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Q980R1

- Q980R1_SULSO

UniProt

Q980R1 - Q980R1_SULSO

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Protein
DNA-directed RNA polymerase
Gene
rpoB1, SSO0227
Organism
Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
Status
Unreviewed - Annotation score: 2 out of 5 - Experimental evidence at protein leveli

Functioni

Catalytic activityi

Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1).

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi586 – 5861ZincImported
Metal bindingi589 – 5891ZincImported
Metal bindingi604 – 6041ZincImported

GO - Molecular functioni

  1. DNA binding Source: InterPro
  2. DNA-directed RNA polymerase activity Source: UniProtKB-KW
  3. ribonucleoside binding Source: InterPro
  4. zinc ion binding Source: InterPro
Complete GO annotation...

GO - Biological processi

  1. transcription, DNA-templated Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

NucleotidyltransferaseUniRule annotationImported, Transferase

Keywords - Biological processi

Transcription

Keywords - Ligandi

Metal-bindingImported, ZincImported

Enzyme and pathway databases

BioCyciSSOL273057:GCH2-214-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
DNA-directed RNA polymeraseUniRule annotation (EC:2.7.7.6UniRule annotation)
Gene namesi
Name:rpoB1Imported
Ordered Locus Names:SSO0227Imported
OrganismiSulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)Imported
Taxonomic identifieri273057 [NCBI]
Taxonomic lineageiArchaeaCrenarchaeotaThermoproteiSulfolobalesSulfolobaceaeSulfolobus
ProteomesiUP000001974: Chromosome

Subcellular locationi

Keywords - Cellular componenti

DNA-directed RNA polymeraseUniRule annotationImported

Interactioni

Protein-protein interaction databases

DIPiDIP-60640N.
STRINGi273057.SSO0227.

Structurei

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2PMZX-ray3.40B/R4-649[»]
3HKZX-ray3.40B/J4-649[»]
ProteinModelPortaliQ980R1.

Miscellaneous databases

EvolutionaryTraceiQ980R1.

Family & Domainsi

Sequence similaritiesi

Belongs to the RNA polymerase beta chain family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0085.
HOGENOMiHOG000222962.
KOiK03044.
OMAiQKLYHMV.

Family and domain databases

Gene3Di2.40.270.10. 2 hits.
2.40.50.150. 1 hit.
InterProiIPR015712. DNA-dir_RNA_pol_su2.
IPR007120. DNA-dir_RNA_pol_su2_6.
IPR007121. RNA_pol_bsu_CS.
IPR007646. RNA_pol_Rpb2_4.
IPR007647. RNA_pol_Rpb2_5.
IPR007641. RNA_pol_Rpb2_7.
IPR014724. RNA_pol_RPB2_OB-fold.
IPR019969. RNAP_B.
[Graphical view]
PANTHERiPTHR20856. PTHR20856. 1 hit.
PfamiPF04566. RNA_pol_Rpb2_4. 1 hit.
PF04567. RNA_pol_Rpb2_5. 1 hit.
PF00562. RNA_pol_Rpb2_6. 1 hit.
PF04560. RNA_pol_Rpb2_7. 1 hit.
[Graphical view]
TIGRFAMsiTIGR03670. rpoB_arch. 1 hit.
PROSITEiPS01166. RNA_POL_BETA. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q980R1-1 [UniParc]FASTAAdd to Basket

