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Q97ZJ9

- RPOK_SULSO

UniProt

Q97ZJ9 - RPOK_SULSO

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Protein

DNA-directed RNA polymerase subunit K

Gene

rpoK

Organism
Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli

Functioni

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.

Catalytic activityi

Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1).

GO - Molecular functioni

  1. DNA binding Source: UniProtKB-HAMAP
  2. DNA-directed RNA polymerase activity Source: UniProtKB-HAMAP

GO - Biological processi

  1. transcription, DNA-templated Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Nucleotidyltransferase, Transferase

Keywords - Biological processi

Transcription

Enzyme and pathway databases

BioCyciSSOL273057:GCH2-864-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
DNA-directed RNA polymerase subunit K (EC:2.7.7.6)
Gene namesi
Name:rpoK
Ordered Locus Names:SSO6768
OrganismiSulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
Taxonomic identifieri273057 [NCBI]
Taxonomic lineageiArchaeaCrenarchaeotaThermoproteiSulfolobalesSulfolobaceaeSulfolobus
ProteomesiUP000001974: Chromosome

Subcellular locationi

Keywords - Cellular componenti

DNA-directed RNA polymerase

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 9595DNA-directed RNA polymerase subunit KPRO_0000133823Add
BLAST

Interactioni

Protein-protein interaction databases

DIPiDIP-60642N.
STRINGi273057.SSO6768.

Structurei

Secondary structure

1
95
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi14 – 229Combined sources
Helixi29 – 4416Combined sources
Beta strandi55 – 584Combined sources
Beta strandi60 – 634Combined sources
Turni64 – 663Combined sources
Helixi67 – 704Combined sources
Beta strandi77 – 815Combined sources
Beta strandi87 – 904Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2PMZX-ray3.40K/W1-95[»]
3HKZX-ray3.40K/U1-95[»]
ProteinModelPortaliQ97ZJ9.
SMRiQ97ZJ9. Positions 11-92.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ97ZJ9.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG1758.
HOGENOMiHOG000225272.
InParanoidiQ97ZJ9.
KOiK03055.
OMAiKRDFYPP.

Family and domain databases

Gene3Di3.90.940.10. 1 hit.
HAMAPiMF_00192. RNApol_arch_K.
InterProiIPR020708. DNA-dir_RNA_polK_14-18kDa_CS.
IPR006110. Pol_omega/K/RPB6.
IPR012293. RNAP_RPB6_omega.
IPR006111. RpoK/Rpb6.
[Graphical view]
PANTHERiPTHR10773. PTHR10773. 1 hit.
PfamiPF01192. RNA_pol_Rpb6. 1 hit.
[Graphical view]
PIRSFiPIRSF000778. RpoK/RPB6. 1 hit.
SUPFAMiSSF63562. SSF63562. 1 hit.
PROSITEiPS01111. RNA_POL_K_14KD. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q97ZJ9-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MGLERDEILS QDLHFNEVFI SLWQNRLTRY EIARVISARA LQLAMGAPAL
60 70 80 90
IDINNLSSTD VISIAEEEFR RGVLPITIRR RLPNGKIILL SLRKS
Length:95
Mass (Da):10,858
Last modified:August 14, 2001 - v1
Checksum:i2EA09FA9B1EAF55A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE006641 Genomic DNA. Translation: AAK41189.1.
PIRiF90241.
RefSeqiNP_342399.1. NC_002754.1.

Genome annotation databases

EnsemblBacteriaiAAK41189; AAK41189; SSO6768.
GeneIDi1455156.
KEGGisso:SSO6768.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE006641 Genomic DNA. Translation: AAK41189.1 .
PIRi F90241.
RefSeqi NP_342399.1. NC_002754.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
2PMZ X-ray 3.40 K/W 1-95 [» ]
3HKZ X-ray 3.40 K/U 1-95 [» ]
ProteinModelPortali Q97ZJ9.
SMRi Q97ZJ9. Positions 11-92.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

DIPi DIP-60642N.
STRINGi 273057.SSO6768.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAK41189 ; AAK41189 ; SSO6768 .
GeneIDi 1455156.
KEGGi sso:SSO6768.

Phylogenomic databases

eggNOGi COG1758.
HOGENOMi HOG000225272.
InParanoidi Q97ZJ9.
KOi K03055.
OMAi KRDFYPP.

Enzyme and pathway databases

BioCyci SSOL273057:GCH2-864-MONOMER.

Miscellaneous databases

EvolutionaryTracei Q97ZJ9.

Family and domain databases

Gene3Di 3.90.940.10. 1 hit.
HAMAPi MF_00192. RNApol_arch_K.
InterProi IPR020708. DNA-dir_RNA_polK_14-18kDa_CS.
IPR006110. Pol_omega/K/RPB6.
IPR012293. RNAP_RPB6_omega.
IPR006111. RpoK/Rpb6.
[Graphical view ]
PANTHERi PTHR10773. PTHR10773. 1 hit.
Pfami PF01192. RNA_pol_Rpb6. 1 hit.
[Graphical view ]
PIRSFi PIRSF000778. RpoK/RPB6. 1 hit.
SUPFAMi SSF63562. SSF63562. 1 hit.
PROSITEi PS01111. RNA_POL_K_14KD. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 35092 / DSM 1617 / JCM 11322 / P2.
  2. "The X-ray crystal structure of RNA polymerase from Archaea."
    Hirata A., Klein B.J., Murakami K.S.
    Nature 451:851-854(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (3.4 ANGSTROMS) OF THE RNA POLYMERASE COMPLEX.

Entry informationi

Entry nameiRPOK_SULSO
AccessioniPrimary (citable) accession number: Q97ZJ9
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 14, 2001
Last sequence update: August 14, 2001
Last modified: November 26, 2014
This is version 87 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3