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Q980Q9 (RPOH_SULSO) Reviewed, UniProtKB/Swiss-Prot

Last modified May 14, 2014. Version 77. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
DNA-directed RNA polymerase subunit H

EC=2.7.7.6
Gene names
Name:rpoH
Ordered Locus Names:SSO5468
OrganismSulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) [Reference proteome] [HAMAP]
Taxonomic identifier273057 [NCBI]
Taxonomic lineageArchaeaCrenarchaeotaThermoproteiSulfolobalesSulfolobaceaeSulfolobus

Protein attributes

Sequence length84 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Function

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. HAMAP-Rule MF_00025

Catalytic activity

Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). HAMAP-Rule MF_00025

Sequence similarities

Belongs to the archaeal RpoH/eukaryotic RPB5 RNA polymerase subunit family.

Ontologies

Keywords
   Biological processTranscription
   Cellular componentDNA-directed RNA polymerase
   Molecular functionNucleotidyltransferase
Transferase
   Technical term3D-structure
Complete proteome
Reference proteome
Gene Ontology (GO)
   Biological_processtranscription, DNA-templated

Inferred from electronic annotation. Source: InterPro

   Molecular_functionDNA binding

Inferred from electronic annotation. Source: InterPro

DNA-directed RNA polymerase activity

Inferred from electronic annotation. Source: UniProtKB-KW

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 8484DNA-directed RNA polymerase subunit H HAMAP-Rule MF_00025
PRO_0000146104

Secondary structure

.................. 84
Helix Strand Turn

Details...

Sequences

Sequence LengthMass (Da)Tools
Q980Q9 [UniParc].

Last modified October 1, 2001. Version 1.
Checksum: 2873A2053F864712

FASTA849,670
        10         20         30         40         50         60 
MRGSSNKKID PRIHYLVPKH EVLNIDEAYK ILKELGIRPE QLPWIRASDP VARSINAKPG 

        70         80 
DIIRIIRKSQ LYGEVVSYRY VISG 

« Hide

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AE006641 Genomic DNA. Translation: AAK40569.1.
PIRB90164.
RefSeqNP_341779.1. NC_002754.1.

3D structure databases

PDBe
RCSB-PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
2PMZX-ray3.40H/V1-84[»]
3HKZX-ray3.40H/T1-84[»]
ProteinModelPortalQ980Q9.
SMRQ980Q9. Positions 9-82.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

DIPDIP-60641N.
STRING273057.SSO5468.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAK40569; AAK40569; SSO5468.
GeneID1455379.
KEGGsso:SSO5468.

Phylogenomic databases

eggNOGCOG2012.
HOGENOMHOG000109413.
KOK03053.
OMANCISQES.

Enzyme and pathway databases

BioCycSSOL273057:GCH2-216-MONOMER.

Family and domain databases

Gene3D3.90.940.20. 1 hit.
HAMAPMF_00025. RNApol_RpoH_RPB5.
InterProIPR000783. RNA_pol_subH/Rpb5_C.
IPR020608. RNA_pol_subH/Rpb5_CS.
IPR020609. RpoH/RPB5.
[Graphical view]
PfamPF01191. RNA_pol_Rpb5_C. 1 hit.
[Graphical view]
ProDomPD005155. RNA_pol_subH/Rpb5_C. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMSSF55287. SSF55287. 1 hit.
PROSITEPS01110. RNA_POL_H_23KD. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

EvolutionaryTraceQ980Q9.

Entry information

Entry nameRPOH_SULSO
AccessionPrimary (citable) accession number: Q980Q9
Entry history
Integrated into UniProtKB/Swiss-Prot: April 3, 2002
Last sequence update: October 1, 2001
Last modified: May 14, 2014
This is version 77 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

PDB cross-references

Index of Protein Data Bank (PDB) cross-references