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Protein
Submitted name:

Pre mRNA splicing protein

Gene

SSO0939

Organism
Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Biological processi

  1. rRNA modification Source: GO_Central
Complete GO annotation...

Enzyme and pathway databases

BioCyciSSOL273057:GCH2-892-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Pre mRNA splicing proteinImported
Gene namesi
Ordered Locus Names:SSO0939Imported
OrganismiSulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)Imported
Taxonomic identifieri273057 [NCBI]
Taxonomic lineageiArchaeaCrenarchaeotaThermoproteiSulfolobalesSulfolobaceaeSulfolobus
ProteomesiUP000001974: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. box C/D snoRNP complex Source: GO_Central
Complete GO annotation...

Interactioni

Binary interactionsi

WithEntry#Exp.IntActNotes
flpAP580322EBI-2944135,EBI-2944159

Protein-protein interaction databases

DIPiDIP-48938N.
IntActiQ97ZH3. 1 interaction.
STRINGi273057.SSO0939.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3ICXX-ray3.10A/B/C135-380[»]
3ID5X-ray4.01A/E1-380[»]
3ID6X-ray2.60A1-262[»]
3PLAX-ray3.15A/B/K1-380[»]
ProteinModelPortaliQ97ZH3.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ97ZH3.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1498.
HOGENOMiHOG000227188.
InParanoidiQ97ZH3.
KOiK14564.
OMAiIFRSPRW.

Family and domain databases

InterProiIPR002687. Nop_dom.
IPR012976. NOSIC.
[Graphical view]
PfamiPF01798. Nop. 1 hit.
PF08060. NOSIC. 1 hit.
[Graphical view]
SMARTiSM00931. NOSIC. 1 hit.
[Graphical view]
PROSITEiPS51358. NOP. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q97ZH3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MMKIYLIEHV IGAVAYDENG NIVDYITNPR DLGKITEELL NNEKGIPFSA
60 70 80 90 100
TVELLKKVNP QEVVVENEAE VPKLQALGYR VSYEPYSKVS RIFRESLPKV
110 120 130 140 150
AIDIKFASNE EDYYNFLHEL SLEYTRRKLR SAAQKRDLLA IQAVRAMDDI
160 170 180 190 200
DKTINLFSER LREWYSIHFP ELDKLIEDHE EYATIVSRFG DRGFLTIDSL
210 220 230 240 250
KELGFNEQRI NRILDAAKKS IGADISEDDL SAMRMIANTI LDLYNIRRNL
260 270 280 290 300
NNYLEGVMKE VAPNVTALVG PALGARLLSI AGSLDELAKM PASTIQVLGA
310 320 330 340 350
EKALFRALRS GGRPPKHGII FQYPAIHTSP RWQRGKIARA LAAKLAIAAR
360 370 380 390 400
VDAFSGRFIG DQLNEQLKKR IDEIKEKFAQ PPPKKPQQQK PQQPQKQQAK
410
GKKGGKRRGK RK
Length:412
Mass (Da):46,693
Last modified:October 1, 2001 - v1
Checksum:i1DDA9C2C5E535ED4
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE006641 Genomic DNA. Translation: AAK41215.1.
PIRiH90244.
RefSeqiNP_342425.1. NC_002754.1.

Genome annotation databases

EnsemblBacteriaiAAK41215; AAK41215; SSO0939.
GeneIDi1455182.
KEGGisso:SSO0939.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE006641 Genomic DNA. Translation: AAK41215.1.
PIRiH90244.
RefSeqiNP_342425.1. NC_002754.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3ICXX-ray3.10A/B/C135-380[»]
3ID5X-ray4.01A/E1-380[»]
3ID6X-ray2.60A1-262[»]
3PLAX-ray3.15A/B/K1-380[»]
ProteinModelPortaliQ97ZH3.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

DIPiDIP-48938N.
IntActiQ97ZH3. 1 interaction.
STRINGi273057.SSO0939.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAK41215; AAK41215; SSO0939.
GeneIDi1455182.
KEGGisso:SSO0939.

Phylogenomic databases

eggNOGiCOG1498.
HOGENOMiHOG000227188.
InParanoidiQ97ZH3.
KOiK14564.
OMAiIFRSPRW.

Enzyme and pathway databases

BioCyciSSOL273057:GCH2-892-MONOMER.

Miscellaneous databases

EvolutionaryTraceiQ97ZH3.

Family and domain databases

InterProiIPR002687. Nop_dom.
IPR012976. NOSIC.
[Graphical view]
PfamiPF01798. Nop. 1 hit.
PF08060. NOSIC. 1 hit.
[Graphical view]
SMARTiSM00931. NOSIC. 1 hit.
[Graphical view]
PROSITEiPS51358. NOP. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 35092 / DSM 1617 / JCM 11322 / P2Imported.
  2. "Structural organization of box C/D RNA-guided RNA methyltransferase."
    Ye K., Jia R., Lin J., Ju M., Peng J., Xu A., Zhang L.
    Proc. Natl. Acad. Sci. U.S.A. 106:13808-13813(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (2.60 ANGSTROMS) OF 1-262.

Entry informationi

Entry nameiQ97ZH3_SULSO
AccessioniPrimary (citable) accession number: Q97ZH3
Entry historyi
Integrated into UniProtKB/TrEMBL: October 1, 2001
Last sequence update: October 1, 2001
Last modified: February 4, 2015
This is version 66 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.