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Q98ZP7 (Q98ZP7_SV40) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 68. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
OrganismSimian virus 40 (SV40) EMBL AAK29054.1
Taxonomic identifier10633 [NCBI]
Taxonomic lineageVirusesdsDNA viruses, no RNA stagePolyomaviridaePolyomavirus
Virus hostMacaca (macaques) [TaxID: 9539]

Protein attributes

Sequence length537 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Sequence similarities

Contains SF3 helicase domain. SAAS SAAS014015

Contains SFhelicase domain. SAAS SAAS014015

Sequences

Sequence LengthMass (Da)Tools
Q98ZP7 [UniParc].

Last modified June 1, 2001. Version 1.
Checksum: 3337EFB55B957FA1

FASTA53761,675
        10         20         30         40         50         60 
MDKVLNREES LQLMDLLGLE RSAWGNIPLM RKAYLKKCKE FHPDKGGDEE KMKKMNTLYK 

        70         80         90        100        110        120 
KMEDGVKYAH QPDFGGFWDA TEIPTYGTDE WEQWWNAFNE ENLFCSEEMP SSDDEATADS 

       130        140        150        160        170        180 
QHSTPPKKKR KVEDPKDFPS ELLSFLSHAV FSNRTLACFA IYTTKEKAAL LYKKIMEKYS 

       190        200        210        220        230        240 
VTFISRHNSY NHNILFFLTP HRHRVSAINN YAQKLCTFSF LICKGVNKEY LMYSALTRDP 

       250        260        270        280        290        300 
FSVIEESLPG GLKEHDFNPE EAEETKQVSW KLVTEYAMET KCDDVLLLLG MYLEFQYSFE 

       310        320        330        340        350        360 
MCLKCIKKEQ PSHYKYHEKH YANAAIFADS KNQKTICQQA VDTVLAKKRV DSLQLTREQM 

       370        380        390        400        410        420 
LTNRFNDLLD RMDIMFGSTG SADIEEWMAG VAWLHCLLPK MDSVVYDFLK CMVYNIPKKR 

       430        440        450        460        470        480 
YWLFKGPIDS GKTTLAAALL ELCGGKALNV NLPLDRLNFE LGVAIDQFLV VFEDVKGTGG 

       490        500        510        520        530 
ESRDLPSGQG INNLSHITSV EVLLALKNLP HLPLNLKHKM NAIVVVNLFI AAYNGYK 

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References

[1]"Solution structure of the origin DNA-binding domain of SV40 T-antigen."
Luo X., Sanford D.G., Bullock P.A., Bachovchin W.W.
Nat. Struct. Biol. 3:1034-1039(1996) [PubMed] [Europe PMC] [Abstract]
Cited for: STRUCTURE BY NMR OF 131-260.
[2]"Complete DNA sequence of SV40-GM00637H, defective variant 12."
Lednicky J.A., Butel J.S., Lewis A.M.
Submitted (FEB-2001) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: GM00637H EMBL AAK29054.1.
[3]"Structure of the origin-binding domain of simian virus 40 large T antigen bound to DNA."
Bochkareva E., Martynowski D., Seitova A., Bochkarev A.
EMBO J. 25:5961-5969(2006) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (1.50 ANGSTROMS) OF 131-259.
[4]"The crystal structure of the SV40 T-antigen origin binding domain in complex with DNA."
Meinke G., Phelan P., Moine S., Bochkareva E., Bochkarev A., Bullock P.A., Bohm A.
PLoS Biol. 5:e23-e23(2007) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (2.40 ANGSTROMS) OF 131-260.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AF345345 Genomic DNA. Translation: AAK29054.1.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
2IF9X-ray2.59A/B131-260[»]
2IPRX-ray1.50A/B131-259[»]
2ITJX-ray2.50A/B131-259[»]
2ITLX-ray1.65A/B131-259[»]
2NL8X-ray2.30A131-259[»]
2NTCX-ray2.40A/B131-260[»]
2TBDNMR-A131-260[»]
ProteinModelPortalQ98ZP7.
SMRQ98ZP7. Positions 7-117, 131-260, 265-509.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Family and domain databases

Gene3D1.10.10.510. 1 hit.
1.10.287.110. 1 hit.
3.40.50.300. 1 hit.
InterProIPR001623. DnaJ_domain.
IPR014015. Helicase_SF3_DNA-vir.
IPR010932. Lg_T_Ag_Polyomavir_C.
IPR027417. P-loop_NTPase.
IPR003133. T_Ag_DNA-bd.
IPR017910. Znf_lg_T-Ag_D1-typ.
[Graphical view]
PfamPF00226. DnaJ. 1 hit.
PF06431. Polyoma_lg_T_C. 1 hit.
PF02217. T_Ag_DNA_bind. 1 hit.
[Graphical view]
SMARTSM00271. DnaJ. 1 hit.
[Graphical view]
SUPFAMSSF46565. SSF46565. 1 hit.
SSF52540. SSF52540. 1 hit.
PROSITEPS50076. DNAJ_2. 1 hit.
PS51206. SF3_HELICASE_1. 1 hit.
PS51287. T_AG_OBD. 1 hit.
PS51341. ZF_LTAG_D1. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ98ZP7_SV40
AccessionPrimary (citable) accession number: Q98ZP7
Entry history
Integrated into UniProtKB/TrEMBL: June 1, 2001
Last sequence update: June 1, 2001
Last modified: April 16, 2014
This is version 68 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)