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Q988D3 (Q988D3_RHILO) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 69. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:mlr6788 EMBL BAB53017.1
OrganismRhizobium loti (strain MAFF303099) (Mesorhizobium loti) [Complete proteome] [HAMAP] EMBL BAB53017.1
Taxonomic identifier266835 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesPhyllobacteriaceaeMesorhizobium

Protein attributes

Sequence length379 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Nucleotide binding21 – 222FAD PDB 3ALH PDB 3ALJ PDB 3ALK PDB 3ALL PDB 3ALM PDB 4GF7 PDB 4H28 PDB 4H2N PDB 4H2P PDB 4H2Q PDB 4H2R
Nucleotide binding41 – 422FAD PDB 3ALH PDB 3ALJ PDB 3ALK PDB 3ALL PDB 3ALM PDB 4GF7 PDB 4H28 PDB 4H2N PDB 4H2P PDB 4H2Q PDB 4H2R
Nucleotide binding295 – 3028FAD PDB 3ALH PDB 3ALJ PDB 3ALK PDB 3ALL PDB 3ALM PDB 4GF7 PDB 4H28 PDB 4H2N PDB 4H2P PDB 4H2Q PDB 4H2R
Region50 – 512Sulfate 2 binding PDB 4H2P
Region176 – 1772Sulfate 5 binding PDB 4H2P

Sites

Binding site441Sulfate 1 PDB 4H2P
Binding site541FAD; via amide nitrogen and carbonyl oxygen PDB 3ALH PDB 3ALJ PDB 3ALK PDB 3ALL PDB 3ALM PDB 4GF7 PDB 4H28 PDB 4H2N PDB 4H2P PDB 4H2Q PDB 4H2R
Binding site1061FAD PDB 3ALH PDB 3ALJ PDB 3ALK PDB 3ALL PDB 3ALM PDB 4GF7 PDB 4H28 PDB 4H2N PDB 4H2P PDB 4H2Q PDB 4H2R
Binding site1301FAD; via amide nitrogen and carbonyl oxygen PDB 3ALH PDB 3ALJ PDB 3ALK PDB 3ALL PDB 3ALM PDB 4GF7 PDB 4H28 PDB 4H2N PDB 4H2P PDB 4H2Q PDB 4H2R
Binding site1561FAD; via carbonyl oxygen PDB 3ALJ PDB 3ALK PDB 4H2Q PDB 4H2R
Binding site1691Sulfate 3; via amide nitrogen PDB 4H2P
Binding site1771Sulfate 4; via amide nitrogen PDB 4H2P
Binding site1811FAD PDB 3ALJ PDB 3ALL PDB 4H2P PDB 4H2R
Binding site2661Sulfate 2 PDB 4H2P
Binding site2801Sulfate 3 PDB 4H2P
Binding site2811Sulfate 6; via amide nitrogen PDB 4H2P
Binding site2881FAD PDB 3ALH PDB 3ALJ PDB 3ALK PDB 3ALL PDB 3ALM PDB 4GF7 PDB 4H28 PDB 4H2N PDB 4H2P PDB 4H2Q PDB 4H2R

Sequences

Sequence LengthMass (Da)Tools
Q988D3 [UniParc].

Last modified October 1, 2001. Version 1.
Checksum: 297E85523850E499

FASTA37941,748
        10         20         30         40         50         60 
MANVNKTPGK TRRAEVAGGG FAGLTAAIAL KQNGWDVRLH EKSSELRAFG AGIYLWHNGL 

        70         80         90        100        110        120 
RVLEGLGALD DVLQGSHTPP TYETWMHNKS VSKETFNGLP WRIMTRSHLH DALVNRARAL 

       130        140        150        160        170        180 
GVDISVNSEA VAADPVGRLT LQTGEVLEAD LIVGADGVGS KVRDSIGFKQ DRWVSKDGLI 

       190        200        210        220        230        240 
RLIVPRMKKE LGHGEWDNTI DMWNFWPRVQ RILYSPCNEN ELYLGLMAPA ADPRGSSVPI 

       250        260        270        280        290        300 
DLEVWVEMFP FLEPCLIEAA KLKTARYDKY ETTKLDSWTR GKVALVGDAA HAMCPALAQG 

       310        320        330        340        350        360 
AGCAMVNAFS LSQDLEEGSS VEDALVAWET RIRPITDRCQ ALSGDYAANR SLSKGNMFTP 

