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Q98TU2 (Q98TU2_DANRE) Unreviewed, UniProtKB/TrEMBL

Last modified January 25, 2012. Version 78. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Eomesa protein EMBL AAI54206.1
Submitted name:
Eomesodermin homolog a Ensembl ENSDARP00000007733 Ensembl ENSDARP00000111994 EMBL AAH67719.1
Submitted name:
T-box transcription factor eomesodermin EMBL AAG52884.1
Gene names
Name:eomesa ZFIN ZDB-GENE-001228-1 Ensembl ENSDARP00000007733 Ensembl ENSDARP00000111994 EMBL AAI54206.1
Synonyms:eomes ZFIN ZDB-GENE-001228-1
OrganismDanio rerio (Zebrafish) (Brachydanio rerio) EMBL AAG52884.1
Taxonomic identifier7955 [NCBI]
Taxonomic lineageEukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Actinopterygii › Neopterygii › Teleostei › Ostariophysi › Cypriniformes › Cyprinidae › Danio

Protein attributes

Sequence length661 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Sequence similarities

Contains 1 T-box DNA-binding domain. SAAS SAAS008967

Sequences

Sequence LengthMass (Da)Tools
Q98TU2 [UniParc].

Last modified June 1, 2001. Version 1.
Checksum: 0FE1AEDFD083552A

FASTA66172,009
        10         20         30         40         50         60 
MQLESILPGA SVNLPKTFYN LSSSSESTNN SPGSTQIDFQ DMDRTDSEQS SGAKKFLMDD 

        70         80         90        100        110        120 
ADSESFTGTK AAAAATAAPD ARKSSPVIGA DDELSSTRRY NIDDLGTDRY FISSSQPSSD 

       130        140        150        160        170        180 
VANPCSLFPY GGQTGSVYSG SNGSRYSSSL HYGSVLPPAG FSSAVCASRS QFGGGYQFGQ 

       190        200        210        220        230        240 
GPGCLYPSYP GPGSSLSSMP IPGSGSAARA QVYLCNRPLW LKFHRHQTEM IITKQGRRMF 

       250        260        270        280        290        300 
PFLSFNITGL NLTAHYNVFV EIVLADPNHW RFQGGKWVTC GKADNNMQGN KVYVHPESPN 

       310        320        330        340        350        360 
TGAHWMRQEI SFGKLKLTNN KGANNNNTQM IVLQSLHKYQ PRLHIVEVTE DGVEDMSSEA 

       370        380        390        400        410        420 
KTQTFTFPEN QFIAVTAYQN TDITQLKIDH NPFAKGFRDN YDSMYTAPES DRLTPSPTDS 

       430        440        450        460        470        480 
PRSHQIVPGA RYAMQPFFQD QFVNNLPQNH RFYGSERAVP QTNGLLSPQS EDSAAGSASA 

       490        500        510        520        530        540 
QRWFVGPVQQ SGATTKLDLS YDSEYSASSL LPYGIKPLPL QSPHALGYYP DSAFASMAAG 

       550        560        570        580        590        600 
WSSRSSYQRK MTTGLPWSPR PSPPAYTDDL LSSKDKLQDE NSTAAPTAAS TGPWMEAPPV 

       610        620        630        640        650        660 
LKSVDSGDTS GYSMACKRRR VSPGGSSTDA SPTIKCEDLS SEEYNKESHK AMGYYAFYTS 


P

« Hide

References

« Hide 'large scale' references
[1]"Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences."
Mammalian Gene Collection Program Team
Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., Moore T., Max S.I. expand/collapse author list , Wang J., Hsieh F., Diatchenko L., Marusina K., Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.
Proc. Natl. Acad. Sci. U.S.A. 99:16899-16903(2002) [PubMed: 12477932] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Tissue: Ovary EMBL AAI54206.1.
[2]"The maternally expressed zebrafish T-box gene eomesodermin regulates organizer formation."
Bruce A.E., Howley C., Zhou Y., Vickers S.L., Silver L.M., King M.L., Ho R.K.
Development 130:5503-5517(2003) [PubMed: 14530296] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
[3]NIH MGC Project
Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Tissue: Ovary EMBL AAI54206.1.
[4]NIH - Zebrafish Gene Collection (ZGC) project
Submitted (MAR-2004) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Tissue: Embryo EMBL AAH67719.1.
[5]"The genomic sequence of Danio rerio."
The Danio rerio Sequencing Project at the Sanger Institute
Submitted (JUL-2010) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Tuebingen Ensembl ENSDARP00000007733 Ensembl ENSDARP00000111994.
[6]Ensembl
Submitted (JUL-2011) to UniProtKB
Cited for: IDENTIFICATION.
Strain: Tuebingen Ensembl ENSDARP00000007733 Ensembl ENSDARP00000111994.
[7]"Novel expression of zebrafish eomesodermin."
Howley C.E., Bruce A.E.E., Ho R.K.
Submitted (DEC-2000) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CABZ01083906 Genomic DNA. No translation available.
CABZ01083907 Genomic DNA. No translation available.
AF329830 mRNA. Translation: AAG52884.1.
BC067719 mRNA. Translation: AAH67719.1.
BC154205 mRNA. Translation: AAI54206.1.
IPIIPI00497303.
RefSeqNP_571754.3. NM_131679.3.
UniGeneDr.83042.

3D structure databases

HSSPHSSP built from PDB template 1XBR based on UniProtKB P24781.
ProteinModelPortalQ98TU2.
ModBaseSearch...

Protein-protein interaction databases

STRINGQ98TU2.

Proteomic databases

PRIDEQ98TU2.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSDART00000007206; ENSDARP00000007733; ENSDARG00000006640.
ENSDART00000122257; ENSDARP00000111994; ENSDARG00000006640.
GeneID64603.
KEGGdre:64603.

Organism-specific databases

CTD64603.
ZFINZDB-GENE-001228-1. eomesa.

Phylogenomic databases

eggNOGfiNOG14653.
HOGENOMHBG443799.
HOVERGENHBG000578.
OMAGFRAHVY.
OrthoDBEOG45QHD6.
PhylomeDBQ98TU2.

Gene expression databases

ArrayExpressQ98TU2.
BgeeQ98TU2.

Family and domain databases

InterProIPR008967. p53-like_TF_DNA-bd.
IPR001699. TF_T-box.
IPR018186. TF_T-box_CS.
[Graphical view]
Gene3DG3DSA:2.60.40.820. TF_T-box. 1 hit.
KOK10173.
PANTHERPTHR11267. TF_T-box. 1 hit.
PfamPF00907. T-box. 1 hit.
[Graphical view]
PRINTSPR00937. TBOX.
SMARTSM00425. TBOX. 1 hit.
[Graphical view]
SUPFAMSSF49417. P53_like_DNA_bnd. 1 hit.
PROSITEPS01283. TBOX_1. 1 hit.
PS01264. TBOX_2. 1 hit.
PS50252. TBOX_3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ98TU2_DANRE
AccessionPrimary (citable) accession number: Q98TU2
Entry history
Integrated into UniProtKB/TrEMBL: June 1, 2001
Last sequence update: June 1, 2001
Last modified: January 25, 2012
This is version 78 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry info