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Q980Q9

- RPOH_SULSO

UniProt

Q980Q9 - RPOH_SULSO

Protein

DNA-directed RNA polymerase subunit H

Gene

rpoH

Organism
Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli
  1. Functioni

    DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.

    Catalytic activityi

    Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1).UniRule annotation

    GO - Molecular functioni

    1. DNA binding Source: InterPro
    2. DNA-directed RNA polymerase activity Source: UniProtKB-KW

    GO - Biological processi

    1. transcription, DNA-templated Source: InterPro

    Keywords - Molecular functioni

    Nucleotidyltransferase, Transferase

    Keywords - Biological processi

    Transcription

    Enzyme and pathway databases

    BioCyciSSOL273057:GCH2-216-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    DNA-directed RNA polymerase subunit HUniRule annotation (EC:2.7.7.6UniRule annotation)
    Gene namesi
    Name:rpoHUniRule annotation
    Ordered Locus Names:SSO5468
    OrganismiSulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
    Taxonomic identifieri273057 [NCBI]
    Taxonomic lineageiArchaeaCrenarchaeotaThermoproteiSulfolobalesSulfolobaceaeSulfolobus
    ProteomesiUP000001974: Chromosome

    Subcellular locationi

    Keywords - Cellular componenti

    DNA-directed RNA polymerase

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 8484DNA-directed RNA polymerase subunit HPRO_0000146104Add
    BLAST

    Interactioni

    Protein-protein interaction databases

    DIPiDIP-60641N.
    STRINGi273057.SSO5468.

    Structurei

    Secondary structure

    1
    84
    Legend: HelixTurnBeta strand
    Show more details
    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Beta strandi14 – 163
    Turni25 – 273
    Helixi28 – 347
    Beta strandi41 – 433
    Turni50 – 567
    Beta strandi59 – 613
    Beta strandi63 – 675
    Beta strandi70 – 734
    Beta strandi75 – 784

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    2PMZX-ray3.40H/V1-84[»]
    3HKZX-ray3.40H/T1-84[»]
    ProteinModelPortaliQ980Q9.
    SMRiQ980Q9. Positions 9-82.
    ModBaseiSearch...
    MobiDBiSearch...

    Miscellaneous databases

    EvolutionaryTraceiQ980Q9.

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the archaeal RpoH/eukaryotic RPB5 RNA polymerase subunit family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG2012.
    HOGENOMiHOG000109413.
    KOiK03053.
    OMAiNCISQES.

    Family and domain databases

    Gene3Di3.90.940.20. 1 hit.
    HAMAPiMF_00025. RNApol_RpoH_RPB5.
    InterProiIPR000783. RNA_pol_subH/Rpb5_C.
    IPR020608. RNA_pol_subH/Rpb5_CS.
    IPR020609. RpoH/RPB5.
    [Graphical view]
    PfamiPF01191. RNA_pol_Rpb5_C. 1 hit.
    [Graphical view]
    ProDomiPD005155. RNA_pol_subH/Rpb5_C. 1 hit.
    [Graphical view] [Entries sharing at least one domain]
    SUPFAMiSSF55287. SSF55287. 1 hit.
    PROSITEiPS01110. RNA_POL_H_23KD. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q980Q9-1 [UniParc]FASTAAdd to Basket

    « Hide

    MRGSSNKKID PRIHYLVPKH EVLNIDEAYK ILKELGIRPE QLPWIRASDP   50
    VARSINAKPG DIIRIIRKSQ LYGEVVSYRY VISG 84
    Length:84
    Mass (Da):9,670
    Last modified:October 1, 2001 - v1
    Checksum:i2873A2053F864712
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE006641 Genomic DNA. Translation: AAK40569.1.
    PIRiB90164.
    RefSeqiNP_341779.1. NC_002754.1.

    Genome annotation databases

    EnsemblBacteriaiAAK40569; AAK40569; SSO5468.
    GeneIDi1455379.
    KEGGisso:SSO5468.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE006641 Genomic DNA. Translation: AAK40569.1 .
    PIRi B90164.
    RefSeqi NP_341779.1. NC_002754.1.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    2PMZ X-ray 3.40 H/V 1-84 [» ]
    3HKZ X-ray 3.40 H/T 1-84 [» ]
    ProteinModelPortali Q980Q9.
    SMRi Q980Q9. Positions 9-82.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    DIPi DIP-60641N.
    STRINGi 273057.SSO5468.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAK40569 ; AAK40569 ; SSO5468 .
    GeneIDi 1455379.
    KEGGi sso:SSO5468.

    Phylogenomic databases

    eggNOGi COG2012.
    HOGENOMi HOG000109413.
    KOi K03053.
    OMAi NCISQES.

    Enzyme and pathway databases

    BioCyci SSOL273057:GCH2-216-MONOMER.

    Miscellaneous databases

    EvolutionaryTracei Q980Q9.

    Family and domain databases

    Gene3Di 3.90.940.20. 1 hit.
    HAMAPi MF_00025. RNApol_RpoH_RPB5.
    InterProi IPR000783. RNA_pol_subH/Rpb5_C.
    IPR020608. RNA_pol_subH/Rpb5_CS.
    IPR020609. RpoH/RPB5.
    [Graphical view ]
    Pfami PF01191. RNA_pol_Rpb5_C. 1 hit.
    [Graphical view ]
    ProDomi PD005155. RNA_pol_subH/Rpb5_C. 1 hit.
    [Graphical view ] [Entries sharing at least one domain ]
    SUPFAMi SSF55287. SSF55287. 1 hit.
    PROSITEi PS01110. RNA_POL_H_23KD. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 35092 / DSM 1617 / JCM 11322 / P2.
    2. "The X-ray crystal structure of RNA polymerase from Archaea."
      Hirata A., Klein B.J., Murakami K.S.
      Nature 451:851-854(2008) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (3.4 ANGSTROMS) OF THE RNA POLYMERASE COMPLEX.

    Entry informationi

    Entry nameiRPOH_SULSO
    AccessioniPrimary (citable) accession number: Q980Q9
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: April 3, 2002
    Last sequence update: October 1, 2001
    Last modified: October 1, 2014
    This is version 78 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    3D-structure, Complete proteome, Reference proteome

    Documents

    1. PDB cross-references
      Index of Protein Data Bank (PDB) cross-references
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3