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Q98JD8 (Q98JD8_RHILO) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 82. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:mll1989 EMBL BAB49228.1
OrganismRhizobium loti (strain MAFF303099) (Mesorhizobium loti) [Complete proteome] [HAMAP] EMBL BAB49228.1
Taxonomic identifier266835 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesPhyllobacteriaceaeMesorhizobium

Protein attributes

Sequence length525 AA.
Sequence statusComplete.
Protein existencePredicted

General annotation (Comments)

Sequence similarities

Contains 1 HTH luxR-type DNA-binding domain. RuleBase RU000707

Sequences

Sequence LengthMass (Da)Tools
Q98JD8 [UniParc].

Last modified October 1, 2001. Version 1.
Checksum: 3E2A08A968ED948C

FASTA52556,340
        10         20         30         40         50         60 
MTDVSIRRAD FMMVLAYASD LATGHSRDFA LKSCVLAMRI AELAGVSDEV RRNAYHQSML 

        70         80         90        100        110        120 
RYVGCNADTD LLSATFGDEI ALRQDLVGLD MGNRAELGRV FVQAFKRFYY DLEPDAQARA 

       130        140        150        160        170        180 
IEAAMSQALA VARPVLTAHC EVAQRIGARL GLSDEIRRNL GQIYERWDGK GLPRGLSGED 

       190        200        210        220        230        240 
VLPAVRLITL AQDAIALSDA VGIDGMAETV ASRGDGPYEA GLARLVSANA AALMEGIGAT 

       250        260        270        280        290        300 
VDRDTILALE PDPPATLDEG ACDEAFLAIA DMIDMRMPFT QGHSRMVSEL AAGAGKRIGL 

       310        320        330        340        350        360 
PEPDVRALRW SGCIHDIGEL VVPVATWMRN GPLSVRERDA AQLHAYYGER ALASFGREGE 

       370        380        390        400        410        420 
AMAALVLRHH ERLDGSGYHR KVGGSDLSPA ARILAAAEAF QTSREERPHR KALSSEAAAT 

       430        440        450        460        470        480 
QLRAAVRDGC ICPDAAEAVL SFAGQPSRRA GPQALAGMTP REIEVLRLIA TGLTAKEVAR 

       490        500        510        520 
KLDISPKTAD HHIESVYSKI GVTTRAAAAL YAVEHGLVRP GETRA 

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References

[1]"Complete genome structure of the nitrogen-fixing symbiotic bacterium Mesorhizobium loti."
Kaneko T., Nakamura Y., Sato S., Asamizu E., Kato T., Sasamoto S., Watanabe A., Idesawa K., Ishikawa A., Kawashima K., Kimura T., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A., Mochizuki Y., Nakayama S. expand/collapse author list , Nakazaki N., Shimpo S., Sugimoto M., Takeuchi C., Yamada M., Tabata S.
DNA Res. 7:331-338(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: MAFF303099 EMBL BAB49228.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
BA000012 Genomic DNA. Translation: BAB49228.1.
RefSeqNP_103442.1. NC_002678.2.

3D structure databases

ProteinModelPortalQ98JD8.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING266835.mll1989.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaBAB49228; BAB49228; BAB49228.
GeneID1226103.
KEGGmlo:mll1989.
PATRIC22477381. VBIMesLot2464_1599.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000268981.
OMATRCQRGA.
OrthoDBEOG6G4VQG.

Enzyme and pathway databases

BioCycMLOT266835:GJ9L-1565-MONOMER.

Family and domain databases

Gene3D1.10.10.10. 1 hit.
1.10.3210.10. 1 hit.
InterProIPR003607. HD/PDEase_dom.
IPR006674. HD_domain.
IPR016032. Sig_transdc_resp-reg_C-effctor.
IPR000792. Tscrpt_reg_LuxR_C.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamPF00196. GerE. 1 hit.
PF01966. HD. 1 hit.
[Graphical view]
PRINTSPR00038. HTHLUXR.
SMARTSM00471. HDc. 1 hit.
SM00421. HTH_LUXR. 1 hit.
[Graphical view]
SUPFAMSSF46894. SSF46894. 1 hit.
PROSITEPS50043. HTH_LUXR_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ98JD8_RHILO
AccessionPrimary (citable) accession number: Q98JD8
Entry history
Integrated into UniProtKB/TrEMBL: October 1, 2001
Last sequence update: October 1, 2001
Last modified: May 14, 2014
This is version 82 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)