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Protein

RNA-directed RNA polymerase

Gene
N/A
Organism
Boolarra virus (BoV)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

RNA-dependent RNA polymerase which replicates the viral genome composed of 2 RNA segments, RNA1 AND RNA2.Curated

Catalytic activityi

Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1).

GO - Molecular functioni

Keywordsi

Molecular functionNucleotidyltransferase, RNA-directed RNA polymerase, Transferase

Names & Taxonomyi

Protein namesi
Recommended name:
RNA-directed RNA polymerase (EC:2.7.7.48)
Short name:
RdRp
Alternative name(s):
RNA replicase
Short name:
Protein A
OrganismiBoolarra virus (BoV)
Taxonomic identifieri12286 [NCBI]
Taxonomic lineageiVirusesssRNA virusesssRNA positive-strand viruses, no DNA stageNodaviridaeAlphanodavirus
Virus hostiHepialidae (ghost moths) [TaxID: 41021]
Proteomesi
  • UP000204043 Componenti: Genome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002224451 – 998RNA-directed RNA polymeraseAdd BLAST998

Proteomic databases

PRIDEiQ992J0

Structurei

3D structure databases

ProteinModelPortaliQ992J0
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the nodaviridae RNA polymerase family.Curated

Family and domain databases

InterProiView protein in InterPro
IPR020237 vRNA-dir_pol_C
PfamiView protein in Pfam
PF17501 Viral_RdRp_C, 1 hit
ProDomiView protein in ProDom or Entries sharing at least one domain
PD029982 RNA-dir_pol_nodavirus, 1 hit

Sequencei

Sequence statusi: Complete.

Q992J0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTIKIILGEH QITRTELLGG IVIVSGCGAV AYCISKFWGY GAIAPYPQSG
60 70 80 90 100
GNRVTRALQR AVIDKTKTPI KTHFYPLDSL RTVTPRRASD NGHAVSGAVR
110 120 130 140 150
DAARRLINES IETVGGSKFE LNPNPNSTMG PRNHFHFAVG DLAQNFRDDQ
160 170 180 190 200
PAADAFIVGV DVDYYITEPD VLLEHMRPLV LHTFNPKKVS GFDADSPFTI
210 220 230 240 250
NNNLVEYKVS GGAAWVHPVW DWCEAGEFIA SRVRSSWFEW LLQLPLRCLG
260 270 280 290 300
LERVGYHKIH HCRPWTDCPD RALVYTIPQH TVWRFTWIDT EIHTRKLKRI
310 320 330 340 350
TYQDNTKPGW NRLEHVSDNN QLLVSIGREG EHMQITIEKD KLEMLSGLGA
360 370 380 390 400
TQSVNARLIG MGHKDPLYTS MIVQYYTGKK VVLSVAPTVY RPTMPRVHWP
410 420 430 440 450
VTSDADVPEV SARQYTKPII SDCMMMPMIK RWETMSESIE RRVTFVANNK
460 470 480 490 500
KPSDAVAKIA AEFVSLMNGP FIDLEPLTIE ETVERLNKPS QQLQLRAVFE
510 520 530 540 550
IMGVEPRQVI ESFNKNEPGM KSSRIISAFP DILFIVKVSR YTLAYSDAVL
560 570 580 590 600
HAEHNQHWYY PGRTPVGITD GVCEFVSDCD GQVIETDFSN LDGRVSGWMQ
610 620 630 640 650
RNIAQKAMVQ AFRAEYRDEI ISFMDTIINC PAKAKRFGFR YEPGMGVKSG
660 670 680 690 700
SPTTTPHNTQ YNACVEYTAL KFEYPDANPE DLFSLLGPKC GDDGLARATI
710 720 730 740 750
QKTINRAAKC YGLELKVEKY NPEVGLCFLS RVFVDPLNTP TTIQDPLRTL
760 770 780 790 800
RKLHITTRDP TIPIADAACD RVEGYLCTDA HTPLISEYCR MVQRLYGPKT
810 820 830 840 850
STRDVREARR SRNKEKPYWL TCDGSWPQHP QDALLMKQIV VSRTGIDEDT
860 870 880 890 900
VDKLIGRFAA MKDVWEPITL ESEESKAAQT IDEEGVAPGS VDESLLKLND
910 920 930 940 950
AKQTRSNSGT SGPHTKGGGS GTGNELPRST KQRAKGPRQS AGLPKQGKAN
960 970 980 990
SKPNGNVAAG QAQHGGIPRG KTPSGGKTNA RRAPPKAGAQ PGAPTNPK
Length:998
Mass (Da):111,204
Last modified:June 1, 2001 - v1
Checksum:i7FAFFE4FC7329253
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF329080 Genomic RNA Translation: AAK15751.1
RefSeqiNP_689439.1, NC_004142.1

Genome annotation databases

GeneIDi956656
KEGGivg:956656

Similar proteinsi

Entry informationi

Entry nameiRDRP_BOOLV
AccessioniPrimary (citable) accession number: Q992J0
Entry historyiIntegrated into UniProtKB/Swiss-Prot: April 16, 2002
Last sequence update: June 1, 2001
Last modified: May 23, 2018
This is version 38 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

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