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Protein

DNA-directed RNA polymerase subunit P

Gene

rpoP

Organism
Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.

Catalytic activityi

Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1).UniRule annotation

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri6 – 29C4-typeUniRule annotationAdd BLAST24

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Nucleotidyltransferase, Transferase

Keywords - Biological processi

Transcription

Keywords - Ligandi

Metal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
DNA-directed RNA polymerase subunit PUniRule annotation (EC:2.7.7.6UniRule annotation)
Gene namesi
Name:rpoPUniRule annotation
Ordered Locus Names:SSO5865
OrganismiSulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
Taxonomic identifieri273057 [NCBI]
Taxonomic lineageiArchaeaCrenarchaeotaThermoproteiSulfolobalesSulfolobaceaeSulfolobus
Proteomesi
  • UP000001974 Componenti: Chromosome

Subcellular locationi

Keywords - Cellular componenti

DNA-directed RNA polymerase

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001597671 – 48DNA-directed RNA polymerase subunit PAdd BLAST48

Interactioni

Protein-protein interaction databases

DIPiDIP-60645N.
STRINGi273057.SSO5865.

Structurei

Secondary structure

148
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi10 – 12Combined sources3
Beta strandi22 – 24Combined sources3
Beta strandi43 – 46Combined sources4

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2PMZX-ray3.40P/Z1-48[»]
3HKZX-ray3.40P/X1-48[»]
ProteinModelPortaliQ97ZX7.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ97ZX7.

Family & Domainsi

Sequence similaritiesi

Belongs to the archaeal RpoP/eukaryotic RPC10 RNA polymerase subunit family.UniRule annotation

Zinc finger

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri6 – 29C4-typeUniRule annotationAdd BLAST24

Keywords - Domaini

Zinc-finger

Phylogenomic databases

eggNOGiarCOG04341. Archaea.
COG1996. LUCA.
HOGENOMiHOG000222612.
InParanoidiQ97ZX7.
KOiK03059.

Family and domain databases

Gene3Di2.20.28.30. 1 hit.
HAMAPiMF_00615. RNApol_arch_P. 1 hit.
InterProiIPR023464. RNAP_P.
IPR006591. RNAP_P/RPABC4.
IPR029040. RPABC4/Spt4.
[Graphical view]
SMARTiSM00659. RPOLCX. 1 hit.
[Graphical view]
SUPFAMiSSF63393. SSF63393. 1 hit.

Sequencei

Sequence statusi: Complete.

Q97ZX7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40 
MAVYRCGKCW KTFTDEQLKV LPGVRCPYCG YKIIFMVRKP TIKIVKAI
Length:48
Mass (Da):5,597
Last modified:October 1, 2001 - v1
Checksum:iC822E342B8BEFF21
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE006641 Genomic DNA. Translation: AAK40770.1.
PIRiC90189.

Genome annotation databases

EnsemblBacteriaiAAK40770; AAK40770; SSO5865.
KEGGisso:SSO5865.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE006641 Genomic DNA. Translation: AAK40770.1.
PIRiC90189.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2PMZX-ray3.40P/Z1-48[»]
3HKZX-ray3.40P/X1-48[»]
ProteinModelPortaliQ97ZX7.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

DIPiDIP-60645N.
STRINGi273057.SSO5865.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAK40770; AAK40770; SSO5865.
KEGGisso:SSO5865.

Phylogenomic databases

eggNOGiarCOG04341. Archaea.
COG1996. LUCA.
HOGENOMiHOG000222612.
InParanoidiQ97ZX7.
KOiK03059.

Miscellaneous databases

EvolutionaryTraceiQ97ZX7.

Family and domain databases

Gene3Di2.20.28.30. 1 hit.
HAMAPiMF_00615. RNApol_arch_P. 1 hit.
InterProiIPR023464. RNAP_P.
IPR006591. RNAP_P/RPABC4.
IPR029040. RPABC4/Spt4.
[Graphical view]
SMARTiSM00659. RPOLCX. 1 hit.
[Graphical view]
SUPFAMiSSF63393. SSF63393. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiRPOP_SULSO
AccessioniPrimary (citable) accession number: Q97ZX7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 12, 2003
Last sequence update: October 1, 2001
Last modified: November 2, 2016
This is version 78 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.