Q98DP8 (Q98DP8_RHILO) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
ATP-dependent DNA ligase EMBL BAB51222.1

Gene names

Ordered Locus Names:

mll4606 EMBL BAB51222.1

Organism

Rhizobium loti (strain MAFF303099) (Mesorhizobium loti) [Complete proteome] [HAMAP] EMBL BAB51222.1

Taxonomic identifier

266835 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Phyllobacteriaceae › Mesorhizobium › Rhizobium loti

Protein attributes

Sequence length	829 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL BAB51222.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA recombination Inferred from electronic annotation. Source: InterPro DNA repair Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro DNA primase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q98DP8 [UniParc]. Last modified October 1, 2001. Version 1. Checksum: 292904DE63BFA102	FASTA	829	91,470
	10 20 30 40 50 60 MAGLEQYHTK RDFKKTSEPA GKVARTGKNE AGGIFVIHKH AATRLHYDLR LEHDGVLWSW 70 80 90 100 110 120 AVTRGPSLDP HEKRLAVHVE DHPIDYAPFE GTIPKGEYGG GSVIVWDEGT WMPETDPAKA 130 140 150 160 170 180 MKKGHISFEL NGHKLHGLWH LVRLKPRAGE KRDNWLLIKS DDAAARPGED ILKERPESVK 190 200 210 220 230 240 SGLTIEEVGE GKAAKGRKPE VWHSNKPAAG KAKAAARKLD FIEPQLATLE RDAPPGKDWL 250 260 270 280 290 300 HEVKFDGYRM QAHIAGTDVR LLTRTGLDWT EKFGGEIIAE LAGLKCSDAI IDGEIVVLAD 310 320 330 340 350 360 SGVSSFALLQ QDLSAKRANR FLYYVFDLMR LDGKDLRAEP LVERKQALQE LLGKQAENPA 370 380 390 400 410 420 VRFSDHFFEP GKIMLEHACR MGLEGVVSKR ADAPYRSGRG PTWVKSKCTA RQEFVIGGYL 430 440 450 460 470 480 PSDKTGRGLR SLLVGYYEGG KLQYAGRVGT GFSVKGATEL KTRLDALQAK ASPFDKAVPK 490 500 510 520 530 540 GKGLVWVKPE LVGEVEFRSW TSDRIVRHAS FQGLREDKPA EDVVQEKPKA ATGKAKPASS 550 560 570 580 590 600 GAGTMTTSVK LSHPDKLLWP DEKISKQGLL DHYAEVWPRM EQFVVNRPLS LVRAPDGIGG 610 620 630 640 650 660 PRFFQKHASA GMSDRIARMK DPTDGEEILF VRDFDGVAAL VQYGVVEIHI WGCTIDKLEQ 670 680 690 700 710 720 PDQIIFDLDP DEGVDVKAVR EAALDIRGKL DELSLPNFVK TSGGKGYHVL VPLKPSADWE 730 740 750 760 770 780 AVKTFAHDFA KALEQGAPDR YTATLSKKAR TGKIFVDYLR NGRGSTTVAP YSSRAKKGAT 790 800 810 820 VSMPVTWAEI EAGLAPNAFP IGDKTTLAKL AEADPWMDFF KQGKVLKRG

References

[1]

"Complete genome structure of the nitrogen-fixing symbiotic bacterium Mesorhizobium loti." Kaneko T., Nakamura Y., Sato S., Asamizu E., Kato T., Sasamoto S., Watanabe A., Idesawa K., Ishikawa A., Kawashima K., Kimura T., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A., Mochizuki Y., Nakayama S. , Nakazaki N., Shimpo S., Sugimoto M., Takeuchi C., Yamada M., Tabata S. DNA Res. 7:331-338(2000) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: MAFF303099 EMBL BAB51222.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	BA000012 Genomic DNA. Translation: BAB51222.1.
RefSeq	NP_105436.1. NC_002678.2.
3D structure databases
ProteinModelPortal	Q98DP8.
ModBase	Search...
Protein-protein interaction databases
STRING	266835.mll4606.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	BAB51222; BAB51222; BAB51222.
GeneID	1228097.
KEGG	mlo:mll4606.
PATRIC	22481505. VBIMesLot2464_3638.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000222509.
KO	K01971.
OMA	WHLVRSG.
Enzyme and pathway databases
BioCyc	MLOT266835:GJ9L-3581-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR014146. DNA_pol_LigD_ligase_dom. IPR002755. DNA_primase_S. IPR014144. LigD_PE_domain. IPR014145. LigD_pol. IPR012340. NA-bd_OB-fold. IPR014143. NHEJ_ligase_prk. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF01896. DNA_primase_S. 1 hit. PF13298. LigD_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR02777. LigD_PE_dom. 1 hit. TIGR02778. ligD_pol. 1 hit. TIGR02779. NHEJ_ligase_lig. 1 hit. TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITE	PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q98DP8_RHILO

Accession

Primary (citable) accession number: Q98DP8

Entry history

Integrated into UniProtKB/TrEMBL:	October 1, 2001
Last sequence update:	October 1, 2001
Last modified:	May 1, 2013
This is version 71 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)