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Protein

Capsid protein

Gene

CP

Organism
Tobacco mosaic virus (strain Rakkyo) (TMV-R)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Capsid protein self-assembles to form rod-shaped virions about 18 nm in diameter with a central canal enclosing the viral genomic RNA.

GO - Molecular functioni

Names & Taxonomyi

Protein namesi
Recommended name:
Capsid protein
Alternative name(s):
Coat protein
Gene namesi
Name:CP
OrganismiTobacco mosaic virus (strain Rakkyo) (TMV-R)
Taxonomic identifieri138310 [NCBI]
Taxonomic lineageiVirusesssRNA virusesssRNA positive-strand viruses, no DNA stageVirgaviridaeTobamovirus
Virus hostiAllium chinense [TaxID: 130426]
Nicotiana tabacum (Common tobacco) [TaxID: 4097]
Proteomesi
  • UP000008251 Componenti: Genome

Subcellular locationi

GO - Cellular componenti

Keywords - Cellular componenti

Capsid protein, Helical capsid protein, Virion

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemoved; by hostBy similarity
ChainiPRO_00001449272 – 159Capsid proteinAdd BLAST158

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei2N-acetylserine; by hostBy similarity1

Keywords - PTMi

Acetylation

Structurei

3D structure databases

ProteinModelPortaliQ98747.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the virgaviridae capsid protein family.Curated

Phylogenomic databases

OrthoDBiVOG0900011A.

Family and domain databases

Gene3Di1.20.120.70. 1 hit.
InterProiView protein in InterPro
IPR001337. TMV-like_coat.
IPR036417. TMV-like_coat_sf.
PfamiView protein in Pfam
PF00721. TMV_coat. 1 hit.
SUPFAMiSSF47195. SSF47195. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q98747-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSYNINTPSQ FVFLSSAWAD PIELINLCTN ALGNQFQTQQ ARTVVQRQFS
60 70 80 90 100
EVWKPSPQVT VRFPDSDFKV YRFNAVLDPL VTALLGAFDT RNRIIEVENQ
110 120 130 140 150
ANPSTAETLD ATRRVDDATV AIRSAINNLI VELTRGTGSY NRSSFESSSG

LVWTSSPAT
Length:159
Mass (Da):17,652
Last modified:January 23, 2007 - v3
Checksum:i3A29C1662B26EC6D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D63809 Genomic RNA. Translation: BAA09879.1.

Similar proteinsi

Entry informationi

Entry nameiCAPSD_TMVRA
AccessioniPrimary (citable) accession number: Q98747
Entry historyiIntegrated into UniProtKB/Swiss-Prot: December 1, 2000
Last sequence update: January 23, 2007
Last modified: October 25, 2017
This is version 62 of the entry and version 3 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families