DNA-directed RNA polymerase, subunit B' (RpoB1) - Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)

Preferred order of sections

Names and origin

Protein names

Submitted name:
DNA-directed RNA polymerase, subunit B' (RpoB1) EMBL AAK40567.1
EC=2.7.7.6 EMBL AAK40567.1

Gene names

Name:	rpoB1 EMBL AAK40567.1
Ordered Locus Names:	SSO0227

Organism

Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) EMBL AAK40567.1

Taxonomic identifier

273057 [NCBI]

Taxonomic lineage

Archaea › Crenarchaeota › Thermoprotei › Sulfolobales › Sulfolobaceae › Sulfolobus

Protein attributes

Sequence length	649 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

Ontologies

Keywords
Biological process	Transcription
Cellular component	DNA-directed RNA polymerase EMBL AAK40567.1
Ligand	Metal-binding PDB 3HKZ PDB 2PMZ Zinc PDB 3HKZ PDB 2PMZ
Molecular function	Nucleotidyltransferase EMBL AAK40567.1 Transferase
Technical term	3D-structure PDB 3HKZ PDB 2PMZ Complete proteome Reference proteome
Gene Ontology (GO)
Molecular function	DNA binding Inferred from electronic annotation. Source: InterPro DNA-directed RNA polymerase activity Inferred from electronic annotation. Source: UniProtKB-KW ribonucleoside binding Inferred from electronic annotation. Source: InterPro zinc ion binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

Feature key

Position(s)

Length

Description

Graphical view

Feature identifier

Sites

Metal binding

586

1

Zinc PDB 3HKZ

Metal binding

589

1

Zinc PDB 3HKZ

Metal binding

604

1

Zinc PDB 3HKZ

Sequences

Sequence

Length

Mass (Da)

Tools

Q980R1 [UniParc].

Last modified October 1, 2001. Version 1.
Checksum: 5221C683EA213126
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FASTA

649

73,124

        10         20         30         40         50         60 
MLYGINERIV EKTLYEMGVV PVEEVIRRVT EGGEDQNEYL KWSKVILNGR LIGYYQDGGE 

        70         80         90        100        110        120 
LANKIRERRR KGEISDEVNV GHIVTDFINE VHVNCDSGRV RRPLIIVSNG NPLVTIEDIE 

       130        140        150        160        170        180 
KLESGAITFD DLVRQGKIEY LDAEEEENAY VALEPNDLTP DHTHLEIWSP AILGITASII 

       190        200        210        220        230        240 
PYPEHNQSPR NTYQSAMAKQ ALGLYAANYQ LRTDTRAHLL HYPQRPLVQT RALDIIGYTN 

       250        260        270        280        290        300 
RPAGNNAILA VMSFTGYNME DSIIMNRSSV ERGMYRSTFF RLYSTEEVKY PGGQEDKIVM 

       310        320        330        340        350        360 
PEAGVRGYKG KEYYRLLEDN GVVSPEVEVK GGDVLIGKVS PPRFLQEFKE LSPEQAKRDT 

       370        380        390        400        410        420 
SIVTRHGEMG IVDLVLITET AEGNKLVKVR VRDLRIPTIG DKFASRHGQK GVIGMLIPQV 

       430        440        450        460        470        480 
DMPYTVKGVV PDIILNPHAL PSRMTLGQIM EGIAGKYAAL SGNIVDATPF YKTPIEQLQN 

       490        500        510        520        530        540 
EILRYGYLPD ATEVVYDGRT GQKIKSRIYF GVVYYQKLHH MVADKLHARA RGPVQILTRQ 

       550        560        570        580        590        600 
PTEGRAREGG LRFGEMERDC LIGFGTAMLL KDRLLDNSDR TMIYVCDQCG YIGWYDKNKN 

       610        620        630        640 
KYVCPIHGDK SNLFPVTVSY AFKLLIQELM SMIISPRLVL EDKVGLSGG

« Hide

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"The complete genome of the crenarchaeon Sulfolobus solfataricus P2." She Q., Singh R.K., Confalonieri F., Zivanovic Y., Allard G., Awayez M.J., Chan-Weiher C.C.-Y., Clausen I.G., Curtis B.A., De Moors A., Erauso G., Fletcher C., Gordon P.M.K., Heikamp-de Jong I., Jeffries A.C., Kozera C.J., Medina N., Peng X. Van der Oost J. Proc. Natl. Acad. Sci. U.S.A. 98:7835-7840(2001) [PubMed: 11427726] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 35092 / DSM 1617 / JCM 11322 / P2.
[2]	"The X-ray crystal structure of RNA polymerase from Archaea." Hirata A., Klein B.J., Murakami K.S. Nature 451:851-854(2008) [PubMed: 18235446] [Abstract] Cited for: X-RAY CRYSTALLOGRAPHY (3.40 ANGSTROMS) OF 4-649 IN COMPLEX WITH ZINC.
+	Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

AE006641 Genomic DNA. Translation: AAK40567.1.

PIR

H90163.

RefSeq

NP_341777.1. NC_002754.1.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
2PMZ	X-ray	3.40	B/R	4-649	[»]
3HKZ	X-ray	3.40	B/J	4-649	[»]

ProteinModelPortal

Q980R1.

ModBase

Search...

Protocols and materials databases

StructuralBiologyKnowledgebase

Search...

Genome annotation databases

GeneID

1455377.

GenomeReviews

Gene locus SSO0227 in contig AE006641_GR.

KEGG

sso:SSO0227.

NMPDR

fig|273057.1.peg.200.

Phylogenomic databases

HOGENOM

HBG496836.

OMA

MSYEGYN.

ProtClustDB

PRK07225.

Enzyme and pathway databases

BioCyc

SSOL273057:SSO0227-MONOMER.

Family and domain databases

InterPro

IPR015712. DNA-dir_RNA_pol_su2.
IPR007120. DNA-dir_RNA_pol_su2_6.
IPR019969. DNA-dir_RNA_pol_su_B_arc.
IPR007121. RNA_pol_bsu_CS.
IPR007646. RNA_pol_Rpb2_4.
IPR007647. RNA_pol_Rpb2_5.
IPR007641. RNA_pol_Rpb2_7.
IPR014724. RNA_pol_RPB2_OB-fold.
[Graphical view]

Gene3D

G3DSA:2.40.270.10. G3DSA:2.40.270.10. 2 hits.
G3DSA:2.40.50.150. Ribosomal_L2. 1 hit.

KO

K03044.

PANTHER

PTHR20856. RNA_pol_I_sub2. 1 hit.

Pfam

PF04566. RNA_pol_Rpb2_4. 1 hit.
PF04567. RNA_pol_Rpb2_5. 1 hit.
PF00562. RNA_pol_Rpb2_6. 1 hit.
PF04560. RNA_pol_Rpb2_7. 1 hit.
[Graphical view]

TIGRFAMs

TIGR03670. RpoB_arch. 1 hit.

PROSITE

PS01166. RNA_POL_BETA. 1 hit.
[Graphical view]

ProtoNet

Search...

Entry information

Entry name

Q980R1_SULSO

Accession

Primary (citable) accession number: Q980R1

Entry history

Integrated into UniProtKB/TrEMBL:	October 1, 2001
Last sequence update:	October 1, 2001
Last modified:	January 25, 2012
This is version 67 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)