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Protein

Selenoprotein Pb

Gene

sepp1b

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

Might be responsible for some of the extracellular antioxidant defense properties of selenium.By similarity

Names & Taxonomyi

Protein namesi
Recommended name:
Selenoprotein Pb
Short name:
zSelPb
Gene namesi
Name:sepp1b
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)Imported
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio
Proteomesi
  • UP000000437 Componenti: Unplaced

Organism-specific databases

ZFINiZDB-GENE-030311-2. sepp1b.

Subcellular locationi

  • Secreted By similarity

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Secreted

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 18Sequence analysisAdd BLAST18
ChainiPRO_000002230119 – 265Selenoprotein PbAdd BLAST247

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Glycosylationi28N-linked (GlcNAc...)Sequence analysis1
Glycosylationi88N-linked (GlcNAc...)Sequence analysis1
Glycosylationi178N-linked (GlcNAc...)Sequence analysis1
Glycosylationi184N-linked (GlcNAc...)Sequence analysis1
Glycosylationi207N-linked (GlcNAc...)Sequence analysis1

Keywords - PTMi

Glycoprotein

Proteomic databases

PaxDbiQ98SV0.

Interactioni

Protein-protein interaction databases

STRINGi7955.ENSDARP00000100393.

Family & Domainsi

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi216 – 264His-richAdd BLAST49

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiENOG410IYG7. Eukaryota.
ENOG4111JK7. LUCA.
HOVERGENiHBG056814.
InParanoidiQ98SV0.
PhylomeDBiQ98SV0.

Family and domain databases

Gene3Di3.40.30.10. 1 hit.
InterProiIPR007671. Selenoprotein-P_N.
IPR012336. Thioredoxin-like_fold.
[Graphical view]
PfamiPF04592. SelP_N. 1 hit.
[Graphical view]
SUPFAMiSSF52833. SSF52833. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q98SV0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MQALWPLLLS ALPALLGASS LFVEKESNGS RICKPAPQWE IDGKTPMKEL
60 70 80 90 100
LGNVVVVALL KASUHFCLTQ AARLGDLRDK LANGGLTNIS FMVVNEQDSQ
110 120 130 140 150
SRAMYWELKR RTAQDIPVYQ QSPLQNDVWE ILEGDKDDFL VYDRCGYLTF
160 170 180 190 200
HIVLPFSFLH YPYIEAAIRA TYHKNMCNCS LNANFSISES SDSTKNDPAG
210 220 230 240 250
ENNQRPNSTE PVTAAHHHHH QQHEPHHHHH NPYPNSHKKS GDSDVTGKPK
260
EPPHHSHQEH VHNHR
Length:265
Mass (Da):30,040
Last modified:February 26, 2008 - v3
Checksum:iD858FC5CD7EDEB13
GO

Non-standard residue

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Non-standard residuei64Selenocysteine1 Publication1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF322072 mRNA. Translation: AAG53689.1.
UniGeneiDr.8516.

Keywords - Coding sequence diversityi

Selenocysteine

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF322072 mRNA. Translation: AAG53689.1.
UniGeneiDr.8516.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi7955.ENSDARP00000100393.

Proteomic databases

PaxDbiQ98SV0.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Organism-specific databases

ZFINiZDB-GENE-030311-2. sepp1b.

Phylogenomic databases

eggNOGiENOG410IYG7. Eukaryota.
ENOG4111JK7. LUCA.
HOVERGENiHBG056814.
InParanoidiQ98SV0.
PhylomeDBiQ98SV0.

Miscellaneous databases

PROiQ98SV0.

Family and domain databases

Gene3Di3.40.30.10. 1 hit.
InterProiIPR007671. Selenoprotein-P_N.
IPR012336. Thioredoxin-like_fold.
[Graphical view]
PfamiPF04592. SelP_N. 1 hit.
[Graphical view]
SUPFAMiSSF52833. SSF52833. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiSELPB_DANRE
AccessioniPrimary (citable) accession number: Q98SV0
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 11, 2003
Last sequence update: February 26, 2008
Last modified: November 11, 2015
This is version 74 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.