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Protein
Submitted name:

ATP-dependent DNA ligase

Gene

mll9625

Organism
Rhizobium loti (strain MAFF303099) (Mesorhizobium loti)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciMLOT266835:GJ9L-7225-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:mll9625Imported
Encoded oniPlasmid pMLbImported
OrganismiRhizobium loti (strain MAFF303099) (Mesorhizobium loti)Imported
Taxonomic identifieri266835 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesPhyllobacteriaceaeMesorhizobium
ProteomesiUP000000552 Componenti: Plasmid pMLb

Interactioni

Protein-protein interaction databases

STRINGi266835.mll9625.

Structurei

3D structure databases

ProteinModelPortaliQ98P39.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000222509.
KOiK01971.
OMAiLELHPWN.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q98P39-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MASDKLTTYK AKRDFKKTQE PSGQGSVKPS NRRRFVIQKH DATRLHYDLR
60 70 80 90 100
LELGGVFKSW AVTRGPSLDP HDKRLAVEVE DHPLDYGDFE GTIPKGQYGG
110 120 130 140 150
GTVMLWDRGY WEPEGKNSPE QALAKGDFKF TLEGERLHGS FVLVRMANDR
160 170 180 190 200
ERGKRTNWLL IKHRDEYAVE TNGAAILDKN DTSVASGRKM EAIAAGKGRS
210 220 230 240 250
PKPFMLQGGK AEADAVWDSR TGLAAQERKT NIRAKRKKHG TVTAADLPDF
260 270 280 290 300
IAPQLCQTLA RPPSESGWLH EIKFDGYRIQ MRVLGGEAIL QTRKGLDWTA
310 320 330 340 350
RYRAIARAAG NLPDAIIDGE ICALDENGAP DFAALQAALA EGKTDALVYF
360 370 380 390 400
AFDLLFEGAE DLRVLPLSKR KARLRQFLTD TGEDDRIRFV EHFETGGEAV
410 420 430 440 450
LRSACRLSLE GIVSKRADAP YVSGRTETWA KSKCRAGHEV VIGAYATTNG
460 470 480 490 500
KFRSLLVGVY RGDHFVYVGR VGTGYGAAKV RDLLPKLKAA ATRKSPFTGI
510 520 530 540 550
GAPKNEPGVV WLKPELVAEI EFAGWTSDGL VRQAAFKGLR EDKPAEEVEA
560 570 580 590 600
DKPASPEKTK VPQPREPTAA AKPSRSRGKV DVMGVLISNP DKPLWPDAND
610 620 630 640 650
GIPVTKEDLA RYYEAVGPWL IEHIRGRPCS IIRAPDGFGG EQFFQRHAMP
660 670 680 690 700
GTSNLLELVE VFGDKKPYLQ IDRVEGLAAV AQIGALELHP WNCEPQQPEV
710 720 730 740 750
PGRLVFDLDP GPDVPFKTVV EAAKEMRARL DDLGLVSFCK TTGGKGLHVV
760 770 780 790 800
TPLAVTKRSK LTWPEAKGFA HDVCLQMARD NPALYLTKMA KNQRIGRIFL
810 820 830 840 850
DYLRNDRMAT AVAPLSPRAR PGATVSMPLT WAQVKTDLDP KRFTLRTVPG
860 870 880
LLAKSTAWKD YGDGHRLLEA SIKRLARSMR RAA
Length:883
Mass (Da):97,530
Last modified:October 1, 2001 - v1
Checksum:iEB0DB180BF8A9CDC
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP003017 Genomic DNA. Translation: BAB54816.1.
RefSeqiNP_109477.1. NC_002682.1.
WP_010916160.1. NC_002682.1.

Genome annotation databases

EnsemblBacteriaiBAB54816; BAB54816; BAB54816.
GeneIDi1224449.
KEGGimlo:mll9625.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP003017 Genomic DNA. Translation: BAB54816.1.
RefSeqiNP_109477.1. NC_002682.1.
WP_010916160.1. NC_002682.1.

3D structure databases

ProteinModelPortaliQ98P39.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi266835.mll9625.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAB54816; BAB54816; BAB54816.
GeneIDi1224449.
KEGGimlo:mll9625.

Phylogenomic databases

HOGENOMiHOG000222509.
KOiK01971.
OMAiLELHPWN.
OrthoDBiEOG661H49.

Enzyme and pathway databases

BioCyciMLOT266835:GJ9L-7225-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Entry informationi

Entry nameiQ98P39_RHILO
AccessioniPrimary (citable) accession number: Q98P39
Entry historyi
Integrated into UniProtKB/TrEMBL: October 1, 2001
Last sequence update: October 1, 2001
Last modified: March 4, 2015
This is version 76 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, PlasmidImported, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.