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Protein

Syntenin-2

Gene

Sdcbp2

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

Names & Taxonomyi

Protein namesi
Recommended name:
Syntenin-2
Alternative name(s):
Syndecan-binding protein 2
Gene namesi
Name:Sdcbp2
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome 2

Organism-specific databases

MGIiMGI:2385156. Sdcbp2.

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001840051 – 292Syntenin-2Add BLAST292

Proteomic databases

MaxQBiQ99JZ0.
PaxDbiQ99JZ0.
PRIDEiQ99JZ0.

PTM databases

PhosphoSitePlusiQ99JZ0.

Expressioni

Gene expression databases

BgeeiENSMUSG00000027456.
CleanExiMM_SDCBP2.
ExpressionAtlasiQ99JZ0. baseline and differential.
GenevisibleiQ99JZ0. MM.

Interactioni

Subunit structurei

Monomer and homodimer. Interacts with SDCBP (By similarity).By similarity

GO - Molecular functioni

Protein-protein interaction databases

IntActiQ99JZ0. 1 interactor.
MINTiMINT-140851.
STRINGi10090.ENSMUSP00000028950.

Structurei

3D structure databases

ProteinModelPortaliQ99JZ0.
SMRiQ99JZ0.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini108 – 187PDZ 1PROSITE-ProRule annotationAdd BLAST80
Domaini192 – 267PDZ 2PROSITE-ProRule annotationAdd BLAST76

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiENOG410IK98. Eukaryota.
ENOG410YNPQ. LUCA.
GeneTreeiENSGT00390000014465.
HOGENOMiHOG000231604.
HOVERGENiHBG053211.
InParanoidiQ99JZ0.
OMAiEIHLCKD.
OrthoDBiEOG091G0HJI.
PhylomeDBiQ99JZ0.
TreeFamiTF327131.

Family and domain databases

InterProiView protein in InterPro
IPR001478. PDZ.
PfamiView protein in Pfam
PF00595. PDZ. 2 hits.
SMARTiView protein in SMART
SM00228. PDZ. 2 hits.
SUPFAMiSSF50156. SSF50156. 2 hits.
PROSITEiView protein in PROSITE
PS50106. PDZ. 2 hits.

Sequencei

Sequence statusi: Complete.

Q99JZ0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSVLYPSLED LKVGQVIQAQ GRASPTMPTL PAPMASAPPL SELYPNLAEL
60 70 80 90 100
ESYMGLSLSS QEVQKNLTQI PDSDNMVVTS PGPGQVVAPV SGNNLGILRA
110 120 130 140 150
EIKPGVREIH LCKDERGKTG LRLQAVDKGL FVQLVQANTP ASLVGLRFGD
160 170 180 190 200
QILQIDGCDC AGWNTHKAHK VLKKASAEKI VMVIRDRPFQ RTVTMHKDSS
210 220 230 240 250
GQVGFSIKKG KIVSVVKGSS AARNGLLTNH YVCEVNGQNV IGLKDKKVTE
260 270 280 290
ILTTAGDVIT LTIIPTVIYE HMIKRLSPLL LHHTMDHSIP DT
Length:292
Mass (Da):31,565
Last modified:June 1, 2001 - v1
Checksum:iC694316BC0A0931D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC005556 mRNA. Translation: AAH05556.1.
CCDSiCCDS16870.1.
RefSeqiNP_663510.1. NM_145535.2.
XP_006499367.1. XM_006499304.2.
XP_006499368.1. XM_006499305.1.
UniGeneiMm.32068.

Genome annotation databases

EnsembliENSMUST00000028950; ENSMUSP00000028950; ENSMUSG00000027456.
GeneIDi228765.
KEGGimmu:228765.
UCSCiuc008nec.2. mouse.

Similar proteinsi

Entry informationi

Entry nameiSDCB2_MOUSE
AccessioniPrimary (citable) accession number: Q99JZ0
Entry historyiIntegrated into UniProtKB/Swiss-Prot: May 2, 2002
Last sequence update: June 1, 2001
Last modified: September 27, 2017
This is version 111 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot