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Protein
Submitted name:

Nar protein

Gene

cpsf4

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

  • eye photoreceptor cell development Source: ZFIN
Complete GO annotation...

Keywords - Ligandi

Metal-binding, Zinc

Names & Taxonomyi

Protein namesi
Submitted name:
Nar proteinImported
Submitted name:
No archesImported
Gene namesi
Name:cpsf4Imported
Synonyms:narImported
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)Imported
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio

Organism-specific databases

ZFINiZDB-GENE-990415-180. cpsf4.

Interactioni

Protein-protein interaction databases

STRINGi7955.ENSDARP00000007713.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini35 – 5925C3H1-typeInterPro annotationAdd
BLAST
Domaini62 – 8928C3H1-typeInterPro annotationAdd
BLAST
Domaini90 – 11728C3H1-typeInterPro annotationAdd
BLAST
Domaini118 – 14528C3H1-typeInterPro annotationAdd
BLAST
Domaini147 – 16923C3H1-typeInterPro annotationAdd
BLAST
Domaini247 – 26216CCHC-typeInterPro annotationAdd
BLAST

Keywords - Domaini

Zinc-fingerUniRule annotation

Phylogenomic databases

eggNOGiKOG1040. Eukaryota.
COG5084. LUCA.
HOGENOMiHOG000212457.
HOVERGENiHBG051108.
KOiK14404.

Family and domain databases

Gene3Di4.10.1000.10. 2 hits.
4.10.60.10. 1 hit.
InterProiIPR000571. Znf_CCCH.
IPR001878. Znf_CCHC.
[Graphical view]
PfamiPF00642. zf-CCCH. 1 hit.
PF00098. zf-CCHC. 1 hit.
[Graphical view]
SMARTiSM00343. ZnF_C2HC. 1 hit.
SM00356. ZnF_C3H1. 5 hits.
[Graphical view]
SUPFAMiSSF57756. SSF57756. 1 hit.
SSF90229. SSF90229. 2 hits.
PROSITEiPS50103. ZF_C3H1. 5 hits.
PS50158. ZF_CCHC. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q98881-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MQELIATVDH IKFDLEIAVE QQLGAQPLPF PGMDKSGAAV CEYFMRAACM
60 70 80 90 100
KGGMCPFRHI SGEKTVVCKH WLRGLCKKGD QCEFLHEYDM TKMPECYFYS
110 120 130 140 150
KFGECSNKEC PFLHIDPESK IKDCPWYDRG FCKHGPDCRH RHTRRVICVN
160 170 180 190 200
YLVGFCPEGK SCKFMHPRFE LPMGATEQPP LPQQVQTQQK QQNMQPINRS
210 220 230 240 250
SQSLIQLTNP NISNNNHQRI PNAVGIVHSN SHMGGARGPR PLDQVTCYKC
260 270
GEKGHYANKC TKGHLAFLSG Q
Length:271
Mass (Da):30,764
Last modified:February 1, 1997 - v1
Checksum:iE3EF3DD18CBE5B3B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U70479 mRNA. Translation: AAC60040.1.
BC045289 mRNA. Translation: AAH45289.1.
BC164456 mRNA. Translation: AAI64456.1.
RefSeqiNP_571084.1. NM_131009.1.
UniGeneiDr.75095.

Genome annotation databases

GeneIDi30203.
KEGGidre:30203.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U70479 mRNA. Translation: AAC60040.1.
BC045289 mRNA. Translation: AAH45289.1.
BC164456 mRNA. Translation: AAI64456.1.
RefSeqiNP_571084.1. NM_131009.1.
UniGeneiDr.75095.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi7955.ENSDARP00000007713.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi30203.
KEGGidre:30203.

Organism-specific databases

CTDi10898.
ZFINiZDB-GENE-990415-180. cpsf4.

Phylogenomic databases

eggNOGiKOG1040. Eukaryota.
COG5084. LUCA.
HOGENOMiHOG000212457.
HOVERGENiHBG051108.
KOiK14404.

Family and domain databases

Gene3Di4.10.1000.10. 2 hits.
4.10.60.10. 1 hit.
InterProiIPR000571. Znf_CCCH.
IPR001878. Znf_CCHC.
[Graphical view]
PfamiPF00642. zf-CCCH. 1 hit.
PF00098. zf-CCHC. 1 hit.
[Graphical view]
SMARTiSM00343. ZnF_C2HC. 1 hit.
SM00356. ZnF_C3H1. 5 hits.
[Graphical view]
SUPFAMiSSF57756. SSF57756. 1 hit.
SSF90229. SSF90229. 2 hits.
PROSITEiPS50103. ZF_C3H1. 5 hits.
PS50158. ZF_CCHC. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Insertional mutagenesis and rapid cloning of essential genes in zebrafish."
    Gaiano N., Amsterdam A., Kawakami K., Allende M., Becker T., Hopkins N.
    Nature 383:829-832(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
  2. NIH - Zebrafish Gene Collection (ZGC) project
    Submitted (JAN-2003) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: ABImported.
    Tissue: Whole bodyImported.
  3. NIH - Zebrafish Gene Collection (ZGC) project
    Submitted (APR-2008) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: PCR rescueImported.

Entry informationi

Entry nameiQ98881_DANRE
AccessioniPrimary (citable) accession number: Q98881
Entry historyi
Integrated into UniProtKB/TrEMBL: February 1, 1997
Last sequence update: February 1, 1997
Last modified: July 6, 2016
This is version 112 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.