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Protein

SWIRM domain-containing protein YOR338W

Gene

YOR338W

Organism
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

Complete GO annotation...

Keywords - Biological processi

Stress response

Enzyme and pathway databases

BioCyciYEAST:G3O-33813-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
SWIRM domain-containing protein YOR338W
Gene namesi
Ordered Locus Names:YOR338W
ORF Names:O6265
OrganismiSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Taxonomic identifieri559292 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces
Proteomesi
  • UP000002311 Componenti: Chromosome XV

Organism-specific databases

EuPathDBiFungiDB:YOR338W.
SGDiS000005865. YOR338W.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 363363SWIRM domain-containing protein YOR338WPRO_0000245288Add
BLAST

PTM databases

iPTMnetiQ99326.

Expressioni

Inductioni

By heat stress.1 Publication

Interactioni

Protein-protein interaction databases

BioGridi34721. 17 interactions.
DIPiDIP-2679N.
IntActiQ99326. 1 interaction.
MINTiMINT-1651835.

Structurei

3D structure databases

ProteinModelPortaliQ99326.
SMRiQ99326. Positions 271-356.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini266 – 36398SWIRMPROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 SWIRM domain.PROSITE-ProRule annotation

Phylogenomic databases

GeneTreeiENSGT00530000068526.
HOGENOMiHOG000248211.
InParanoidiQ99326.
OrthoDBiEOG7BCNNC.

Family and domain databases

InterProiIPR009057. Homeodomain-like.
IPR007526. SWIRM.
[Graphical view]
PfamiPF04433. SWIRM. 1 hit.
[Graphical view]
SUPFAMiSSF46689. SSF46689. 1 hit.
PROSITEiPS50934. SWIRM. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q99326-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLDNMQFHSP APEHPQLNGG INKIPASHKI GYKLNQQVQR LAVVRNNIEE
60 70 80 90 100
RLNSMESSHG QISDSSVVRA IDASIDDFLI PSPPLSPKLR QCPIISQPQL
110 120 130 140 150
VNVESDHREL IMLTPVWEAG LNSQKYNHNT RNFLSQYSFF RDMKTTKRIP
160 170 180 190 200
NKENRKLKVV KSVVNSEALP KRRRYDRKIK RRSRELYEDD GNRSENYDEE
210 220 230 240 250
SAQEVPVRSV TPIRQVKRSL HTISSPLASQ GVVNNVPKYI PSMSWEKLPD
260 270 280 290 300
YSPPLHTLPN SNNKVLKVEW KGSPMDLNHD PLKQRLHPAE LVLAQILRLP
310 320 330 340 350
CDLYLDSKRR FFLEKVHRFK KGLPFRRTDA QKACRIDVNK ASRLFAAFEK
360
VGWLQDKHFE KYL
Length:363
Mass (Da):42,109
Last modified:November 1, 1996 - v1
Checksum:iA0ECC4732C854F61
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X95720 Genomic DNA. Translation: CAA65026.1.
Z75246 Genomic DNA. Translation: CAA99661.1.
Z49821 Genomic DNA. Translation: CAA89983.1.
BK006948 Genomic DNA. Translation: DAA11099.1.
PIRiS67247.
RefSeqiNP_014983.1. NM_001183758.1.

Genome annotation databases

EnsemblFungiiYOR338W; YOR338W; YOR338W.
GeneIDi854516.
KEGGisce:YOR338W.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X95720 Genomic DNA. Translation: CAA65026.1.
Z75246 Genomic DNA. Translation: CAA99661.1.
Z49821 Genomic DNA. Translation: CAA89983.1.
BK006948 Genomic DNA. Translation: DAA11099.1.
PIRiS67247.
RefSeqiNP_014983.1. NM_001183758.1.

3D structure databases

ProteinModelPortaliQ99326.
SMRiQ99326. Positions 271-356.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi34721. 17 interactions.
DIPiDIP-2679N.
IntActiQ99326. 1 interaction.
MINTiMINT-1651835.

PTM databases

iPTMnetiQ99326.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblFungiiYOR338W; YOR338W; YOR338W.
GeneIDi854516.
KEGGisce:YOR338W.

Organism-specific databases

EuPathDBiFungiDB:YOR338W.
SGDiS000005865. YOR338W.

