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Q99JZ0 (SDCB2_MOUSE) Reviewed, UniProtKB/Swiss-Prot

Last modified July 9, 2014. Version 85. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Syntenin-2
Alternative name(s):
Syndecan-binding protein 2
Gene names
Name:Sdcbp2
OrganismMus musculus (Mouse) [Reference proteome]
Taxonomic identifier10090 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus

Protein attributes

Sequence length292 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Subunit structure

Monomer and homodimer. Interacts with SDCBP By similarity.

Sequence similarities

Contains 2 PDZ (DHR) domains.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 292292Syntenin-2
PRO_0000184005

Regions

Domain108 – 18780PDZ 1
Domain192 – 26776PDZ 2

Sequences

Sequence LengthMass (Da)Tools
Q99JZ0 [UniParc].

Last modified June 1, 2001. Version 1.
Checksum: C694316BC0A0931D

FASTA29231,565
        10         20         30         40         50         60 
MSVLYPSLED LKVGQVIQAQ GRASPTMPTL PAPMASAPPL SELYPNLAEL ESYMGLSLSS 

        70         80         90        100        110        120 
QEVQKNLTQI PDSDNMVVTS PGPGQVVAPV SGNNLGILRA EIKPGVREIH LCKDERGKTG 

       130        140        150        160        170        180 
LRLQAVDKGL FVQLVQANTP ASLVGLRFGD QILQIDGCDC AGWNTHKAHK VLKKASAEKI 

       190        200        210        220        230        240 
VMVIRDRPFQ RTVTMHKDSS GQVGFSIKKG KIVSVVKGSS AARNGLLTNH YVCEVNGQNV 

       250        260        270        280        290 
IGLKDKKVTE ILTTAGDVIT LTIIPTVIYE HMIKRLSPLL LHHTMDHSIP DT 

« Hide

References

[1]"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
The MGC Project Team
Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
BC005556 mRNA. Translation: AAH05556.1.
CCDSCCDS16870.1.
RefSeqNP_663510.1. NM_145535.2.
XP_006499367.1. XM_006499304.1.
XP_006499368.1. XM_006499305.1.
UniGeneMm.32068.

3D structure databases

ProteinModelPortalQ99JZ0.
SMRQ99JZ0. Positions 107-265.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

MINTMINT-140851.

PTM databases

PhosphoSiteQ99JZ0.

Proteomic databases

MaxQBQ99JZ0.
PRIDEQ99JZ0.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSMUST00000028950; ENSMUSP00000028950; ENSMUSG00000027456.
GeneID228765.
KEGGmmu:228765.
UCSCuc008nec.1. mouse.

Organism-specific databases

CTD27111.
MGIMGI:2385156. Sdcbp2.

Phylogenomic databases

eggNOGNOG140434.
GeneTreeENSGT00390000014465.
HOGENOMHOG000231604.
HOVERGENHBG053211.
InParanoidQ99JZ0.
OMAHTMDHSI.
OrthoDBEOG75MVWZ.
PhylomeDBQ99JZ0.
TreeFamTF327131.

Gene expression databases

ArrayExpressQ99JZ0.
BgeeQ99JZ0.
CleanExMM_SDCBP2.
GenevestigatorQ99JZ0.

Family and domain databases

Gene3D2.30.42.10. 2 hits.
InterProIPR001478. PDZ.
[Graphical view]
PfamPF00595. PDZ. 2 hits.
[Graphical view]
SMARTSM00228. PDZ. 2 hits.
[Graphical view]
SUPFAMSSF50156. SSF50156. 2 hits.
PROSITEPS50106. PDZ. 2 hits.
[Graphical view]
ProtoNetSearch...

Other

NextBio379104.
PROQ99JZ0.
SOURCESearch...

Entry information

Entry nameSDCB2_MOUSE
AccessionPrimary (citable) accession number: Q99JZ0
Entry history
Integrated into UniProtKB/Swiss-Prot: May 2, 2002
Last sequence update: June 1, 2001
Last modified: July 9, 2014
This is version 85 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

MGD cross-references

Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot