Skip Header

You are using a version of Internet Explorer that may not display all features of this website. Please upgrade to a modern browser.
Contribute Send feedback
Read comments (?) or add your own

Q99JX1 (TAF11_MOUSE) Reviewed, UniProtKB/Swiss-Prot

Last modified July 9, 2014. Version 100. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Transcription initiation factor TFIID subunit 11
Alternative name(s):
TFIID subunit p30-beta
Transcription initiation factor TFIID 28 kDa subunit
Short name=TAF(II)28
Short name=TAFII-28
Short name=TAFII28
Gene names
Name:Taf11
OrganismMus musculus (Mouse) [Reference proteome]
Taxonomic identifier10090 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus

Protein attributes

Sequence length211 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Function

Core TAFII present in both of the previously described TFIID species which either lack or contain TAFII30 (TFIID alpha and TFIID beta respectively) By similarity.

Subunit structure

TFIID is composed of TATA binding protein (TBP) and a number of TBP-associated factors (TAFs) By similarity.

Subcellular location

Nucleus By similarity.

Domain

TBP and TAFII18 bind to distinct domains of TAFII28 By similarity.

Sequence similarities

Belongs to the TAF11 family.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 211211Transcription initiation factor TFIID subunit 11
PRO_0000118903

Amino acid modifications

Modified residue11N-acetylmethionine By similarity

Sequences

Sequence LengthMass (Da)Tools
Q99JX1 [UniParc].

Last modified June 1, 2001. Version 1.
Checksum: A19D3778C07513E7

FASTA21123,333
        10         20         30         40         50         60 
MDNLGESPTD KGGEPGESEE TRATPGALVA ADTEGIPEET DRDGDADLKE AAAEESELKS 

        70         80         90        100        110        120 
QDVSDVTAAE RENSSLLTPA AKKLKLDIKD KKEKKQKVDE DEIQKMQILV SSFSEEQLNR 

       130        140        150        160        170        180 
YEMYRRSAFP KAAIKRLIQS ITGTSVSQNV VIAMSGISKV FVGEVVEEAL DVCEKWGETP 

       190        200        210 
PLQPKHMREA VRRLKSKGQI PNSKHKKITF F 

« Hide

References

[1]"The transcriptional landscape of the mammalian genome."
Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J. expand/collapse author list , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Strain: C57BL/6J.
Tissue: Embryo.
[2]"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
The MGC Project Team
Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Strain: FVB/N.
Tissue: Mammary tumor.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AK004168 mRNA. Translation: BAB23203.1.
AK050689 mRNA. Translation: BAC34381.1.
AK133851 mRNA. Translation: BAE21886.1.
BC005603 mRNA. Translation: AAH05603.1.
CCDSCCDS28571.1.
RefSeqNP_081112.1. NM_026836.2.
XP_006524924.1. XM_006524861.1.
XP_006524925.1. XM_006524862.1.
XP_006536847.1. XM_006536784.1.
XP_006536848.1. XM_006536785.1.
UniGeneMm.267998.

3D structure databases

ProteinModelPortalQ99JX1.
SMRQ99JX1. Positions 113-201.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

IntActQ99JX1. 1 interaction.

PTM databases

PhosphoSiteQ99JX1.

Proteomic databases

PRIDEQ99JX1.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSMUST00000025057; ENSMUSP00000025057; ENSMUSG00000024218.
ENSMUST00000114848; ENSMUSP00000110498; ENSMUSG00000024218.
GeneID68776.
KEGGmmu:68776.
UCSCuc008bpu.1. mouse.

Organism-specific databases

CTD6882.
MGIMGI:1916026. Taf11.

Phylogenomic databases

eggNOGCOG5251.
GeneTreeENSGT00390000013228.
HOGENOMHOG000006355.
HOVERGENHBG079228.
InParanoidQ99JX1.
KOK03135.
OMAKHKKITF.
OrthoDBEOG7VDXQT.
PhylomeDBQ99JX1.
TreeFamTF315132.

Gene expression databases

BgeeQ99JX1.
GenevestigatorQ99JX1.

Family and domain databases

Gene3D1.10.20.10. 1 hit.
InterProIPR009072. Histone-fold.
IPR006809. TAFII28.
[Graphical view]
PANTHERPTHR13218. PTHR13218. 1 hit.
PfamPF04719. TAFII28. 1 hit.
[Graphical view]
SUPFAMSSF47113. SSF47113. 1 hit.
ProtoNetSearch...

Other

ChiTaRSTaf11. mouse.
NextBio327906.
PROQ99JX1.
SOURCESearch...

Entry information

Entry nameTAF11_MOUSE
AccessionPrimary (citable) accession number: Q99JX1
Secondary accession number(s): Q3UZH1, Q9CT98
Entry history
Integrated into UniProtKB/Swiss-Prot: April 12, 2005
Last sequence update: June 1, 2001
Last modified: July 9, 2014
This is version 100 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

MGD cross-references

Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot