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Protein
Submitted name:

ATP-dependent DNA ligase

Gene

mll4606

Organism
Rhizobium loti (strain MAFF303099) (Mesorhizobium loti)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro
  3. DNA primase activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciMLOT266835:GJ9L-3581-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:mll4606Imported
OrganismiRhizobium loti (strain MAFF303099) (Mesorhizobium loti)Imported
Taxonomic identifieri266835 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesPhyllobacteriaceaeMesorhizobium
ProteomesiUP000000552: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi266835.mll4606.

Structurei

3D structure databases

ProteinModelPortaliQ98DP8.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000222509.
KOiK01971.
OMAiHPLDYAD.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q98DP8-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MAGLEQYHTK RDFKKTSEPA GKVARTGKNE AGGIFVIHKH AATRLHYDLR
60 70 80 90 100
LEHDGVLWSW AVTRGPSLDP HEKRLAVHVE DHPIDYAPFE GTIPKGEYGG
110 120 130 140 150
GSVIVWDEGT WMPETDPAKA MKKGHISFEL NGHKLHGLWH LVRLKPRAGE
160 170 180 190 200
KRDNWLLIKS DDAAARPGED ILKERPESVK SGLTIEEVGE GKAAKGRKPE
210 220 230 240 250
VWHSNKPAAG KAKAAARKLD FIEPQLATLE RDAPPGKDWL HEVKFDGYRM
260 270 280 290 300
QAHIAGTDVR LLTRTGLDWT EKFGGEIIAE LAGLKCSDAI IDGEIVVLAD
310 320 330 340 350
SGVSSFALLQ QDLSAKRANR FLYYVFDLMR LDGKDLRAEP LVERKQALQE
360 370 380 390 400
LLGKQAENPA VRFSDHFFEP GKIMLEHACR MGLEGVVSKR ADAPYRSGRG
410 420 430 440 450
PTWVKSKCTA RQEFVIGGYL PSDKTGRGLR SLLVGYYEGG KLQYAGRVGT
460 470 480 490 500
GFSVKGATEL KTRLDALQAK ASPFDKAVPK GKGLVWVKPE LVGEVEFRSW
510 520 530 540 550
TSDRIVRHAS FQGLREDKPA EDVVQEKPKA ATGKAKPASS GAGTMTTSVK
560 570 580 590 600
LSHPDKLLWP DEKISKQGLL DHYAEVWPRM EQFVVNRPLS LVRAPDGIGG
610 620 630 640 650
PRFFQKHASA GMSDRIARMK DPTDGEEILF VRDFDGVAAL VQYGVVEIHI
660 670 680 690 700
WGCTIDKLEQ PDQIIFDLDP DEGVDVKAVR EAALDIRGKL DELSLPNFVK
710 720 730 740 750
TSGGKGYHVL VPLKPSADWE AVKTFAHDFA KALEQGAPDR YTATLSKKAR
760 770 780 790 800
TGKIFVDYLR NGRGSTTVAP YSSRAKKGAT VSMPVTWAEI EAGLAPNAFP
810 820
IGDKTTLAKL AEADPWMDFF KQGKVLKRG
Length:829
Mass (Da):91,470
Last modified:October 1, 2001 - v1
Checksum:i292904DE63BFA102
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000012 Genomic DNA. Translation: BAB51222.1.
RefSeqiNP_105436.1. NC_002678.2.
WP_010912564.1. NC_002678.2.

Genome annotation databases

EnsemblBacteriaiBAB51222; BAB51222; BAB51222.
GeneIDi1228097.
KEGGimlo:mll4606.
PATRICi22481505. VBIMesLot2464_3638.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000012 Genomic DNA. Translation: BAB51222.1.
RefSeqiNP_105436.1. NC_002678.2.
WP_010912564.1. NC_002678.2.

3D structure databases

ProteinModelPortaliQ98DP8.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi266835.mll4606.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAB51222; BAB51222; BAB51222.
GeneIDi1228097.
KEGGimlo:mll4606.
PATRICi22481505. VBIMesLot2464_3638.

Phylogenomic databases

HOGENOMiHOG000222509.
KOiK01971.
OMAiHPLDYAD.
OrthoDBiEOG661H49.

Enzyme and pathway databases

BioCyciMLOT266835:GJ9L-3581-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: MAFF303099Imported.

Entry informationi

Entry nameiQ98DP8_RHILO
AccessioniPrimary (citable) accession number: Q98DP8
Entry historyi
Integrated into UniProtKB/TrEMBL: October 1, 2001
Last sequence update: October 1, 2001
Last modified: February 4, 2015
This is version 79 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.