Q980K2 (Q980K2_SULSO) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
DNA-directed RNA polymerase subunit PIRNR PIRNR005586
EC=2.7.7.6 PIRNR PIRNR005586

Gene names

Name:	rpoM-1 EMBL AAK40629.1
Ordered Locus Names:	SSO0291

Organism

Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) EMBL AAK40629.1

Taxonomic identifier

273057 [NCBI]

Taxonomic lineage

Archaea › Crenarchaeota › Thermoprotei › Sulfolobales › Sulfolobaceae › Sulfolobus

Protein attributes

Sequence length	114 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates By similarity. PIRNR PIRNR005586
Catalytic activity	Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). PIRNR PIRNR005586
Subunit structure	Component of the RNA polymerase By similarity. PIRNR PIRNR005586
Sequence similarities	Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. RuleBase RU003474 PIRNR PIRNR005586

Ontologies

Keywords
Biological process	Transcription
Cellular component	DNA-directed RNA polymerase RuleBase RU003474 PIRNR PIRNR005586 EMBL AAK40629.1
Domain	Zinc-finger RuleBase RU004353
Ligand	Metal-binding Zinc
Molecular function	Nucleotidyltransferase EMBL AAK40629.1 Transferase
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Molecular function	DNA binding Inferred from electronic annotation. Source: InterPro DNA-directed RNA polymerase activity Inferred from electronic annotation. Source: UniProtKB-KW sequence-specific DNA binding transcription factor activity Inferred from electronic annotation. Source: InterPro zinc ion binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q980K2 [UniParc]. Last modified October 1, 2001. Version 1. Checksum: 468A4680CA4AEED2	FASTA	114	13,206
	10 20 30 40 50 60 MIVVKFCPKC NSMMVPKKSN GKNVYRCTKC GYEKEVPETT IVVTSKVKHS IKEKTLVLEE 70 80 90 100 110 EEMPSGAQKI KGVLCPSCKN DEAYFWILQT RRADEPPTRF YKCTKCGKVW REYE

References

[1]

"The complete genome of the crenarchaeon Sulfolobus solfataricus P2." She Q., Singh R.K., Confalonieri F., Zivanovic Y., Allard G., Awayez M.J., Chan-Weiher C.C.-Y., Clausen I.G., Curtis B.A., De Moors A., Erauso G., Fletcher C., Gordon P.M.K., Heikamp-de Jong I., Jeffries A.C., Kozera C.J., Medina N., Peng X. , Thi-Ngoc H.P., Redder P., Schenk M.E., Theriault C., Tolstrup N., Charlebois R.L., Doolittle W.F., Duguet M., Gaasterland T., Garrett R.A., Ragan M.A., Sensen C.W., Van der Oost J. Proc. Natl. Acad. Sci. U.S.A. 98:7835-7840(2001) [PubMed: 11427726] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 35092 / DSM 1617 / JCM 11322 / P2.

+

Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AE006641 Genomic DNA. Translation: AAK40629.1.
PIR	F90171.
RefSeq	NP_341839.1. NC_002754.1.
3D structure databases
HSSP	HSSP built from PDB template 1QYP based on UniProtKB Q56254.
ProteinModelPortal	Q980K2.
SMR	Q980K2. Positions 73-114.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	1455439.
GenomeReviews	Gene locus SSO0291 in contig AE006641_GR.
KEGG	sso:SSO0291.
NMPDR	fig|273057.1.peg.262.
Phylogenomic databases
HOGENOM	HBG717463.
OMA	TCGNVLI.
ProtClustDB	CLSK883628.
Enzyme and pathway databases
BioCyc	SSOL273057:SSO0291-MONOMER.
Family and domain databases
InterPro	IPR019761. DNA-dir_RNA_pol-M_15_CS. IPR001529. DNA-dir_RNA_pol_M/15kDasu. IPR006288. DNA-dir_RNA_pol_suM_arc. IPR012164. DNA-dir_RNApol_C11. IPR001222. Znf_TFIIS. [Graphical view]
KO	K03057.
Pfam	PF02150. RNA_POL_M_15KD. 1 hit. PF01096. TFIIS_C. 1 hit. [Graphical view]
PIRSF	PIRSF005586. RNApol_RpoM. 1 hit.
SMART	SM00661. RPOL9. 1 hit. SM00440. ZnF_C2C2. 1 hit. [Graphical view]
TIGRFAMs	TIGR01384. TFS_arch. 1 hit.
PROSITE	PS01030. RNA_POL_M_15KD. 1 hit. PS00466. ZF_TFIIS_1. 1 hit. PS51133. ZF_TFIIS_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q980K2_SULSO

Accession

Primary (citable) accession number: Q980K2

Entry history

Integrated into UniProtKB/TrEMBL:	October 1, 2001
Last sequence update:	October 1, 2001
Last modified:	December 14, 2011
This is version 65 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)