Q980A3 (Q980A3_SULSO) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
DNA-directed RNA polymerase, subunit E' (RpoE1) EMBL AAK40742.1
EC=2.7.7.6 EMBL AAK40742.1

Gene names

Name:	rpoE1 EMBL AAK40742.1
Ordered Locus Names:	SSO0415

Organism

Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) EMBL AAK40742.1

Taxonomic identifier

273057 [NCBI]

Taxonomic lineage

Archaea › Crenarchaeota › Thermoprotei › Sulfolobales › Sulfolobaceae › Sulfolobus

Protein attributes

Sequence length	180 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

Ontologies

Keywords
Biological process	Transcription
Cellular component	DNA-directed RNA polymerase EMBL AAK40742.1
Molecular function	Nucleotidyltransferase EMBL AAK40742.1 Transferase
Technical term	3D-structure PDB 2PMZ PDB 3HKZ Complete proteome Reference proteome
Gene Ontology (GO)
Molecular function	DNA binding Inferred from electronic annotation. Source: InterPro DNA-directed RNA polymerase activity Inferred from electronic annotation. Source: UniProtKB-KW RNA binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q980A3 [UniParc]. Last modified October 1, 2001. Version 1. Checksum: 2351BE9ADA4847C7	FASTA	180	20,329
	10 20 30 40 50 60 MYKLIKARSI VRIPPNEFGK PLNEIALNEL RQQYQEKILK DLGLVLAILN VKTSEEGILV 70 80 90 100 110 120 FGDGATYHEV EFDMITYVPV VQEVVEGEVL QVDNYGIFVN LGPMDGLVHI SQITDDTLKY 130 140 150 160 170 180 DNVRGIIFGE KSKKVIQKGD KVRARVISVA STVTGRLPRI ALTMRQPYLG KLEWITQTKK

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"The complete genome of the crenarchaeon Sulfolobus solfataricus P2." She Q., Singh R.K., Confalonieri F., Zivanovic Y., Allard G., Awayez M.J., Chan-Weiher C.C.-Y., Clausen I.G., Curtis B.A., De Moors A., Erauso G., Fletcher C., Gordon P.M.K., Heikamp-de Jong I., Jeffries A.C., Kozera C.J., Medina N., Peng X. , Thi-Ngoc H.P., Redder P., Schenk M.E., Theriault C., Tolstrup N., Charlebois R.L., Doolittle W.F., Duguet M., Gaasterland T., Garrett R.A., Ragan M.A., Sensen C.W., Van der Oost J. Proc. Natl. Acad. Sci. U.S.A. 98:7835-7840(2001) [PubMed: 11427726] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 35092 / DSM 1617 / JCM 11322 / P2.
[2]	"The X-ray crystal structure of RNA polymerase from Archaea." Hirata A., Klein B.J., Murakami K.S. Nature 451:851-854(2008) [PubMed: 18235446] [Abstract] Cited for: X-RAY CRYSTALLOGRAPHY (3.40 ANGSTROMS).
+	Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

AE006641 Genomic DNA. Translation: AAK40742.1.

PIR

G90185.

RefSeq

NP_341952.1. NC_002754.1.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
2PMZ	X-ray	3.40	E/T	1-180	[»]
3HKZ	X-ray	3.40	E/Q	1-180	[»]

ProteinModelPortal

Q980A3.

SMR

Q980A3. Positions 1-180.

ModBase

Search...

Protocols and materials databases

StructuralBiologyKnowledgebase

Search...

Genome annotation databases

GeneID

1455552.

GenomeReviews

Gene locus SSO0415 in contig AE006641_GR.

KEGG

sso:SSO0415.

NMPDR

fig|273057.1.peg.375.

Phylogenomic databases

HOGENOM

HBG512792.

OMA

PRDSKIG.

ProtClustDB

PRK08563.

Enzyme and pathway databases

BioCyc

SSOL273057:SSO0415-MONOMER.

Family and domain databases

InterPro

IPR004519. DNA-dir_RNA_polE.
IPR012340. NA-bd_OB-fold.
IPR016027. NA-bd_OB-fold-like.
IPR003029. Rbsml_prot_S1_RNA-bd_dom.
IPR022967. RNA-binding_domain_S1.
IPR005576. RNA_pol_Rpb7_N.
[Graphical view]

Gene3D

G3DSA:2.40.50.140. OB_NA_bd_sub. 1 hit.
G3DSA:3.30.1490.120. RNA_pol_Rpb7_N. 1 hit.

KO

K03049.

Pfam

PF03876. RNA_pol_Rpb7_N. 1 hit.
PF00575. S1. 1 hit.
[Graphical view]

SMART

SM00316. S1. 1 hit.
[Graphical view]

SUPFAM

SSF50249. Nucleic_acid_OB. 1 hit.
SSF88798. RNA_pol_Rpb7_N. 1 hit.

TIGRFAMs

TIGR00448. RpoE. 1 hit.

PROSITE

PS50126. S1. 1 hit.
[Graphical view]

ProtoNet

Search...

Entry information

Entry name

Q980A3_SULSO

Accession

Primary (citable) accession number: Q980A3

Entry history

Integrated into UniProtKB/TrEMBL:	October 1, 2001
Last sequence update:	October 1, 2001
Last modified:	November 16, 2011
This is version 53 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)