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Q99JX1

- TAF11_MOUSE

UniProt

Q99JX1 - TAF11_MOUSE

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Protein
Transcription initiation factor TFIID subunit 11
Gene
Taf11
Organism
Mus musculus (Mouse)
Status
Reviewed - Annotation score: 3 out of 5 - Experimental evidence at transcript leveli

Functioni

Core TAFII present in both of the previously described TFIID species which either lack or contain TAFII30 (TFIID alpha and TFIID beta respectively) By similarity.

GO - Molecular functioni

  1. DNA binding Source: MGI
  2. transcription coactivator activity Source: Ensembl

GO - Biological processi

  1. positive regulation by host of viral transcription Source: Ensembl
  2. regulation of transcription, DNA-templated Source: UniProtKB-KW
  3. transcription initiation from RNA polymerase II promoter Source: InterPro
Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Names & Taxonomyi

Protein namesi
Recommended name:
Transcription initiation factor TFIID subunit 11
Alternative name(s):
TFIID subunit p30-beta
Transcription initiation factor TFIID 28 kDa subunit
Short name:
TAF(II)28
Short name:
TAFII-28
Short name:
TAFII28
Gene namesi
Name:Taf11
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
ProteomesiUP000000589: Chromosome 17

Organism-specific databases

MGIiMGI:1916026. Taf11.

Subcellular locationi

Nucleus By similarity

GO - Cellular componenti

  1. nucleus Source: MGI
  2. transcription factor TFIID complex Source: MGI
Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 211211Transcription initiation factor TFIID subunit 11
PRO_0000118903Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei1 – 11N-acetylmethionine By similarity

Keywords - PTMi

Acetylation

Proteomic databases

PRIDEiQ99JX1.

PTM databases

PhosphoSiteiQ99JX1.

Expressioni

Gene expression databases

BgeeiQ99JX1.
GenevestigatoriQ99JX1.

Interactioni

Subunit structurei

TFIID is composed of TATA binding protein (TBP) and a number of TBP-associated factors (TAFs) By similarity.

Protein-protein interaction databases

IntActiQ99JX1. 1 interaction.

Structurei

3D structure databases

ProteinModelPortaliQ99JX1.
SMRiQ99JX1. Positions 113-201.

Family & Domainsi

Domaini

TBP and TAFII18 bind to distinct domains of TAFII28 By similarity.

Sequence similaritiesi

Belongs to the TAF11 family.

Phylogenomic databases

eggNOGiCOG5251.
GeneTreeiENSGT00390000013228.
HOGENOMiHOG000006355.
HOVERGENiHBG079228.
InParanoidiQ99JX1.
KOiK03135.
OMAiKHKKITF.
OrthoDBiEOG7VDXQT.
PhylomeDBiQ99JX1.
TreeFamiTF315132.

Family and domain databases

Gene3Di1.10.20.10. 1 hit.
InterProiIPR009072. Histone-fold.
IPR006809. TAFII28.
[Graphical view]
PANTHERiPTHR13218. PTHR13218. 1 hit.
PfamiPF04719. TAFII28. 1 hit.
[Graphical view]
SUPFAMiSSF47113. SSF47113. 1 hit.

Sequencei

Sequence statusi: Complete.

Q99JX1-1 [UniParc]FASTAAdd to Basket

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MDNLGESPTD KGGEPGESEE TRATPGALVA ADTEGIPEET DRDGDADLKE    50
AAAEESELKS QDVSDVTAAE RENSSLLTPA AKKLKLDIKD KKEKKQKVDE 100
DEIQKMQILV SSFSEEQLNR YEMYRRSAFP KAAIKRLIQS ITGTSVSQNV 150
VIAMSGISKV FVGEVVEEAL DVCEKWGETP PLQPKHMREA VRRLKSKGQI 200
PNSKHKKITF F 211
Length:211
Mass (Da):23,333
Last modified:June 1, 2001 - v1
Checksum:iA19D3778C07513E7
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AK004168 mRNA. Translation: BAB23203.1.
AK050689 mRNA. Translation: BAC34381.1.
AK133851 mRNA. Translation: BAE21886.1.
BC005603 mRNA. Translation: AAH05603.1.
CCDSiCCDS28571.1.
RefSeqiNP_081112.1. NM_026836.2.
XP_006524924.1. XM_006524861.1.
XP_006524925.1. XM_006524862.1.
XP_006536847.1. XM_006536784.1.
XP_006536848.1. XM_006536785.1.
UniGeneiMm.267998.

Genome annotation databases

EnsembliENSMUST00000025057; ENSMUSP00000025057; ENSMUSG00000024218.
ENSMUST00000114848; ENSMUSP00000110498; ENSMUSG00000024218.
GeneIDi68776.
KEGGimmu:68776.
UCSCiuc008bpu.1. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AK004168 mRNA. Translation: BAB23203.1 .
AK050689 mRNA. Translation: BAC34381.1 .
AK133851 mRNA. Translation: BAE21886.1 .
BC005603 mRNA. Translation: AAH05603.1 .
CCDSi CCDS28571.1.
RefSeqi NP_081112.1. NM_026836.2.
XP_006524924.1. XM_006524861.1.
XP_006524925.1. XM_006524862.1.
XP_006536847.1. XM_006536784.1.
XP_006536848.1. XM_006536785.1.
UniGenei Mm.267998.

3D structure databases

ProteinModelPortali Q99JX1.
SMRi Q99JX1. Positions 113-201.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

IntActi Q99JX1. 1 interaction.

PTM databases

PhosphoSitei Q99JX1.

Proteomic databases

PRIDEi Q99JX1.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSMUST00000025057 ; ENSMUSP00000025057 ; ENSMUSG00000024218 .
ENSMUST00000114848 ; ENSMUSP00000110498 ; ENSMUSG00000024218 .
GeneIDi 68776.
KEGGi mmu:68776.
UCSCi uc008bpu.1. mouse.

Organism-specific databases

CTDi 6882.
MGIi MGI:1916026. Taf11.

Phylogenomic databases

eggNOGi COG5251.
GeneTreei ENSGT00390000013228.
HOGENOMi HOG000006355.
HOVERGENi HBG079228.
InParanoidi Q99JX1.
KOi K03135.
OMAi KHKKITF.
OrthoDBi EOG7VDXQT.
PhylomeDBi Q99JX1.
TreeFami TF315132.

Miscellaneous databases

ChiTaRSi Taf11. mouse.
NextBioi 327906.
PROi Q99JX1.
SOURCEi Search...

Gene expression databases

Bgeei Q99JX1.
Genevestigatori Q99JX1.

Family and domain databases

Gene3Di 1.10.20.10. 1 hit.
InterProi IPR009072. Histone-fold.
IPR006809. TAFII28.
[Graphical view ]
PANTHERi PTHR13218. PTHR13218. 1 hit.
Pfami PF04719. TAFII28. 1 hit.
[Graphical view ]
SUPFAMi SSF47113. SSF47113. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "The transcriptional landscape of the mammalian genome."
    Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J.
    , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
    Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: C57BL/6J.
    Tissue: Embryo.
  2. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: FVB/N.
    Tissue: Mammary tumor.

Entry informationi

Entry nameiTAF11_MOUSE
AccessioniPrimary (citable) accession number: Q99JX1
Secondary accession number(s): Q3UZH1, Q9CT98
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 12, 2005
Last sequence update: June 1, 2001
Last modified: July 9, 2014
This is version 100 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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