.1.
AK028792 mRNA. Translation: BAC26123.1.
AK053258 mRNA. Translation: BAC35324.1.
AK077823 mRNA. Translation: BAC37024.1.
AK153121 mRNA. Translation: BAE31736.1.
AK167287 mRNA. Translation: BAE39393.1.
AL833787 Genomic DNA. Translation: CAM18026.1.
BC004803 mRNA. Translation: AAH04803.1.
BC049072 mRNA. Translation: AAH49072.2.
CCDSiCCDS17132.1.
RefSeqiNP_079818.1. NM_025542.2.
UniGeneiMm.25157.

Genome annotation databases

EnsembliENSMUST00000029005; ENSMUSP00000029005; ENSMUSG00000027502.
GeneIDi66404.
KEGGimmu:66404.
UCSCiuc008ocw.1. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK009901 mRNA. Translation: BAB26573.1.
AK028792 mRNA. Translation: BAC26123.1.
AK053258 mRNA. Translation: BAC35324.1.
AK077823 mRNA. Translation: BAC37024.1.
AK153121 mRNA. Translation: BAE31736.1.
AK167287 mRNA. Translation: BAE39393.1.
AL833787 Genomic DNA. Translation: CAM18026.1.
BC004803 mRNA. Translation: AAH04803.1.
BC049072 mRNA. Translation: AAH49072.2.
CCDSiCCDS17132.1.
RefSeqiNP_079818.1. NM_025542.2.
UniGeneiMm.25157.

3D structure databases

ProteinModelPortaliQ99K95.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi211448. 6 interactions.
IntActiQ99K95. 6 interactions.
STRINGi10090.ENSMUSP00000029005.

PTM databases

iPTMnetiQ99K95.
PhosphoSiteiQ99K95.
SwissPalmiQ99K95.

Proteomic databases

EPDiQ99K95.
MaxQBiQ99K95.
PaxDbiQ99K95.
PRIDEiQ99K95.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000029005; ENSMUSP00000029005; ENSMUSG00000027502.
GeneIDi66404.
KEGGimmu:66404.
UCSCiuc008ocw.1. mouse.

Organism-specific databases

CTDi51507.
MGIiMGI:1913654. Rtfdc1.

Phylogenomic databases

eggNOGiKOG3113. Eukaryota.
ENOG41113CN. LUCA.
GeneTreeiENSGT00390000010923.
HOGENOMiHOG000230885.
HOVERGENiHBG051164.
InParanoidiQ99K95.
OMAiEFRWLHC.
OrthoDBiEOG7BW0KH.
PhylomeDBiQ99K95.
TreeFamiTF314621.

Miscellaneous databases

NextBioi321583.
PROiQ99K95.
SOURCEiSearch...

Gene expression databases

BgeeiQ99K95.
CleanExiMM_2410001C21RIK.
GenevisibleiQ99K95. MM.

Family and domain databases

InterProiIPR006735. DUF602.
IPR027799. Rtf2_RING-finger.
[Graphical view]
PANTHERiPTHR12775. PTHR12775. 1 hit.
PfamiPF04641. Rtf2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The transcriptional landscape of the mammalian genome."
    Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J.
    , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
    Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: C57BL/6J.
    Tissue: Bone marrow, Forelimb, Skin and Tongue.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: C57BL/6J.
  3. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Brain and Mammary gland.
  4. Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
    Tissue: Brain, Lung and Spleen.

Entry informationi

Entry nameiRTF2_MOUSE
AccessioniPrimary (citable) accession number: Q99K95
Secondary accession number(s): A2APA0
, Q543D3, Q80X88, Q9CV27
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 10, 2002
Last sequence update: June 1, 2001
Last modified: May 11, 2016
This is version 97 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.