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Q97ZJ9

- RPOK_SULSO

UniProt

Q97ZJ9 - RPOK_SULSO

Protein

DNA-directed RNA polymerase subunit K

Gene

rpoK

Organism
Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli
  1. Functioni

    DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.

    Catalytic activityi

    Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1).

    GO - Molecular functioni

    1. DNA binding Source: UniProtKB-HAMAP
    2. DNA-directed RNA polymerase activity Source: UniProtKB-HAMAP

    GO - Biological processi

    1. transcription, DNA-templated Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Nucleotidyltransferase, Transferase

    Keywords - Biological processi

    Transcription

    Enzyme and pathway databases

    BioCyciSSOL273057:GCH2-864-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    DNA-directed RNA polymerase subunit K (EC:2.7.7.6)
    Gene namesi
    Name:rpoK
    Ordered Locus Names:SSO6768
    OrganismiSulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
    Taxonomic identifieri273057 [NCBI]
    Taxonomic lineageiArchaeaCrenarchaeotaThermoproteiSulfolobalesSulfolobaceaeSulfolobus
    ProteomesiUP000001974: Chromosome

    Subcellular locationi

    Keywords - Cellular componenti

    DNA-directed RNA polymerase

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 9595DNA-directed RNA polymerase subunit KPRO_0000133823Add
    BLAST

    Interactioni

    Protein-protein interaction databases

    DIPiDIP-60642N.
    STRINGi273057.SSO6768.

    Structurei

    Secondary structure

    1
    95
    Legend: HelixTurnBeta strand
    Show more details
    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Helixi14 – 229
    Helixi29 – 4416
    Beta strandi55 – 584
    Beta strandi60 – 634
    Turni64 – 663
    Helixi67 – 704
    Beta strandi77 – 815
    Beta strandi87 – 904

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    2PMZX-ray3.40K/W1-95[»]
    3HKZX-ray3.40K/U1-95[»]
    ProteinModelPortaliQ97ZJ9.
    SMRiQ97ZJ9. Positions 11-92.
    ModBaseiSearch...
    MobiDBiSearch...

    Miscellaneous databases

    EvolutionaryTraceiQ97ZJ9.

    Family & Domainsi

    Sequence similaritiesi

    Phylogenomic databases

    eggNOGiCOG1758.
    HOGENOMiHOG000225272.
    KOiK03055.
    OMAiKRDFYPP.

    Family and domain databases

    Gene3Di3.90.940.10. 1 hit.
    HAMAPiMF_00192. RNApol_arch_K.
    InterProiIPR020708. DNA-dir_RNA_polK_14-18kDa_CS.
    IPR006110. Pol_omega/K/RPB6.
    IPR012293. RNAP_RPB6_omega.
    IPR006111. RpoK/Rpb6.
    [Graphical view]
    PANTHERiPTHR10773. PTHR10773. 1 hit.
    PfamiPF01192. RNA_pol_Rpb6. 1 hit.
    [Graphical view]
    PIRSFiPIRSF000778. RpoK/RPB6. 1 hit.
    SUPFAMiSSF63562. SSF63562. 1 hit.
    PROSITEiPS01111. RNA_POL_K_14KD. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q97ZJ9-1 [UniParc]FASTAAdd to Basket

    « Hide

    MGLERDEILS QDLHFNEVFI SLWQNRLTRY EIARVISARA LQLAMGAPAL   50
    IDINNLSSTD VISIAEEEFR RGVLPITIRR RLPNGKIILL SLRKS 95
    Length:95
    Mass (Da):10,858
    Last modified:August 14, 2001 - v1
    Checksum:i2EA09FA9B1EAF55A
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE006641 Genomic DNA. Translation: AAK41189.1.
    PIRiF90241.
    RefSeqiNP_342399.1. NC_002754.1.
    WP_009992332.1. NC_002754.1.

    Genome annotation databases

    EnsemblBacteriaiAAK41189; AAK41189; SSO6768.
    GeneIDi1455156.
    KEGGisso:SSO6768.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE006641 Genomic DNA. Translation: AAK41189.1 .
    PIRi F90241.
    RefSeqi NP_342399.1. NC_002754.1.
    WP_009992332.1. NC_002754.1.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    2PMZ X-ray 3.40 K/W 1-95 [» ]
    3HKZ X-ray 3.40 K/U 1-95 [» ]
    ProteinModelPortali Q97ZJ9.
    SMRi Q97ZJ9. Positions 11-92.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    DIPi DIP-60642N.
    STRINGi 273057.SSO6768.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAK41189 ; AAK41189 ; SSO6768 .
    GeneIDi 1455156.
    KEGGi sso:SSO6768.

    Phylogenomic databases

    eggNOGi COG1758.
    HOGENOMi HOG000225272.
    KOi K03055.
    OMAi KRDFYPP.

    Enzyme and pathway databases

    BioCyci SSOL273057:GCH2-864-MONOMER.

    Miscellaneous databases

    EvolutionaryTracei Q97ZJ9.

    Family and domain databases

    Gene3Di 3.90.940.10. 1 hit.
    HAMAPi MF_00192. RNApol_arch_K.
    InterProi IPR020708. DNA-dir_RNA_polK_14-18kDa_CS.
    IPR006110. Pol_omega/K/RPB6.
    IPR012293. RNAP_RPB6_omega.
    IPR006111. RpoK/Rpb6.
    [Graphical view ]
    PANTHERi PTHR10773. PTHR10773. 1 hit.
    Pfami PF01192. RNA_pol_Rpb6. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF000778. RpoK/RPB6. 1 hit.
    SUPFAMi SSF63562. SSF63562. 1 hit.
    PROSITEi PS01111. RNA_POL_K_14KD. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 35092 / DSM 1617 / JCM 11322 / P2.
    2. "The X-ray crystal structure of RNA polymerase from Archaea."
      Hirata A., Klein B.J., Murakami K.S.
      Nature 451:851-854(2008) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (3.4 ANGSTROMS) OF THE RNA POLYMERASE COMPLEX.

    Entry informationi

    Entry nameiRPOK_SULSO
    AccessioniPrimary (citable) accession number: Q97ZJ9
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: August 14, 2001
    Last sequence update: August 14, 2001
    Last modified: October 1, 2014
    This is version 85 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    3D-structure, Complete proteome, Reference proteome

    Documents

    1. PDB cross-references
      Index of Protein Data Bank (PDB) cross-references
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3