« Hide

MLYGINERIV EKTLYEMGVV PVEEVIRRVT EGGEDQNEYL KWSKVILNGR    50
LIGYYQDGGE LANKIRERRR KGEISDEVNV GHIVTDFINE VHVNCDSGRV 100
RRPLIIVSNG NPLVTIEDIE KLESGAITFD DLVRQGKIEY LDAEEEENAY 150
VALEPNDLTP DHTHLEIWSP AILGITASII PYPEHNQSPR NTYQSAMAKQ 200
ALGLYAANYQ LRTDTRAHLL HYPQRPLVQT RALDIIGYTN RPAGNNAILA 250
VMSFTGYNME DSIIMNRSSV ERGMYRSTFF RLYSTEEVKY PGGQEDKIVM 300
PEAGVRGYKG KEYYRLLEDN GVVSPEVEVK GGDVLIGKVS PPRFLQEFKE 350
LSPEQAKRDT SIVTRHGEMG IVDLVLITET AEGNKLVKVR VRDLRIPTIG 400
DKFASRHGQK GVIGMLIPQV DMPYTVKGVV PDIILNPHAL PSRMTLGQIM 450
EGIAGKYAAL SGNIVDATPF YKTPIEQLQN EILRYGYLPD ATEVVYDGRT 500
GQKIKSRIYF GVVYYQKLHH MVADKLHARA RGPVQILTRQ PTEGRAREGG 550
LRFGEMERDC LIGFGTAMLL KDRLLDNSDR TMIYVCDQCG YIGWYDKNKN 600
KYVCPIHGDK SNLFPVTVSY AFKLLIQELM SMIISPRLVL EDKVGLSGG 649
Length:649
Mass (Da):73,124
Last modified:October 1, 2001 - v1
Checksum:i5221C683EA213126
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AE006641 Genomic DNA. Translation: AAK40567.1.
PIRiH90163.
RefSeqiNP_341777.1. NC_002754.1.

Genome annotation databases

EnsemblBacteriaiAAK40567; AAK40567; SSO0227.
GeneIDi1455377.
KEGGisso:SSO0227.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AE006641 Genomic DNA. Translation: AAK40567.1 .
PIRi H90163.
RefSeqi NP_341777.1. NC_002754.1.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
2PMZ X-ray 3.40 B/R 4-649 [» ]
3HKZ X-ray 3.40 B/J 4-649 [» ]
ProteinModelPortali Q980R1.
ModBasei Search...

Protein-protein interaction databases

DIPi DIP-60640N.
STRINGi 273057.SSO0227.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAK40567 ; AAK40567 ; SSO0227 .
GeneIDi 1455377.
KEGGi sso:SSO0227.

Phylogenomic databases

eggNOGi COG0085.
HOGENOMi HOG000222962.
KOi K03044.
OMAi QKLYHMV.

Enzyme and pathway databases

BioCyci SSOL273057:GCH2-214-MONOMER.

Miscellaneous databases

EvolutionaryTracei Q980R1.

Family and domain databases

Gene3Di 2.40.270.10. 2 hits.
2.40.50.150. 1 hit.
InterProi IPR015712. DNA-dir_RNA_pol_su2.
IPR007120. DNA-dir_RNA_pol_su2_6.
IPR007121. RNA_pol_bsu_CS.
IPR007646. RNA_pol_Rpb2_4.
IPR007647. RNA_pol_Rpb2_5.
IPR007641. RNA_pol_Rpb2_7.
IPR014724. RNA_pol_RPB2_OB-fold.
IPR019969. RNAP_B.
[Graphical view ]
PANTHERi PTHR20856. PTHR20856. 1 hit.
Pfami PF04566. RNA_pol_Rpb2_4. 1 hit.
PF04567. RNA_pol_Rpb2_5. 1 hit.
PF00562. RNA_pol_Rpb2_6. 1 hit.
PF04560. RNA_pol_Rpb2_7. 1 hit.
[Graphical view ]
TIGRFAMsi TIGR03670. rpoB_arch. 1 hit.
PROSITEi PS01166. RNA_POL_BETA. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 35092 / DSM 1617 / JCM 11322 / P2.
  2. "The X-ray crystal structure of RNA polymerase from Archaea."
    Hirata A., Klein B.J., Murakami K.S.
    Nature 451:851-854(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (3.40 ANGSTROMS) OF 4-649 IN COMPLEX WITH ZINC.

Entry informationi

Entry nameiQ980R1_SULSO
AccessioniPrimary (citable) accession number: Q980R1
Entry historyi
Integrated into UniProtKB/TrEMBL: October 1, 2001
Last sequence update: October 1, 2001
Last modified: July 9, 2014
This is version 84 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureImported, Complete proteome, Reference proteome

External Data

Dasty 3

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