Phylogenomic databases

GeneTreeiENSGT00530000068526.
HOGENOMiHOG000248211.
InParanoidiQ99326.
OrthoDBiEOG7BCNNC.

Enzyme and pathway databases

BioCyciYEAST:G3O-33813-MONOMER.

Miscellaneous databases

NextBioi976879.
PROiQ99326.

Family and domain databases

InterProiIPR009057. Homeodomain-like.
IPR007526. SWIRM.
[Graphical view]
PfamiPF04433. SWIRM. 1 hit.
[Graphical view]
SUPFAMiSSF46689. SSF46689. 1 hit.
PROSITEiPS50934. SWIRM. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Nucleotide sequence analysis of a 40 kb segment on the right arm of yeast chromosome XV reveals 18 open reading frames including a new pyruvate kinase and three homologues to chromosome I genes."
    Purnelle B., Goffeau A.
    Yeast 12:1475-1481(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: ATCC 96604 / S288c / FY1679.
  2. "The nucleotide sequence of Saccharomyces cerevisiae chromosome XV."
    Dujon B., Albermann K., Aldea M., Alexandraki D., Ansorge W., Arino J., Benes V., Bohn C., Bolotin-Fukuhara M., Bordonne R., Boyer J., Camasses A., Casamayor A., Casas C., Cheret G., Cziepluch C., Daignan-Fornier B., Dang V.-D.
    , de Haan M., Delius H., Durand P., Fairhead C., Feldmann H., Gaillon L., Galisson F., Gamo F.-J., Gancedo C., Goffeau A., Goulding S.E., Grivell L.A., Habbig B., Hand N.J., Hani J., Hattenhorst U., Hebling U., Hernando Y., Herrero E., Heumann K., Hiesel R., Hilger F., Hofmann B., Hollenberg C.P., Hughes B., Jauniaux J.-C., Kalogeropoulos A., Katsoulou C., Kordes E., Lafuente M.J., Landt O., Louis E.J., Maarse A.C., Madania A., Mannhaupt G., Marck C., Martin R.P., Mewes H.-W., Michaux G., Paces V., Parle-McDermott A.G., Pearson B.M., Perrin A., Pettersson B., Poch O., Pohl T.M., Poirey R., Portetelle D., Pujol A., Purnelle B., Ramezani Rad M., Rechmann S., Schwager C., Schweizer M., Sor F., Sterky F., Tarassov I.A., Teodoru C., Tettelin H., Thierry A., Tobiasch E., Tzermia M., Uhlen M., Unseld M., Valens M., Vandenbol M., Vetter I., Vlcek C., Voet M., Volckaert G., Voss H., Wambutt R., Wedler H., Wiemann S., Winsor B., Wolfe K.H., Zollner A., Zumstein E., Kleine K.
    Nature 387:98-102(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 204508 / S288c.
  3. Cited for: GENOME REANNOTATION.
    Strain: ATCC 204508 / S288c.
  4. "Sequence of 29 kb around the PDR10 locus on the right arm of Saccharomyces cerevisiae chromosome XV: similarity to part of chromosome I."
    Parle-McDermott A.G., Hand N.J., Goulding S.E., Wolfe K.H.
    Yeast 12:999-1004(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1-98.
  5. "Response of genes associated with mitochondrial function to mild heat stress in yeast Saccharomyces cerevisiae."
    Sakaki K., Tashiro K., Kuhara S., Mihara K.
    J. Biochem. 134:373-384(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: INDUCTION BY HEAT.
  6. "A multidimensional chromatography technology for in-depth phosphoproteome analysis."
    Albuquerque C.P., Smolka M.B., Payne S.H., Bafna V., Eng J., Zhou H.
    Mol. Cell. Proteomics 7:1389-1396(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].

Entry informationi

Entry nameiYO338_YEAST
AccessioniPrimary (citable) accession number: Q99326
Secondary accession number(s): D6W333, Q06855
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 11, 2006
Last sequence update: November 1, 1996
Last modified: May 11, 2016
This is version 96 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Yeast
    Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD
  3. Yeast chromosome XV
    Yeast (Saccharomyces cerevisiae) chromosome XV: entries and gene names

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.