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Protein

Beta-(1-->2)glucan export ATP-binding/permease protein NdvA

Gene

ndvA

Organism
Rhizobium loti (strain MAFF303099) (Mesorhizobium loti)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Protein inferred from homologyi

Functioni

Involved in beta-(1-->2)glucan export. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation (By similarity).By similarity

Catalytic activityi

ATP + H2O + beta-glucan(In) = ADP + phosphate + beta-glucan(Out).UniRule annotation

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Nucleotide bindingi368 – 375ATPUniRule annotation8

GO - Molecular functioni

Keywordsi

Molecular functionHydrolase
Biological processSugar transport, Transport
LigandATP-binding, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Beta-(1-->2)glucan export ATP-binding/permease protein NdvAUniRule annotation (EC:3.6.3.42UniRule annotation)
Gene namesi
Name:ndvAUniRule annotation
Ordered Locus Names:mlr8326
OrganismiRhizobium loti (strain MAFF303099) (Mesorhizobium loti)
Taxonomic identifieri266835 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesPhyllobacteriaceaeMesorhizobium
Proteomesi
  • UP000000552 Componenti: Chromosome

Subcellular locationi

  • Cell inner membrane UniRule annotation; Multi-pass membrane protein UniRule annotation

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei22 – 42HelicalUniRule annotationAdd BLAST21
Transmembranei55 – 75HelicalUniRule annotationAdd BLAST21
Transmembranei136 – 156HelicalUniRule annotationAdd BLAST21
Transmembranei158 – 178HelicalUniRule annotationAdd BLAST21
Transmembranei248 – 268HelicalUniRule annotationAdd BLAST21
Transmembranei275 – 295HelicalUniRule annotationAdd BLAST21

GO - Cellular componenti

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002902521 – 590Beta-(1-->2)glucan export ATP-binding/permease protein NdvAAdd BLAST590

Interactioni

Subunit structurei

Homodimer.UniRule annotation

Protein-protein interaction databases

STRINGi266835.mlr8326.

Structurei

3D structure databases

ProteinModelPortaliQ983H5.
SMRiQ983H5.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini21 – 301ABC transmembrane type-1UniRule annotationAdd BLAST281
Domaini335 – 569ABC transporterUniRule annotationAdd BLAST235

Domaini

In NdvA the ATP-binding domain (NBD) and the transmembrane domain (TMD) are fused.

Sequence similaritiesi

Belongs to the ABC transporter superfamily. Beta-(1-->2)glucan exporter (TC 3.A.1.108.1) family. [View classification]UniRule annotation

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4105BZ1. Bacteria.
COG1132. LUCA.
KOiK06147.
OMAiMPVLSWW.
OrthoDBiPOG091H00DB.

Family and domain databases

InterProiView protein in InterPro
IPR003593. AAA+_ATPase.
IPR011527. ABC1_TM_dom.
IPR017902. ABC_bGlucan_ATPase.
IPR003439. ABC_transporter-like.
IPR017871. ABC_transporter_CS.
IPR005896. NdvA.
IPR027417. P-loop_NTPase.
PfamiView protein in Pfam
PF00664. ABC_membrane. 1 hit.
PF00005. ABC_tran. 1 hit.
SMARTiView protein in SMART
SM00382. AAA. 1 hit.
SUPFAMiSSF52540. SSF52540. 1 hit.
SSF90123. SSF90123. 1 hit.
TIGRFAMsiTIGR01192. chvA. 1 hit.
PROSITEiView protein in PROSITE
PS50929. ABC_TM1F. 1 hit.
PS00211. ABC_TRANSPORTER_1. 1 hit.
PS50893. ABC_TRANSPORTER_2. 1 hit.
PS51317. NDVA. 1 hit.

Sequencei

Sequence statusi: Complete.

Q983H5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSLLQIYWRA LGYLAADKRR VALICGANVA LAAIAILEPI MFGRVIDAIS
60 70 80 90 100
EHGSVFSTLA VWAGLGAFNV IAFVLVARGA DRFAHARRSE VLCQSFERVI
110 120 130 140 150
TMPLAWHHQR GTSNALHTLL RAVETLFSLW LEFMRQHLST AVALVLLVPT
160 170 180 190 200
ALSMDVRMSM VLLGLGVLYV GIGRLVMKRT KAGQAAVERH YHKVFAHVTD
210 220 230 240 250
SVSNVAVLQS YNRLGHEAET LRRYVKNLLD AQNPVLDWWA IANALNRLSS
260 270 280 290 300
TISMMVVLLI GAYLVTHGQL RVGDVIAFTG FATLLISRLD QMSAFANQIS
310 320 330 340 350
EARAKLEEFY KLEDSAADAA EPDGLRDLTN VTGHVRFEDV GFEFANSGQG
360 370 380 390 400
VSGVSFEVQA GQTVAIVGPT GAGKTTLINL LQRVFSPSTG RILIDGIDTR
410 420 430 440 450
TVTRKSLRHS IATVFQDAGL LNRSIEDNIR VGRADASNVE IHAAAVAAAA
460 470 480 490 500
QDFILAKSGG YDTVVGERGG QLSGGERQRI AIARAVLKDA PILVLDEATS
510 520 530 540 550
ALDVETEDRV KEAIDELRRD RTTFIIAHRL TTVRDADLVV FMDKGRVVEM
560 570 580 590
GGFAELSLRN GRFASLLRAG GLLNDEEVRR LSRSVQGEAA
Length:590
Mass (Da):64,220
Last modified:October 1, 2001 - v1
Checksum:i5890063165EAD79B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000012 Genomic DNA. Translation: BAB53906.1.
RefSeqiWP_010915532.1. NC_002678.2.

Genome annotation databases

EnsemblBacteriaiBAB53906; BAB53906; BAB53906.
KEGGimlo:mlr8326.
PATRICifig|266835.9.peg.6652.

Similar proteinsi

Entry informationi

Entry nameiNDVA_RHILO
AccessioniPrimary (citable) accession number: Q983H5
Entry historyiIntegrated into UniProtKB/Swiss-Prot: June 12, 2007
Last sequence update: October 1, 2001
Last modified: June 7, 2017
This is version 113 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families