       370 
AALEAARYDP LRRVYSWPQ 

« Hide

References

« Hide 'large scale' references
[1]"Complete genome structure of the nitrogen-fixing symbiotic bacterium Mesorhizobium loti."
Kaneko T., Nakamura Y., Sato S., Asamizu E., Kato T., Sasamoto S., Watanabe A., Idesawa K., Ishikawa A., Kawashima K., Kimura T., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A., Mochizuki Y., Nakayama S. expand/collapse author list , Nakazaki N., Shimpo S., Sugimoto M., Takeuchi C., Yamada M., Tabata S.
DNA Res. 7:331-338(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: MAFF303099 EMBL BAB53017.1.
[2]"Structure of the PLP degradative enzyme 2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase from Mesorhizobium loti MAFF303099 and its mechanistic implications."
McCulloch K.M., Mukherjee T., Begley T.P., Ealick S.E.
Biochemistry 48:4139-4149(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (2.10 ANGSTROMS).
[3]"Crystal structure of 2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase."
Kobayashi J., Yoshida H., Yoshikane Y., Kamitori S., Yagi T.
Submitted (AUG-2010) to the PDB data bank
Cited for: X-RAY CRYSTALLOGRAPHY (1.78 ANGSTROMS) IN COMPLEX WITH FAD.
[4]"Crystal structure of 2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase."
Kobayashi J., Yoshida H., Mikami B., Hayashi H., Kamitori S., Sawa Y., Yagi T.
Submitted (AUG-2012) to the PDB data bank
Cited for: X-RAY CRYSTALLOGRAPHY (1.58 ANGSTROMS) IN COMPLEX WITH FAD.
[5]"Crystal structure of 2-Methyl-3-hydroxypyridiine-5-carboxylic acid oxygenase."
Kobayashi J., Yoshida H., Mikami B., Hayashi H., Kamitori S., Yagi T.
Submitted (SEP-2012) to the PDB data bank
Cited for: X-RAY CRYSTALLOGRAPHY (1.50 ANGSTROMS) IN COMPLEX WITH FAD.
[6]"Crystal structure of 2-Methyl-3-hydroxypyridine-5-carboxylic acid oxygenase."
Kobayashi J., Yoshida H., Mikami B., Hayashi H., Kamitori S., Yagi T.
Submitted (SEP-2012) to the PDB data bank
Cited for: X-RAY CRYSTALLOGRAPHY (2.47 ANGSTROMS) IN COMPLEX WITH FAD.
[7]"Crystal structure of 2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase."
Kobayashi J., Yoshida H., Mikami B., Hayashi H., Kamitori S., Yagi T.
Submitted (SEP-2012) to the PDB data bank
Cited for: X-RAY CRYSTALLOGRAPHY (2.30 ANGSTROMS) IN COMPLEX WITH FAD.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
BA000012 Genomic DNA. Translation: BAB53017.1.
RefSeqNP_107231.1. NC_002678.2.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
3ALHX-ray1.94A/B1-379[»]
3ALIX-ray1.77A/B1-379[»]
3ALJX-ray1.48A1-379[»]
3ALKX-ray2.30A1-379[»]
3ALLX-ray1.78A/B1-379[»]
3ALMX-ray1.77A/B1-379[»]
3GMBX-ray2.10A/B1-379[»]
3GMCX-ray2.10A/B1-379[»]
4GF7X-ray1.58A1-379[»]
4H28X-ray1.77A/B1-379[»]
4H2NX-ray2.30A1-379[»]
4H2PX-ray1.98A/B/C/D1-379[»]
4H2QX-ray1.50A1-379[»]
4H2RX-ray2.47A/B1-379[»]
ProteinModelPortalQ988D3.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING266835.mlr6788.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaBAB53017; BAB53017; BAB53017.
GeneID1229886.
KEGGmlo:mlr6788.
PATRIC22485043. VBIMesLot2464_5401.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000000640.
OMALLYTPCT.
OrthoDBEOG6J48MG.
ProtClustDBCLSK864556.

Enzyme and pathway databases

BioCycMLOT266835:GJ9L-5382-MONOMER.

Family and domain databases

InterProIPR002938. mOase_FAD-bd.
IPR003042. Rng_hydrolase-like.
[Graphical view]
PfamPF01494. FAD_binding_3. 1 hit.
[Graphical view]
PRINTSPR00420. RNGMNOXGNASE.
ProtoNetSearch...

Other

EvolutionaryTraceQ988D3.

Entry information

Entry nameQ988D3_RHILO
AccessionPrimary (citable) accession number: Q988D3
Entry history
Integrated into UniProtKB/TrEMBL: October 1, 2001
Last sequence update: October 1, 2001
Last modified: April 16, 2014
This is version 69 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)