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Protein

Polyribonucleotide nucleotidyltransferase

Gene

pnp

Organism
Mesorhizobium japonicum (strain LMG 29417 / CECT 9101 / MAFF 303099) (Mesorhizobium loti (strain MAFF 303099))
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction.UniRule annotation

Catalytic activityi

RNA(n+1) + phosphate = RNA(n) + a nucleoside diphosphate.UniRule annotation

Cofactori

Mg2+UniRule annotation

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi488MagnesiumUniRule annotation1
Metal bindingi494MagnesiumUniRule annotation1

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionNucleotidyltransferase, RNA-binding, Transferase
LigandMagnesium, Metal-binding

Enzyme and pathway databases

BioCyciMLOT266835:G1G20-4419-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Polyribonucleotide nucleotidyltransferaseUniRule annotation (EC:2.7.7.8UniRule annotation)
Alternative name(s):
Polynucleotide phosphorylaseUniRule annotation
Short name:
PNPaseUniRule annotation
Gene namesi
Name:pnpUniRule annotation
Ordered Locus Names:mlr5562
OrganismiMesorhizobium japonicum (strain LMG 29417 / CECT 9101 / MAFF 303099) (Mesorhizobium loti (strain MAFF 303099))
Taxonomic identifieri266835 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesPhyllobacteriaceaeMesorhizobium
Proteomesi
  • UP000000552 Componenti: Chromosome

Subcellular locationi

  • Cytoplasm UniRule annotation

GO - Cellular componenti

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003298011 – 715Polyribonucleotide nucleotidyltransferaseAdd BLAST715

Interactioni

Protein-protein interaction databases

STRINGi266835.mlr5562

Structurei

3D structure databases

ProteinModelPortaliQ98BI3
SMRiQ98BI3
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini555 – 614KHUniRule annotationAdd BLAST60
Domaini624 – 692S1 motifUniRule annotationAdd BLAST69

Sequence similaritiesi

Belongs to the polyribonucleotide nucleotidyltransferase family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105C62 Bacteria
COG1185 LUCA
HOGENOMiHOG000218327
KOiK00962
OMAiRYMHNYN
OrthoDBiPOG091H00M0

Family and domain databases

Gene3Di3.30.1370.10, 1 hit
3.30.230.70, 2 hits
HAMAPiMF_01595 PNPase, 1 hit
InterProiView protein in InterPro
IPR001247 ExoRNase_PH_dom1
IPR015847 ExoRNase_PH_dom2
IPR036345 ExoRNase_PH_dom2_sf
IPR004087 KH_dom
IPR004088 KH_dom_type_1
IPR036612 KH_dom_type_1_sf
IPR012340 NA-bd_OB-fold
IPR012162 PNPase
IPR027408 PNPase/RNase_PH_dom_sf
IPR015848 PNPase_PH_RNA-bd_bac/org-type
IPR020568 Ribosomal_S5_D2-typ_fold
IPR022967 S1_dom
IPR003029 S1_domain
PANTHERiPTHR11252 PTHR11252, 1 hit
PfamiView protein in Pfam
PF00013 KH_1, 1 hit
PF03726 PNPase, 1 hit
PF01138 RNase_PH, 2 hits
PF03725 RNase_PH_C, 2 hits
PF00575 S1, 1 hit
PIRSFiPIRSF005499 PNPase, 1 hit
SMARTiView protein in SMART
SM00322 KH, 1 hit
SM00316 S1, 1 hit
SUPFAMiSSF50249 SSF50249, 1 hit
SSF54211 SSF54211, 2 hits
SSF54791 SSF54791, 1 hit
SSF55666 SSF55666, 2 hits
TIGRFAMsiTIGR03591 polynuc_phos, 1 hit
PROSITEiView protein in PROSITE
PS50084 KH_TYPE_1, 1 hit
PS50126 S1, 1 hit

Sequencei

Sequence statusi: Complete.

Q98BI3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MFNQHKVEIE WGGRPLILET GKIARQADGA VLATYGETKV LATVVSMKEP
60 70 80 90 100
KPGLDFFPLT VNYQEKTYAA GKIPGGYFKR EGRPSEKETL VSRLIDRPIR
110 120 130 140 150
PLFADGYKND TQIVVTVVQH DLENDPDILS IVATSAALTL SGVPFMGPVG
160 170 180 190 200
GARVGYINGE YVLNPHIDEM QESKLDLVVA GTADAVLMVE SEAKELGEEL
210 220 230 240 250
MLGAVMFGHK GFQPVIDAII KLAEVAAKEP RDFTAPDYSA LEGEMLKIVG
260 270 280 290 300
DELSNAYKIT DKQQRYAAVD AVKAKVKAAF APAEGEEPKY TSEQIGSVFK
310 320 330 340 350
ELQAKVVRWN ILDTGSRIDG RDLKTVRKIV SEVGVLPRTH GSALFTRGET
360 370 380 390 400
QALVVATLGT GEDEQYVDSL TGMYKEKFLL HYNFPPYSVG ETGRMGSPGR
410 420 430 440 450
REIGHGKLAW RAIRPMLPSA DQFPYTLRVV SEITESNGSS SMATVCGTSL
460 470 480 490 500
ALMDAGVPLA KPVAGIAMGL IKEGERFAVL SDILGDEDHL GDMDFKVAGT
510 520 530 540 550
ANGITSLQMD IKIEGITEEI MKIALDQAKD GRQHILGEMA HALTGARPEL
560 570 580 590 600
GEFAPRIEVM HIPTDKIRDV IGSGGKVIRE IVEKTGAKIN IEDDGTVKIA
610 620 630 640 650
SSNAKEIEAA KKWIHTIVAE PEVGEIYEGT VVKTADFGAF VNFFGPRDGL
660 670 680 690 700
VHISQLANER VAKTSDVVKE GDKVWVKLMG FDERGKVRLS MKVVDQATGK
710
EIVRDKRAEG EEDAA
Length:715
Mass (Da):77,697
Last modified:October 1, 2001 - v1
Checksum:iF5553F5251DD4CB8
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000012 Genomic DNA Translation: BAB51989.1
RefSeqiWP_010913327.1, NC_002678.2

Genome annotation databases

EnsemblBacteriaiBAB51989; BAB51989; BAB51989
KEGGimlo:mlr5562
PATRICifig|266835.9.peg.4421

Similar proteinsi

Entry informationi

Entry nameiPNP_RHILO
AccessioniPrimary (citable) accession number: Q98BI3
Entry historyiIntegrated into UniProtKB/Swiss-Prot: April 29, 2008
Last sequence update: October 1, 2001
Last modified: May 23, 2018
This is version 92 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

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