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Q97ZX7

- RPOP_SULSO

UniProt

Q97ZX7 - RPOP_SULSO

Protein

DNA-directed RNA polymerase subunit P

Gene

rpoP

Organism
Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at protein leveli
  1. Functioni

    DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.

    Catalytic activityi

    Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1).UniRule annotation

    Regions

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Zinc fingeri6 – 2924C4-typeUniRule annotationAdd
    BLAST

    GO - Molecular functioni

    1. DNA binding Source: UniProtKB-HAMAP
    2. DNA-directed RNA polymerase activity Source: UniProtKB-HAMAP
    3. metal ion binding Source: UniProtKB-KW

    GO - Biological processi

    1. transcription, DNA-templated Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Nucleotidyltransferase, Transferase

    Keywords - Biological processi

    Transcription

    Keywords - Ligandi

    Metal-binding, Zinc

    Enzyme and pathway databases

    BioCyciSSOL273057:GCH2-427-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    DNA-directed RNA polymerase subunit PUniRule annotation (EC:2.7.7.6UniRule annotation)
    Gene namesi
    Name:rpoPUniRule annotation
    Ordered Locus Names:SSO5865
    OrganismiSulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
    Taxonomic identifieri273057 [NCBI]
    Taxonomic lineageiArchaeaCrenarchaeotaThermoproteiSulfolobalesSulfolobaceaeSulfolobus
    ProteomesiUP000001974: Chromosome

    Subcellular locationi

    Keywords - Cellular componenti

    DNA-directed RNA polymerase

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 4848DNA-directed RNA polymerase subunit PPRO_0000159767Add
    BLAST

    Interactioni

    Protein-protein interaction databases

    DIPiDIP-60645N.
    STRINGi273057.SSO5865.

    Structurei

    Secondary structure

    1
    48
    Legend: HelixTurnBeta strand
    Show more details
    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Beta strandi10 – 123
    Beta strandi22 – 243
    Beta strandi43 – 464

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    2PMZX-ray3.40P/Z1-48[»]
    3HKZX-ray3.40P/X1-48[»]
    ProteinModelPortaliQ97ZX7.
    SMRiQ97ZX7. Positions 6-48.
    ModBaseiSearch...
    MobiDBiSearch...

    Miscellaneous databases

    EvolutionaryTraceiQ97ZX7.

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the archaeal RpoP/eukaryotic RPC10 RNA polymerase subunit family.UniRule annotation

    Zinc finger

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Zinc fingeri6 – 2924C4-typeUniRule annotationAdd
    BLAST

    Keywords - Domaini

    Zinc-finger

    Phylogenomic databases

    eggNOGiCOG1996.
    HOGENOMiHOG000222612.
    KOiK03059.
    OMAiPLISCAR.

    Family and domain databases

    Gene3Di2.20.28.30. 1 hit.
    HAMAPiMF_00615. RNApol_arch_P.
    InterProiIPR023464. RNAP_P.
    IPR006591. RNAP_P/RPABC4.
    IPR029040. RPABC4/Spt4.
    [Graphical view]
    PfamiPF03604. DNA_RNApol_7kD. 1 hit.
    [Graphical view]
    SMARTiSM00659. RPOLCX. 1 hit.
    [Graphical view]
    SUPFAMiSSF63393. SSF63393. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Q97ZX7-1 [UniParc]FASTAAdd to Basket

    « Hide

    MAVYRCGKCW KTFTDEQLKV LPGVRCPYCG YKIIFMVRKP TIKIVKAI     48
    Length:48
    Mass (Da):5,597
    Last modified:October 1, 2001 - v1
    Checksum:iC822E342B8BEFF21
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE006641 Genomic DNA. Translation: AAK40770.1.
    PIRiC90189.
    RefSeqiNP_341980.1. NC_002754.1.

    Genome annotation databases

    EnsemblBacteriaiAAK40770; AAK40770; SSO5865.
    GeneIDi1455580.
    KEGGisso:SSO5865.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE006641 Genomic DNA. Translation: AAK40770.1 .
    PIRi C90189.
    RefSeqi NP_341980.1. NC_002754.1.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    2PMZ X-ray 3.40 P/Z 1-48 [» ]
    3HKZ X-ray 3.40 P/X 1-48 [» ]
    ProteinModelPortali Q97ZX7.
    SMRi Q97ZX7. Positions 6-48.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    DIPi DIP-60645N.
    STRINGi 273057.SSO5865.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAK40770 ; AAK40770 ; SSO5865 .
    GeneIDi 1455580.
    KEGGi sso:SSO5865.

    Phylogenomic databases

    eggNOGi COG1996.
    HOGENOMi HOG000222612.
    KOi K03059.
    OMAi PLISCAR.

    Enzyme and pathway databases

    BioCyci SSOL273057:GCH2-427-MONOMER.

    Miscellaneous databases

    EvolutionaryTracei Q97ZX7.

    Family and domain databases

    Gene3Di 2.20.28.30. 1 hit.
    HAMAPi MF_00615. RNApol_arch_P.
    InterProi IPR023464. RNAP_P.
    IPR006591. RNAP_P/RPABC4.
    IPR029040. RPABC4/Spt4.
    [Graphical view ]
    Pfami PF03604. DNA_RNApol_7kD. 1 hit.
    [Graphical view ]
    SMARTi SM00659. RPOLCX. 1 hit.
    [Graphical view ]
    SUPFAMi SSF63393. SSF63393. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 35092 / DSM 1617 / JCM 11322 / P2.
    2. "The X-ray crystal structure of RNA polymerase from Archaea."
      Hirata A., Klein B.J., Murakami K.S.
      Nature 451:851-854(2008) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (3.4 ANGSTROMS) OF THE RNA POLYMERASE COMPLEX.

    Entry informationi

    Entry nameiRPOP_SULSO
    AccessioniPrimary (citable) accession number: Q97ZX7
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: February 12, 2003
    Last sequence update: October 1, 2001
    Last modified: October 1, 2014
    This is version 69 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    3D-structure, Complete proteome, Reference proteome

    Documents

    1. PDB cross-references
      Index of Protein Data Bank (PDB) cross-references
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3