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Protein
Submitted name:

Nar protein

Gene

cpsf4

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Unreviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri35 – 59C3H1-typePROSITE-ProRule annotationAdd BLAST25
Zinc fingeri62 – 89C3H1-typePROSITE-ProRule annotationAdd BLAST28
Zinc fingeri90 – 117C3H1-typePROSITE-ProRule annotationAdd BLAST28
Zinc fingeri118 – 145C3H1-typePROSITE-ProRule annotationAdd BLAST28
Zinc fingeri147 – 169C3H1-typePROSITE-ProRule annotationAdd BLAST23

GO - Molecular functioni

GO - Biological processi

  • eye photoreceptor cell development Source: ZFIN

Keywordsi

LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Submitted name:
Nar proteinImported
Submitted name:
No archesImported
Gene namesi
Name:cpsf4Imported
Synonyms:narImported
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)Imported
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio

Organism-specific databases

ZFINiZDB-GENE-990415-180 cpsf4

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini35 – 59C3H1-typeInterPro annotationAdd BLAST25
Domaini62 – 89C3H1-typeInterPro annotationAdd BLAST28
Domaini90 – 117C3H1-typeInterPro annotationAdd BLAST28
Domaini118 – 145C3H1-typeInterPro annotationAdd BLAST28
Domaini147 – 169C3H1-typeInterPro annotationAdd BLAST23
Domaini247 – 262CCHC-typeInterPro annotationAdd BLAST16

Zinc finger

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri35 – 59C3H1-typePROSITE-ProRule annotationAdd BLAST25
Zinc fingeri62 – 89C3H1-typePROSITE-ProRule annotationAdd BLAST28
Zinc fingeri90 – 117C3H1-typePROSITE-ProRule annotationAdd BLAST28
Zinc fingeri118 – 145C3H1-typePROSITE-ProRule annotationAdd BLAST28
Zinc fingeri147 – 169C3H1-typePROSITE-ProRule annotationAdd BLAST23

Keywords - Domaini

Zinc-fingerPROSITE-ProRule annotationSAAS annotation

Phylogenomic databases

eggNOGiKOG1040 Eukaryota
COG5084 LUCA
HOGENOMiHOG000212457
HOVERGENiHBG051108
KOiK14404

Family and domain databases

InterProiView protein in InterPro
IPR000571 Znf_CCCH
IPR036855 Znf_CCCH_sf
IPR001878 Znf_CCHC
IPR036875 Znf_CCHC_sf
PfamiView protein in Pfam
PF00642 zf-CCCH, 1 hit
PF00098 zf-CCHC, 1 hit
SMARTiView protein in SMART
SM00343 ZnF_C2HC, 1 hit
SM00356 ZnF_C3H1, 5 hits
SUPFAMiSSF57756 SSF57756, 1 hit
SSF90229 SSF90229, 2 hits
PROSITEiView protein in PROSITE
PS50103 ZF_C3H1, 5 hits
PS50158 ZF_CCHC, 1 hit

Sequencei

Sequence statusi: Complete.

Q98881-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MQELIATVDH IKFDLEIAVE QQLGAQPLPF PGMDKSGAAV CEYFMRAACM
60 70 80 90 100
KGGMCPFRHI SGEKTVVCKH WLRGLCKKGD QCEFLHEYDM TKMPECYFYS
110 120 130 140 150
KFGECSNKEC PFLHIDPESK IKDCPWYDRG FCKHGPDCRH RHTRRVICVN
160 170 180 190 200
YLVGFCPEGK SCKFMHPRFE LPMGATEQPP LPQQVQTQQK QQNMQPINRS
210 220 230 240 250
SQSLIQLTNP NISNNNHQRI PNAVGIVHSN SHMGGARGPR PLDQVTCYKC
260 270
GEKGHYANKC TKGHLAFLSG Q
Length:271
Mass (Da):30,764
Last modified:February 1, 1997 - v1
Checksum:iE3EF3DD18CBE5B3B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U70479 mRNA Translation: AAC60040.1
BC045289 mRNA Translation: AAH45289.1
BC164456 mRNA Translation: AAI64456.1
RefSeqiNP_571084.1, NM_131009.1
UniGeneiDr.75095

Genome annotation databases

GeneIDi30203
KEGGidre:30203

Similar proteinsi

Entry informationi

Entry nameiQ98881_DANRE
AccessioniPrimary (citable) accession number: Q98881
Entry historyiIntegrated into UniProtKB/TrEMBL: February 1, 1997
Last sequence update: February 1, 1997
Last modified: May 23, 2018
This is version 128 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

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