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Q980R1 (Q980R1_SULSO) Unreviewed, UniProtKB/TrEMBL

Last modified March 19, 2014. Version 81. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
DNA-directed RNA polymerase RuleBase RU000431

EC=2.7.7.6 RuleBase RU000431
Gene names
Name:rpoB1 EMBL AAK40567.1
Ordered Locus Names:SSO0227 EMBL AAK40567.1
OrganismSulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) [Reference proteome] [HAMAP] EMBL AAK40567.1
Taxonomic identifier273057 [NCBI]
Taxonomic lineageArchaeaCrenarchaeotaThermoproteiSulfolobalesSulfolobaceaeSulfolobus

Protein attributes

Sequence length649 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Catalytic activity

Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1).

Sequence similarities

Belongs to the RNA polymerase beta chain family. RuleBase RU000434

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Metal binding5861Zinc PDB 3HKZ PDB 2PMZ
Metal binding5891Zinc PDB 3HKZ PDB 2PMZ
Metal binding6041Zinc PDB 3HKZ PDB 2PMZ

Sequences

Sequence LengthMass (Da)Tools
Q980R1 [UniParc].

Last modified October 1, 2001. Version 1.
Checksum: 5221C683EA213126

FASTA64973,124
        10         20         30         40         50         60 
MLYGINERIV EKTLYEMGVV PVEEVIRRVT EGGEDQNEYL KWSKVILNGR LIGYYQDGGE 

        70         80         90        100        110        120 
LANKIRERRR KGEISDEVNV GHIVTDFINE VHVNCDSGRV RRPLIIVSNG NPLVTIEDIE 

       130        140        150        160        170        180 
KLESGAITFD DLVRQGKIEY LDAEEEENAY VALEPNDLTP DHTHLEIWSP AILGITASII 

       190        200        210        220        230        240 
PYPEHNQSPR NTYQSAMAKQ ALGLYAANYQ LRTDTRAHLL HYPQRPLVQT RALDIIGYTN 

       250        260        270        280        290        300 
RPAGNNAILA VMSFTGYNME DSIIMNRSSV ERGMYRSTFF RLYSTEEVKY PGGQEDKIVM 

       310        320        330        340        350        360 
PEAGVRGYKG KEYYRLLEDN GVVSPEVEVK GGDVLIGKVS PPRFLQEFKE LSPEQAKRDT 

       370        380        390        400        410        420 
SIVTRHGEMG IVDLVLITET AEGNKLVKVR VRDLRIPTIG DKFASRHGQK GVIGMLIPQV 

       430        440        450        460        470        480 
DMPYTVKGVV PDIILNPHAL PSRMTLGQIM EGIAGKYAAL SGNIVDATPF YKTPIEQLQN 

       490        500        510        520        530        540 
EILRYGYLPD ATEVVYDGRT GQKIKSRIYF GVVYYQKLHH MVADKLHARA RGPVQILTRQ 

       550        560        570        580        590        600 
PTEGRAREGG LRFGEMERDC LIGFGTAMLL KDRLLDNSDR TMIYVCDQCG YIGWYDKNKN 

       610        620        630        640 
KYVCPIHGDK SNLFPVTVSY AFKLLIQELM SMIISPRLVL EDKVGLSGG 

« Hide

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AE006641 Genomic DNA. Translation: AAK40567.1.
PIRH90163.
RefSeqNP_341777.1. NC_002754.1.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
2PMZX-ray3.40B/R4-649[»]
3HKZX-ray3.40B/J4-649[»]
ProteinModelPortalQ980R1.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

DIPDIP-60640N.
STRING273057.SSO0227.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAK40567; AAK40567; SSO0227.
GeneID1455377.
KEGGsso:SSO0227.

Phylogenomic databases

eggNOGCOG0085.
HOGENOMHOG000222962.
KOK03044.
OMAQKLYHMV.
ProtClustDBPRK07225.

Enzyme and pathway databases

BioCycSSOL273057:GCH2-214-MONOMER.

Family and domain databases

Gene3D2.40.270.10. 2 hits.
2.40.50.150. 1 hit.
InterProIPR015712. DNA-dir_RNA_pol_su2.
IPR007120. DNA-dir_RNA_pol_su2_6.
IPR007121. RNA_pol_bsu_CS.
IPR007646. RNA_pol_Rpb2_4.
IPR007647. RNA_pol_Rpb2_5.
IPR007641. RNA_pol_Rpb2_7.
IPR014724. RNA_pol_RPB2_OB-fold.
IPR019969. RNAP_B.
[Graphical view]
PANTHERPTHR20856. PTHR20856. 1 hit.
PfamPF04566. RNA_pol_Rpb2_4. 1 hit.
PF04567. RNA_pol_Rpb2_5. 1 hit.
PF00562. RNA_pol_Rpb2_6. 1 hit.
PF04560. RNA_pol_Rpb2_7. 1 hit.
[Graphical view]
TIGRFAMsTIGR03670. rpoB_arch. 1 hit.
PROSITEPS01166. RNA_POL_BETA. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

EvolutionaryTraceQ980R1.

Entry information

Entry nameQ980R1_SULSO
AccessionPrimary (citable) accession number: Q980R1
Entry history
Integrated into UniProtKB/TrEMBL: October 1, 2001
Last sequence update: October 1, 2001
Last modified: March 19, 2014
This is version 81 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)