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Q98P39 (Q98P39_RHILO) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 71. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:mll9625 EMBL BAB54816.1
Encoded onPlasmid pMLb Ref.1 EMBL BAB54816.1
OrganismRhizobium loti (strain MAFF303099) (Mesorhizobium loti) [Complete proteome] [HAMAP] EMBL BAB54816.1
Taxonomic identifier266835 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesPhyllobacteriaceaeMesorhizobium

Protein attributes

Sequence length883 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL BAB54816.1
   Technical termComplete proteome
Plasmid EMBL BAB54816.1
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
Q98P39 [UniParc].

Last modified October 1, 2001. Version 1.
Checksum: EB0DB180BF8A9CDC

FASTA88397,530
        10         20         30         40         50         60 
MASDKLTTYK AKRDFKKTQE PSGQGSVKPS NRRRFVIQKH DATRLHYDLR LELGGVFKSW 

        70         80         90        100        110        120 
AVTRGPSLDP HDKRLAVEVE DHPLDYGDFE GTIPKGQYGG GTVMLWDRGY WEPEGKNSPE 

       130        140        150        160        170        180 
QALAKGDFKF TLEGERLHGS FVLVRMANDR ERGKRTNWLL IKHRDEYAVE TNGAAILDKN 

       190        200        210        220        230        240 
DTSVASGRKM EAIAAGKGRS PKPFMLQGGK AEADAVWDSR TGLAAQERKT NIRAKRKKHG 

       250        260        270        280        290        300 
TVTAADLPDF IAPQLCQTLA RPPSESGWLH EIKFDGYRIQ MRVLGGEAIL QTRKGLDWTA 

       310        320        330        340        350        360 
RYRAIARAAG NLPDAIIDGE ICALDENGAP DFAALQAALA EGKTDALVYF AFDLLFEGAE 

       370        380        390        400        410        420 
DLRVLPLSKR KARLRQFLTD TGEDDRIRFV EHFETGGEAV LRSACRLSLE GIVSKRADAP 

       430        440        450        460        470        480 
YVSGRTETWA KSKCRAGHEV VIGAYATTNG KFRSLLVGVY RGDHFVYVGR VGTGYGAAKV 

       490        500        510        520        530        540 
RDLLPKLKAA ATRKSPFTGI GAPKNEPGVV WLKPELVAEI EFAGWTSDGL VRQAAFKGLR 

       550        560        570        580        590        600 
EDKPAEEVEA DKPASPEKTK VPQPREPTAA AKPSRSRGKV DVMGVLISNP DKPLWPDAND 

       610        620        630        640        650        660 
GIPVTKEDLA RYYEAVGPWL IEHIRGRPCS IIRAPDGFGG EQFFQRHAMP GTSNLLELVE 

       670        680        690        700        710        720 
VFGDKKPYLQ IDRVEGLAAV AQIGALELHP WNCEPQQPEV PGRLVFDLDP GPDVPFKTVV 

       730        740        750        760        770        780 
EAAKEMRARL DDLGLVSFCK TTGGKGLHVV TPLAVTKRSK LTWPEAKGFA HDVCLQMARD 

       790        800        810        820        830        840 
NPALYLTKMA KNQRIGRIFL DYLRNDRMAT AVAPLSPRAR PGATVSMPLT WAQVKTDLDP 

       850        860        870        880 
KRFTLRTVPG LLAKSTAWKD YGDGHRLLEA SIKRLARSMR RAA 

« Hide

References

[1]"Complete genome structure of the nitrogen-fixing symbiotic bacterium Mesorhizobium loti."
Kaneko T., Nakamura Y., Sato S., Asamizu E., Kato T., Sasamoto S., Watanabe A., Idesawa K., Ishikawa A., Kawashima K., Kimura T., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A., Mochizuki Y., Nakayama S. expand/collapse author list , Nakazaki N., Shimpo S., Sugimoto M., Takeuchi C., Yamada M., Tabata S.
DNA Res. 7:331-338(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: MAFF303099 EMBL BAB54816.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AP003017 Genomic DNA. Translation: BAB54816.1.
RefSeqNP_109477.1. NC_002682.1.

3D structure databases

ProteinModelPortalQ98P39.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING266835.mll9625.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaBAB54816; BAB54816; BAB54816.
GeneID1224449.
KEGGmlo:mll9625.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000222509.
KOK01971.
OMARTETWAK.
OrthoDBEOG661H49.

Enzyme and pathway databases

BioCycMLOT266835:GJ9L-7225-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ98P39_RHILO
AccessionPrimary (citable) accession number: Q98P39
Entry history
Integrated into UniProtKB/TrEMBL: October 1, 2001
Last sequence update: October 1, 2001
Last modified: May 14, 2014
This is version 71 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)