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Q97ZX7

- RPOP_SULSO

UniProt

Q97ZX7 - RPOP_SULSO

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Protein

DNA-directed RNA polymerase subunit P

Gene

rpoP

Organism
Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at protein leveli

Functioni

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.

Catalytic activityi

Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1).UniRule annotation

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri6 – 2924C4-typeUniRule annotationAdd
BLAST

GO - Molecular functioni

  1. DNA binding Source: UniProtKB-HAMAP
  2. DNA-directed RNA polymerase activity Source: UniProtKB-HAMAP
  3. metal ion binding Source: UniProtKB-KW

GO - Biological processi

  1. transcription, DNA-templated Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Nucleotidyltransferase, Transferase

Keywords - Biological processi

Transcription

Keywords - Ligandi

Metal-binding, Zinc

Enzyme and pathway databases

BioCyciSSOL273057:GCH2-427-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
DNA-directed RNA polymerase subunit PUniRule annotation (EC:2.7.7.6UniRule annotation)
Gene namesi
Name:rpoPUniRule annotation
Ordered Locus Names:SSO5865
OrganismiSulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
Taxonomic identifieri273057 [NCBI]
Taxonomic lineageiArchaeaCrenarchaeotaThermoproteiSulfolobalesSulfolobaceaeSulfolobus
ProteomesiUP000001974: Chromosome

Subcellular locationi

Keywords - Cellular componenti

DNA-directed RNA polymerase

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 4848DNA-directed RNA polymerase subunit PPRO_0000159767Add
BLAST

Interactioni

Protein-protein interaction databases

DIPiDIP-60645N.
STRINGi273057.SSO5865.

Structurei

Secondary structure

1
48
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi10 – 123Combined sources
Beta strandi22 – 243Combined sources
Beta strandi43 – 464Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2PMZX-ray3.40P/Z1-48[»]
3HKZX-ray3.40P/X1-48[»]
ProteinModelPortaliQ97ZX7.
SMRiQ97ZX7. Positions 6-48.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ97ZX7.

Family & Domainsi

Sequence similaritiesi

Belongs to the archaeal RpoP/eukaryotic RPC10 RNA polymerase subunit family.UniRule annotation

Zinc finger

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri6 – 2924C4-typeUniRule annotationAdd
BLAST

Keywords - Domaini

Zinc-finger

Phylogenomic databases

eggNOGiCOG1996.
HOGENOMiHOG000222612.
InParanoidiQ97ZX7.
KOiK03059.
OMAiPLISCAR.

Family and domain databases

Gene3Di2.20.28.30. 1 hit.
HAMAPiMF_00615. RNApol_arch_P.
InterProiIPR023464. RNAP_P.
IPR006591. RNAP_P/RPABC4.
IPR029040. RPABC4/Spt4.
[Graphical view]
PfamiPF03604. DNA_RNApol_7kD. 1 hit.
[Graphical view]
SMARTiSM00659. RPOLCX. 1 hit.
[Graphical view]
SUPFAMiSSF63393. SSF63393. 1 hit.

Sequencei

Sequence statusi: Complete.

Q97ZX7-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40 
MAVYRCGKCW KTFTDEQLKV LPGVRCPYCG YKIIFMVRKP TIKIVKAI
Length:48
Mass (Da):5,597
Last modified:October 1, 2001 - v1
Checksum:iC822E342B8BEFF21
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE006641 Genomic DNA. Translation: AAK40770.1.
PIRiC90189.
RefSeqiNP_341980.1. NC_002754.1.

Genome annotation databases

EnsemblBacteriaiAAK40770; AAK40770; SSO5865.
GeneIDi1455580.
KEGGisso:SSO5865.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE006641 Genomic DNA. Translation: AAK40770.1 .
PIRi C90189.
RefSeqi NP_341980.1. NC_002754.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
2PMZ X-ray 3.40 P/Z 1-48 [» ]
3HKZ X-ray 3.40 P/X 1-48 [» ]
ProteinModelPortali Q97ZX7.
SMRi Q97ZX7. Positions 6-48.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

DIPi DIP-60645N.
STRINGi 273057.SSO5865.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAK40770 ; AAK40770 ; SSO5865 .
GeneIDi 1455580.
KEGGi sso:SSO5865.

Phylogenomic databases

eggNOGi COG1996.
HOGENOMi HOG000222612.
InParanoidi Q97ZX7.
KOi K03059.
OMAi PLISCAR.

Enzyme and pathway databases

BioCyci SSOL273057:GCH2-427-MONOMER.

Miscellaneous databases

EvolutionaryTracei Q97ZX7.

Family and domain databases

Gene3Di 2.20.28.30. 1 hit.
HAMAPi MF_00615. RNApol_arch_P.
InterProi IPR023464. RNAP_P.
IPR006591. RNAP_P/RPABC4.
IPR029040. RPABC4/Spt4.
[Graphical view ]
Pfami PF03604. DNA_RNApol_7kD. 1 hit.
[Graphical view ]
SMARTi SM00659. RPOLCX. 1 hit.
[Graphical view ]
SUPFAMi SSF63393. SSF63393. 1 hit.
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 35092 / DSM 1617 / JCM 11322 / P2.
  2. "The X-ray crystal structure of RNA polymerase from Archaea."
    Hirata A., Klein B.J., Murakami K.S.
    Nature 451:851-854(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (3.4 ANGSTROMS) OF THE RNA POLYMERASE COMPLEX.

Entry informationi

Entry nameiRPOP_SULSO
AccessioniPrimary (citable) accession number: Q97ZX7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 12, 2003
Last sequence update: October 1, 2001
Last modified: November 26, 2014
This is version 71 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3